Wall clock time and date at job start Fri Apr 10 2020 18:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46905 * 110.99469 * 2 1 4 4 C 1.46899 * 111.00113 * 123.95164 * 2 1 3 5 5 H 1.08995 * 109.47282 * 308.91783 * 4 2 1 6 6 C 1.50695 * 109.47083 * 188.91141 * 4 2 1 7 7 O 1.21286 * 120.00287 * 340.01038 * 6 4 2 8 8 N 1.34777 * 119.99812 * 160.00240 * 6 4 2 9 9 C 1.48269 * 127.71942 * 0.02562 * 8 6 4 10 10 C 1.54759 * 104.66442 * 141.26046 * 9 8 6 11 11 C 1.52875 * 104.40755 * 23.67745 * 10 9 8 12 12 C 1.53709 * 111.75326 * 121.74250 * 11 10 9 13 13 C 1.54585 * 102.94860 * 154.43625 * 12 11 10 14 14 N 1.47136 * 107.32984 * 339.02614 * 13 12 11 15 15 C 1.36937 * 125.60123 * 179.10048 * 14 13 12 16 16 H 1.08001 * 119.99327 * 179.97438 * 15 14 13 17 17 C 1.38809 * 120.00386 * 359.97438 * 15 14 13 18 18 N 1.31618 * 120.00062 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99794 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47228 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.46981 * 120.00107 * 19 17 15 22 22 H 1.48505 * 109.46569 * 239.99658 * 19 17 15 23 23 C 1.47707 * 108.78593 * 359.06753 * 14 13 12 24 24 C 1.48493 * 127.71885 * 180.02562 * 8 6 4 25 25 C 1.53004 * 109.46651 * 68.91829 * 4 2 1 26 26 C 1.52999 * 117.50248 * 3.41405 * 25 4 2 27 27 C 1.52992 * 60.00219 * 252.51246 * 26 25 4 28 28 H 1.09003 * 109.47365 * 283.70085 * 1 2 3 29 29 H 1.08997 * 109.47479 * 43.70212 * 1 2 3 30 30 H 1.09001 * 109.46925 * 163.70391 * 1 2 3 31 31 H 1.09006 * 109.46587 * 180.02562 * 3 2 1 32 32 H 1.08994 * 109.47514 * 300.00091 * 3 2 1 33 33 H 1.09000 * 109.47156 * 60.00361 * 3 2 1 34 34 H 1.08996 * 110.40105 * 22.46727 * 9 8 6 35 35 H 1.09002 * 110.39997 * 260.05434 * 9 8 6 36 36 H 1.09002 * 110.44407 * 264.94453 * 10 9 8 37 37 H 1.09006 * 110.55226 * 142.46141 * 10 9 8 38 38 H 1.08999 * 110.75224 * 36.01537 * 12 11 10 39 39 H 1.09001 * 110.74282 * 272.85196 * 12 11 10 40 40 H 1.09000 * 109.87207 * 98.46630 * 13 12 11 41 41 H 1.09006 * 109.86826 * 219.44598 * 13 12 11 42 42 H 0.96995 * 120.00052 * 180.02562 * 18 17 15 43 43 H 1.09003 * 110.38766 * 141.40243 * 23 14 13 44 44 H 1.09001 * 110.39073 * 263.78689 * 23 14 13 45 45 H 1.08998 * 110.47205 * 99.55312 * 24 8 6 46 46 H 1.08999 * 110.46948 * 336.95186 * 24 8 6 47 47 H 1.08999 * 115.54847 * 149.12867 * 25 4 2 48 48 H 1.09004 * 117.49522 * 0.02562 * 26 25 4 49 49 H 1.08997 * 117.49639 * 145.01767 * 26 25 4 50 50 H 1.08994 * 117.50185 * 252.50620 * 27 26 25 51 51 H 1.09005 * 117.49389 * 107.48865 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 1 1.5230 -0.4214 2.0574 6 6 3.4859 -0.5643 1.2322 7 8 4.1076 -0.1737 0.2668 8 7 4.1280 -0.8179 2.3898 9 6 3.5435 -1.2976 3.6651 10 6 4.5859 -2.2963 4.2227 11 6 5.9033 -1.8739 3.5722 12 6 6.9697 -1.5217 4.6218 13 6 8.2950 -1.7807 3.8694 14 7 7.9942 -2.6891 2.7517 15 6 8.8989 -3.1484 1.8321 16 1 8.5780 -3.8154 1.0456 17 6 10.2283 -2.7567 1.9107 18 7 10.6192 -1.9434 2.8689 19 14 11.4625 -3.3840 0.6565 20 1 10.7754 -4.2782 -0.3096 21 1 12.0580 -2.2338 -0.0699 22 1 12.5352 -4.1389 1.3527 23 6 6.5561 -3.0247 2.7853 24 6 5.5791 -0.6793 2.6729 25 6 1.6938 -2.2522 0.9350 26 6 1.0155 -2.6635 -0.3733 27 6 0.2253 -2.6816 0.9366 28 1 -0.3634 0.2434 0.9984 29 1 -0.3634 0.7429 -0.7100 30 1 -0.3633 -0.9864 -0.2884 31 1 3.0850 1.3424 -0.0005 32 1 1.6458 1.8949 -0.8899 33 1 1.6459 1.8948 0.8900 34 1 2.5945 -1.8016 3.4823 35 1 3.4062 -0.4663 4.3566 36 1 4.3287 -3.3156 3.9347 37 1 4.6531 -2.2135 5.3075 38 1 6.8856 -2.1734 5.4915 39 1 6.8908 -0.4752 4.9162 40 1 8.6933 -0.8411 3.4864 41 1 9.0182 -2.2431 4.5413 42 1 11.5480 -1.6694 2.9236 43 1 6.1528 -3.0689 1.7736 44 1 6.3993 -3.9729 3.2994 45 1 5.7779 0.2565 3.1953 46 1 6.1544 -0.7306 1.7486 47 1 2.4203 -2.9421 1.3642 48 1 0.7846 -1.8752 -1.0899 49 1 1.2960 -3.6241 -0.8052 50 1 -0.0143 -3.6541 1.3665 51 1 -0.5259 -1.9052 1.0819 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041359980.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:02 Heat of formation + Delta-G solvation = 63.116754 kcal Electronic energy + Delta-G solvation = -29131.208371 eV Core-core repulsion = 25454.695393 eV Total energy + Delta-G solvation = -3676.512978 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.69206 -39.30005 -37.68773 -35.77862 -35.08651 -32.68462 -30.69038 -29.50068 -29.08953 -27.89080 -27.48051 -25.60172 -24.24713 -22.95026 -22.33839 -22.30043 -21.07837 -20.20752 -19.11918 -18.71724 -17.18094 -16.71275 -16.60052 -15.95348 -15.39058 -15.05373 -14.65956 -14.49225 -14.22694 -14.06760 -13.87975 -13.64557 -13.54677 -13.07928 -12.95108 -12.59769 -12.36698 -12.24337 -11.96784 -11.87307 -11.53112 -11.47489 -11.44887 -11.36233 -11.22412 -10.90716 -10.84162 -10.76888 -10.61261 -10.27050 -10.13064 -9.96205 -9.91412 -9.78821 -9.59571 -9.40601 -8.60120 -8.55239 -8.44367 -6.78567 -5.66857 -2.99762 2.66029 2.89414 3.43990 3.49972 3.52166 3.58411 3.86145 4.38051 4.52176 4.54237 4.72655 4.77386 4.82030 4.92651 4.97348 4.99745 5.12134 5.17121 5.27793 5.29793 5.41176 5.43415 5.48717 5.51572 5.54172 5.56999 5.58450 5.79365 5.81750 5.85099 5.92587 5.94098 6.03056 6.04692 6.14132 6.15977 6.22704 6.36622 6.41419 6.53781 6.59536 6.73717 6.79655 6.83993 6.85529 7.60591 7.64174 7.69341 7.86733 8.29778 8.30117 9.26967 9.86849 10.52419 11.44959 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.016970 B = 0.003420 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.526598 B = 8185.723253 C = 8639.661159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 N -0.520 5.520 3 C 0.002 3.998 4 C 0.105 3.895 5 H 0.063 0.937 6 C 0.538 3.462 7 O -0.517 6.517 8 N -0.621 5.621 9 C 0.099 3.901 10 C -0.119 4.119 11 C -0.086 4.086 12 C -0.131 4.131 13 C 0.177 3.823 14 N -0.605 5.605 15 C -0.225 4.225 16 H 0.077 0.923 17 C -0.008 4.008 18 N -0.922 5.922 19 Si 0.910 3.090 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.152 3.848 24 C 0.129 3.871 25 C -0.147 4.147 26 C -0.161 4.161 27 C -0.190 4.190 28 H 0.026 0.974 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.068 0.932 33 H 0.016 0.984 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.046 0.954 41 H 0.042 0.958 42 H 0.251 0.749 43 H 0.037 0.963 44 H 0.019 0.981 45 H 0.068 0.932 46 H 0.092 0.908 47 H 0.112 0.888 48 H 0.118 0.882 49 H 0.091 0.909 50 H 0.094 0.906 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.276 2.793 2.437 23.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 N -0.245 5.245 3 C -0.146 4.146 4 C -0.007 4.007 5 H 0.080 0.920 6 C 0.325 3.675 7 O -0.393 6.393 8 N -0.356 5.356 9 C -0.025 4.025 10 C -0.157 4.157 11 C -0.088 4.088 12 C -0.170 4.170 13 C 0.053 3.947 14 N -0.331 5.331 15 C -0.353 4.353 16 H 0.095 0.905 17 C -0.204 4.204 18 N -0.570 5.570 19 Si 0.741 3.259 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.026 3.974 24 C 0.007 3.993 25 C -0.166 4.166 26 C -0.198 4.198 27 C -0.226 4.226 28 H 0.045 0.955 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.122 0.878 32 H 0.086 0.914 33 H 0.035 0.965 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.056 0.944 44 H 0.037 0.963 45 H 0.086 0.914 46 H 0.110 0.890 47 H 0.130 0.870 48 H 0.136 0.864 49 H 0.110 0.890 50 H 0.113 0.887 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -22.598 2.838 1.315 22.813 hybrid contribution 0.467 0.087 0.321 0.573 sum -22.131 2.925 1.636 22.383 Atomic orbital electron populations 1.23044 0.87368 1.03919 1.00295 1.61782 1.07171 1.14409 1.41112 1.22879 1.04534 0.87322 0.99839 1.21044 0.92258 0.94170 0.93213 0.91953 1.19829 0.88767 0.77576 0.81294 1.90657 1.67918 1.45192 1.35484 1.49187 1.09972 1.65979 1.10451 1.22521 0.97335 0.97403 0.85195 1.22389 0.93952 0.99023 1.00364 1.21710 0.94171 0.96537 0.96350 1.22826 0.97131 1.00124 0.96924 1.21212 0.90454 0.94611 0.88454 1.44566 1.02508 1.54631 1.31412 1.19101 0.88280 1.22934 1.04999 0.90506 1.24772 0.97070 0.99851 0.98740 1.69967 1.15738 1.37902 1.33441 0.86061 0.81380 0.77953 0.80511 1.20518 1.21754 1.21829 1.21471 0.85968 0.93291 0.96692 1.22187 0.79498 0.97035 1.00571 1.22063 0.96162 0.93852 1.04537 1.23179 1.02262 1.03179 0.91206 1.23321 0.93699 1.02933 1.02677 0.95536 0.91321 0.89149 0.87813 0.91358 0.96499 0.90566 0.91254 0.90789 0.90184 0.92035 0.92037 0.93620 0.93952 0.93897 0.94445 0.96296 0.91409 0.88958 0.86978 0.86401 0.89049 0.88737 0.88203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 7.65 60.07 0.46 0.47 16 2 N -0.52 -6.18 3.77 -244.58 -0.92 -7.10 16 3 C 0.00 0.02 8.99 60.07 0.54 0.56 16 4 C 0.10 1.25 1.64 -68.87 -0.11 1.14 16 5 H 0.06 0.66 7.39 -51.93 -0.38 0.27 16 6 C 0.54 8.38 6.29 -10.99 -0.07 8.31 16 7 O -0.52 -10.17 14.27 5.55 0.08 -10.09 16 8 N -0.62 -9.01 3.33 -169.54 -0.56 -9.58 16 9 C 0.10 1.06 6.75 -2.14 -0.01 1.05 16 10 C -0.12 -1.43 6.33 -25.87 -0.16 -1.59 16 11 C -0.09 -1.41 0.82 -153.71 -0.13 -1.54 16 12 C -0.13 -2.30 5.81 -25.53 -0.15 -2.45 16 13 C 0.18 4.24 5.33 -2.86 -0.02 4.23 16 14 N -0.60 -15.51 3.41 -170.19 -0.58 -16.09 16 15 C -0.22 -6.41 10.28 -15.06 -0.15 -6.56 16 16 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 17 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 18 N -0.92 -27.37 10.31 55.49 0.57 -26.80 16 19 Si 0.91 22.71 29.55 -169.99 -5.02 17.68 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 23 C 0.15 3.15 5.97 -2.89 -0.02 3.13 16 24 C 0.13 2.19 6.11 -2.94 -0.02 2.17 16 25 C -0.15 -1.59 5.19 -90.62 -0.47 -2.06 16 26 C -0.16 -1.62 9.25 -26.74 -0.25 -1.86 16 27 C -0.19 -1.53 9.43 -26.74 -0.25 -1.78 16 28 H 0.03 0.21 7.76 -51.93 -0.40 -0.20 16 29 H 0.07 0.53 7.95 -51.93 -0.41 0.11 16 30 H 0.09 0.70 3.74 -51.93 -0.19 0.50 16 31 H 0.10 1.59 4.96 -51.93 -0.26 1.34 16 32 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 33 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.08 0.68 6.82 -51.93 -0.35 0.32 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.87 7.68 -51.93 -0.40 0.47 16 37 H 0.08 0.83 7.63 -51.93 -0.40 0.44 16 38 H 0.06 0.99 7.89 -51.93 -0.41 0.58 16 39 H 0.06 0.97 7.67 -51.93 -0.40 0.57 16 40 H 0.05 1.22 7.39 -51.93 -0.38 0.84 16 41 H 0.04 1.13 7.50 -51.93 -0.39 0.74 16 42 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 43 H 0.04 0.82 8.00 -51.93 -0.42 0.40 16 44 H 0.02 0.39 7.93 -51.93 -0.41 -0.02 16 45 H 0.07 1.09 7.62 -51.93 -0.40 0.70 16 46 H 0.09 1.96 7.60 -51.93 -0.39 1.57 16 47 H 0.11 1.31 8.07 -51.93 -0.42 0.89 16 48 H 0.12 1.24 5.43 -51.93 -0.28 0.96 16 49 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 50 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 51 H 0.10 0.70 5.63 -51.93 -0.29 0.41 16 LS Contribution 378.71 15.07 5.71 5.71 Total: -1.00 -32.74 378.71 -10.28 -43.03 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -8.65 Total: 0.36 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -0.91 Total: 2.87 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: -1.49 Total: -59.57 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.08 Total: -10.09 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.74 -10.28 -43.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041359980.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.145 kcal (2) G-P(sol) polarization free energy of solvation -32.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds