Wall clock time and date at job start Fri Apr 10 2020 18:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46899 * 110.99843 * 2 1 4 4 C 1.46897 * 111.00202 * 123.95089 * 2 1 3 5 5 H 1.09005 * 109.47447 * 316.20265 * 4 2 1 6 6 C 1.50694 * 109.47488 * 196.20016 * 4 2 1 7 7 O 1.21281 * 120.00054 * 322.94406 * 6 4 2 8 8 N 1.34778 * 120.00196 * 142.93949 * 6 4 2 9 9 C 1.47562 * 125.67118 * 0.02562 * 8 6 4 10 10 C 1.55188 * 105.00394 * 203.85598 * 9 8 6 11 11 C 1.53720 * 101.43973 * 324.52175 * 10 9 8 12 12 C 1.53659 * 111.40526 * 272.72542 * 11 10 9 13 13 C 1.55175 * 101.41651 * 272.69541 * 12 11 10 14 14 N 1.47569 * 105.01055 * 324.50578 * 13 12 11 15 15 C 1.36929 * 125.67643 * 203.86129 * 14 13 12 16 16 H 1.08007 * 119.99931 * 179.97438 * 15 14 13 17 17 C 1.38813 * 120.00419 * 359.97438 * 15 14 13 18 18 N 1.31623 * 119.99638 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00499 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47059 * 59.99723 * 19 17 15 21 21 H 1.48496 * 109.47042 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47124 * 300.00098 * 19 17 15 23 23 C 1.47410 * 108.64684 * 23.85939 * 14 13 12 24 24 C 1.47406 * 125.67665 * 180.02562 * 8 6 4 25 25 C 1.53000 * 109.46935 * 76.20012 * 4 2 1 26 26 C 1.52998 * 117.49823 * 3.03395 * 25 4 2 27 27 C 1.53003 * 117.50059 * 294.37624 * 25 4 2 28 28 H 1.08992 * 109.46981 * 286.82489 * 1 2 3 29 29 H 1.09003 * 109.46716 * 46.82700 * 1 2 3 30 30 H 1.09003 * 109.46768 * 166.82465 * 1 2 3 31 31 H 1.09005 * 109.47370 * 191.41713 * 3 2 1 32 32 H 1.08999 * 109.47612 * 311.41916 * 3 2 1 33 33 H 1.09003 * 109.47285 * 71.41985 * 3 2 1 34 34 H 1.09000 * 110.33560 * 322.73340 * 9 8 6 35 35 H 1.09002 * 110.33684 * 84.87171 * 9 8 6 36 36 H 1.09007 * 111.03509 * 82.53708 * 10 9 8 37 37 H 1.09001 * 111.03405 * 206.42627 * 10 9 8 38 38 H 1.08999 * 111.03530 * 30.73080 * 12 11 10 39 39 H 1.09006 * 111.03143 * 154.66127 * 12 11 10 40 40 H 1.09002 * 110.33774 * 205.62206 * 13 12 11 41 41 H 1.09000 * 110.42118 * 83.42720 * 13 12 11 42 42 H 0.97001 * 119.99979 * 180.02562 * 18 17 15 43 43 H 1.08998 * 109.98179 * 238.54882 * 23 14 13 44 44 H 1.09000 * 109.98758 * 117.24200 * 23 14 13 45 45 H 1.09004 * 109.98240 * 297.23824 * 24 8 6 46 46 H 1.08996 * 109.98918 * 58.50798 * 24 8 6 47 47 H 1.08998 * 115.55179 * 148.70662 * 25 4 2 48 48 H 1.09001 * 117.49962 * 0.02562 * 26 25 4 49 49 H 1.09006 * 117.49692 * 145.02257 * 26 25 4 50 50 H 1.08998 * 117.49715 * 214.98310 * 27 25 4 51 51 H 1.09003 * 117.49477 * 359.97347 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 1 1.4332 -0.5138 2.0368 6 6 3.4492 -0.4260 1.3424 7 8 4.1664 -0.2276 0.3847 8 7 3.9525 -0.3423 2.5899 9 6 3.1970 -0.5587 3.8389 10 6 3.9847 0.2210 4.9251 11 6 5.4346 0.0122 4.4591 12 6 6.0248 -1.2876 5.0276 13 6 6.5816 -0.8011 6.3919 14 7 7.0740 0.5667 6.1379 15 6 8.0321 1.2188 6.8672 16 1 8.3245 2.2232 6.5987 17 6 8.6275 0.5890 7.9515 18 7 8.2708 -0.6349 8.2789 19 14 9.9340 1.4788 8.9467 20 1 9.3567 2.7189 9.5247 21 1 10.4078 0.5962 10.0429 22 1 11.0757 1.8291 8.0639 23 6 6.3628 1.1141 4.9685 24 6 5.3491 -0.0194 2.9336 25 6 1.8570 -2.2627 0.8524 26 6 1.2997 -2.6733 -0.5120 27 6 0.4415 -2.8335 0.7454 28 1 -0.3633 0.2974 0.9836 29 1 -0.3633 0.7032 -0.7495 30 1 -0.3633 -1.0007 -0.2342 31 1 3.0661 1.3497 -0.2034 32 1 1.4909 1.9543 -0.7706 33 1 1.8199 1.8280 0.9741 34 1 2.1868 -0.1602 3.7444 35 1 3.1634 -1.6207 4.0821 36 1 3.7201 1.2784 4.9171 37 1 3.8239 -0.2128 5.9121 38 1 5.2496 -2.0409 5.1676 39 1 6.8248 -1.6654 4.3908 40 1 7.3995 -1.4436 6.7181 41 1 5.7907 -0.7857 7.1418 42 1 8.6866 -1.0749 9.0369 43 1 7.0775 1.3876 4.1924 44 1 5.7792 1.9866 5.2622 45 1 6.0165 -0.7856 2.5390 46 1 5.6177 0.9547 2.5251 47 1 2.6239 -2.8985 1.2949 48 1 1.0320 -1.8771 -1.2066 49 1 1.6997 -3.5795 -0.9670 50 1 0.2773 -3.8449 1.1171 51 1 -0.3911 -2.1427 0.8785 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041359977.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:59 Heat of formation + Delta-G solvation = 34.132418 kcal Electronic energy + Delta-G solvation = -28708.640815 eV Core-core repulsion = 25030.870982 eV Total energy + Delta-G solvation = -3677.769833 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.86130 -40.52917 -38.77711 -37.22887 -36.11322 -34.52622 -32.20858 -30.67938 -30.54063 -29.62732 -28.38754 -27.25403 -25.31956 -24.10275 -23.77326 -22.99539 -22.13744 -21.87096 -20.34814 -19.90632 -18.85242 -18.24903 -17.50659 -17.06665 -16.90195 -16.61590 -16.00393 -15.77688 -15.61527 -15.20253 -14.98103 -14.76214 -14.44526 -14.30363 -14.05569 -14.01299 -13.71765 -13.63646 -13.32648 -13.22528 -13.03210 -12.94361 -12.74137 -12.64638 -12.54160 -12.41863 -12.20346 -12.05295 -11.81335 -11.73179 -11.59914 -11.45063 -11.44172 -11.22175 -11.02035 -10.73149 -10.58347 -9.71674 -9.34511 -8.87707 -7.77137 -5.20715 1.46583 1.47802 1.49247 1.55611 1.78611 2.49701 2.77437 3.06447 3.26458 3.35883 3.51339 3.61974 3.63540 3.78233 3.83382 3.95037 4.11172 4.20557 4.21401 4.23255 4.35803 4.38504 4.40466 4.51731 4.59705 4.61600 4.64061 4.67712 4.71756 4.74682 4.83277 4.84517 4.89545 4.98082 5.00406 5.02217 5.06832 5.10755 5.20180 5.27596 5.29476 5.31472 5.43997 5.47092 5.65849 5.83499 5.85835 6.01469 6.31737 6.46826 7.08881 7.11709 7.78333 8.42407 9.24450 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.030381 B = 0.002697 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.422450 B =10379.830426 C =10729.725900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 N -0.535 5.535 3 C 0.013 3.987 4 C 0.111 3.889 5 H 0.083 0.917 6 C 0.529 3.471 7 O -0.567 6.567 8 N -0.613 5.613 9 C 0.104 3.896 10 C -0.109 4.109 11 C -0.070 4.070 12 C -0.114 4.114 13 C 0.159 3.841 14 N -0.625 5.625 15 C -0.240 4.240 16 H 0.077 0.923 17 C -0.065 4.065 18 N -0.947 5.947 19 Si 0.978 3.022 20 H -0.278 1.278 21 H -0.292 1.292 22 H -0.280 1.280 23 C 0.148 3.852 24 C 0.134 3.866 25 C -0.164 4.164 26 C -0.165 4.165 27 C -0.160 4.160 28 H 0.038 0.962 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.024 0.976 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.055 0.945 40 H 0.067 0.933 41 H -0.003 1.003 42 H 0.247 0.753 43 H 0.020 0.980 44 H 0.029 0.971 45 H 0.059 0.941 46 H 0.060 0.940 47 H 0.098 0.902 48 H 0.110 0.890 49 H 0.090 0.910 50 H 0.107 0.893 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.056 -2.613 -14.023 25.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 N -0.260 5.260 3 C -0.135 4.135 4 C 0.000 4.000 5 H 0.101 0.899 6 C 0.318 3.682 7 O -0.445 6.445 8 N -0.347 5.347 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.071 4.071 12 C -0.153 4.153 13 C 0.034 3.966 14 N -0.351 5.351 15 C -0.369 4.369 16 H 0.095 0.905 17 C -0.257 4.257 18 N -0.597 5.597 19 Si 0.806 3.194 20 H -0.204 1.204 21 H -0.218 1.218 22 H -0.206 1.206 23 C 0.023 3.977 24 C 0.010 3.990 25 C -0.183 4.183 26 C -0.202 4.202 27 C -0.197 4.197 28 H 0.056 0.944 29 H 0.099 0.901 30 H 0.113 0.887 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.043 0.957 34 H 0.118 0.882 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.015 0.985 42 H 0.057 0.943 43 H 0.038 0.962 44 H 0.047 0.953 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.116 0.884 48 H 0.128 0.872 49 H 0.108 0.892 50 H 0.125 0.875 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -20.425 -2.753 -14.868 25.413 hybrid contribution 1.207 0.941 1.552 2.180 sum -19.219 -1.812 -13.316 23.451 Atomic orbital electron populations 1.22982 0.84987 1.04608 1.01520 1.61856 1.09264 1.13692 1.41185 1.22612 1.01833 0.88492 1.00542 1.21149 0.90115 0.94693 0.94092 0.89943 1.20581 0.90535 0.76216 0.80842 1.90660 1.61925 1.51146 1.40789 1.48785 1.11090 1.68732 1.06107 1.22629 0.95988 1.01404 0.81688 1.22616 0.91780 1.01319 0.98959 1.21358 0.96395 0.96379 0.92947 1.22731 0.99632 0.95702 0.97195 1.21738 0.96515 0.86104 0.92210 1.44881 1.43920 1.14242 1.32102 1.19391 1.12334 0.97819 1.07382 0.90466 1.25582 1.02500 0.97636 1.00005 1.70042 1.46284 1.13538 1.29803 0.85158 0.78956 0.77339 0.77909 1.20439 1.21845 1.20577 1.21191 0.92902 0.94674 0.88944 1.21580 0.83142 1.00368 0.93874 1.21973 0.99406 0.92380 1.04542 1.23072 1.03076 1.02897 0.91129 1.23352 0.92351 1.02877 1.01080 0.94375 0.90128 0.88708 0.92113 0.89688 0.95722 0.88157 0.89390 0.90217 0.89229 0.89239 0.92594 0.91461 0.98540 0.94314 0.96189 0.95268 0.92222 0.92208 0.88378 0.87197 0.89191 0.87499 0.86750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 8.16 127.69 1.04 1.11 16 2 N -0.53 -10.32 3.60 -927.74 -3.34 -13.67 16 3 C 0.01 0.27 8.73 127.69 1.11 1.39 16 4 C 0.11 2.20 2.13 44.17 0.09 2.29 16 5 H 0.08 1.32 5.97 -2.38 -0.01 1.31 16 6 C 0.53 14.47 5.73 87.65 0.50 14.97 16 7 O -0.57 -20.20 15.02 -3.03 -0.05 -20.25 16 8 N -0.61 -15.75 3.34 -812.84 -2.72 -18.47 16 9 C 0.10 2.04 6.51 86.93 0.57 2.61 16 10 C -0.11 -2.73 5.89 31.59 0.19 -2.54 16 11 C -0.07 -2.23 0.62 -51.84 -0.03 -2.26 16 12 C -0.11 -4.06 5.89 31.56 0.19 -3.87 16 13 C 0.16 7.58 5.77 86.92 0.50 8.08 16 14 N -0.63 -31.87 3.41 -693.04 -2.36 -34.23 16 15 C -0.24 -13.49 10.28 84.04 0.86 -12.62 16 16 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 17 C -0.06 -3.65 5.49 84.86 0.47 -3.18 16 18 N -0.95 -55.88 10.10 21.65 0.22 -55.67 16 19 Si 0.98 45.63 29.55 68.60 2.03 47.66 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 21 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 23 C 0.15 6.04 6.42 86.14 0.55 6.59 16 24 C 0.13 4.06 6.04 86.14 0.52 4.58 16 25 C -0.16 -2.95 5.72 -10.79 -0.06 -3.01 16 26 C -0.16 -2.68 9.38 30.62 0.29 -2.39 16 27 C -0.16 -1.89 9.51 30.62 0.29 -1.60 16 28 H 0.04 0.40 7.88 -2.39 -0.02 0.38 16 29 H 0.08 0.84 7.85 -2.39 -0.02 0.82 16 30 H 0.09 0.96 4.02 -2.39 -0.01 0.95 16 31 H 0.06 1.70 5.68 -2.38 -0.01 1.69 16 32 H 0.08 1.44 7.86 -2.39 -0.02 1.42 16 33 H 0.02 0.49 8.11 -2.39 -0.02 0.47 16 34 H 0.10 1.42 6.72 -2.39 -0.02 1.41 16 35 H 0.09 1.51 8.10 -2.39 -0.02 1.49 16 36 H 0.08 1.94 7.80 -2.38 -0.02 1.92 16 37 H 0.09 2.31 7.89 -2.39 -0.02 2.29 16 38 H 0.09 2.65 7.88 -2.39 -0.02 2.63 16 39 H 0.06 2.06 7.79 -2.38 -0.02 2.04 16 40 H 0.07 3.73 5.89 -2.39 -0.01 3.72 16 41 H 0.00 -0.17 8.10 -2.39 -0.02 -0.19 16 42 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 43 H 0.02 0.84 7.78 -2.39 -0.02 0.82 16 44 H 0.03 1.17 7.61 -2.39 -0.02 1.15 16 45 H 0.06 1.94 7.61 -2.39 -0.02 1.92 16 46 H 0.06 1.92 7.78 -2.39 -0.02 1.90 16 47 H 0.10 1.96 8.06 -2.39 -0.02 1.94 16 48 H 0.11 1.92 5.86 -2.39 -0.01 1.91 16 49 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 50 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 51 H 0.11 1.02 5.66 -2.39 -0.01 1.01 16 Total: -1.00 -69.99 378.92 1.77 -68.22 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.91 Total: 16.26 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 7.08 Total: 10.14 kcal Atomic # 7 Polarization: -113.83 SS G_CDS: -8.20 Total: -122.04 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.05 Total: -20.25 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -69.99 1.77 -68.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041359977.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.355 kcal (2) G-P(sol) polarization free energy of solvation -69.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds