Wall clock time and date at job start Fri Apr 10 2020 18:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46905 * 110.99469 * 2 1 4 4 C 1.46899 * 111.00113 * 123.95164 * 2 1 3 5 5 H 1.08995 * 109.47282 * 308.91783 * 4 2 1 6 6 C 1.50695 * 109.47083 * 188.91141 * 4 2 1 7 7 O 1.21286 * 120.00287 * 340.01038 * 6 4 2 8 8 N 1.34777 * 119.99812 * 160.00240 * 6 4 2 9 9 C 1.48269 * 127.71942 * 0.02562 * 8 6 4 10 10 C 1.54759 * 104.66442 * 141.26046 * 9 8 6 11 11 C 1.52875 * 104.40755 * 23.67745 * 10 9 8 12 12 C 1.53709 * 111.75326 * 121.74250 * 11 10 9 13 13 C 1.54585 * 102.94860 * 154.43625 * 12 11 10 14 14 N 1.47136 * 107.32984 * 339.02614 * 13 12 11 15 15 C 1.36937 * 125.60123 * 179.10048 * 14 13 12 16 16 H 1.08001 * 119.99327 * 179.97438 * 15 14 13 17 17 C 1.38809 * 120.00386 * 359.97438 * 15 14 13 18 18 N 1.31618 * 120.00062 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99794 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47228 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.46981 * 120.00107 * 19 17 15 22 22 H 1.48505 * 109.46569 * 239.99658 * 19 17 15 23 23 C 1.47707 * 108.78593 * 359.06753 * 14 13 12 24 24 C 1.48493 * 127.71885 * 180.02562 * 8 6 4 25 25 C 1.53004 * 109.46651 * 68.91829 * 4 2 1 26 26 C 1.52999 * 117.50248 * 3.41405 * 25 4 2 27 27 C 1.52992 * 60.00219 * 252.51246 * 26 25 4 28 28 H 1.09003 * 109.47365 * 283.70085 * 1 2 3 29 29 H 1.08997 * 109.47479 * 43.70212 * 1 2 3 30 30 H 1.09001 * 109.46925 * 163.70391 * 1 2 3 31 31 H 1.09006 * 109.46587 * 180.02562 * 3 2 1 32 32 H 1.08994 * 109.47514 * 300.00091 * 3 2 1 33 33 H 1.09000 * 109.47156 * 60.00361 * 3 2 1 34 34 H 1.08996 * 110.40105 * 22.46727 * 9 8 6 35 35 H 1.09002 * 110.39997 * 260.05434 * 9 8 6 36 36 H 1.09002 * 110.44407 * 264.94453 * 10 9 8 37 37 H 1.09006 * 110.55226 * 142.46141 * 10 9 8 38 38 H 1.08999 * 110.75224 * 36.01537 * 12 11 10 39 39 H 1.09001 * 110.74282 * 272.85196 * 12 11 10 40 40 H 1.09000 * 109.87207 * 98.46630 * 13 12 11 41 41 H 1.09006 * 109.86826 * 219.44598 * 13 12 11 42 42 H 0.96995 * 120.00052 * 180.02562 * 18 17 15 43 43 H 1.09003 * 110.38766 * 141.40243 * 23 14 13 44 44 H 1.09001 * 110.39073 * 263.78689 * 23 14 13 45 45 H 1.08998 * 110.47205 * 99.55312 * 24 8 6 46 46 H 1.08999 * 110.46948 * 336.95186 * 24 8 6 47 47 H 1.08999 * 115.54847 * 149.12867 * 25 4 2 48 48 H 1.09004 * 117.49522 * 0.02562 * 26 25 4 49 49 H 1.08997 * 117.49639 * 145.01767 * 26 25 4 50 50 H 1.08994 * 117.50185 * 252.50620 * 27 26 25 51 51 H 1.09005 * 117.49389 * 107.48865 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 1 1.5230 -0.4214 2.0574 6 6 3.4859 -0.5643 1.2322 7 8 4.1076 -0.1737 0.2668 8 7 4.1280 -0.8179 2.3898 9 6 3.5435 -1.2976 3.6651 10 6 4.5859 -2.2963 4.2227 11 6 5.9033 -1.8739 3.5722 12 6 6.9697 -1.5217 4.6218 13 6 8.2950 -1.7807 3.8694 14 7 7.9942 -2.6891 2.7517 15 6 8.8989 -3.1484 1.8321 16 1 8.5780 -3.8154 1.0456 17 6 10.2283 -2.7567 1.9107 18 7 10.6192 -1.9434 2.8689 19 14 11.4625 -3.3840 0.6565 20 1 10.7754 -4.2782 -0.3096 21 1 12.0580 -2.2338 -0.0699 22 1 12.5352 -4.1389 1.3527 23 6 6.5561 -3.0247 2.7853 24 6 5.5791 -0.6793 2.6729 25 6 1.6938 -2.2522 0.9350 26 6 1.0155 -2.6635 -0.3733 27 6 0.2253 -2.6816 0.9366 28 1 -0.3634 0.2434 0.9984 29 1 -0.3634 0.7429 -0.7100 30 1 -0.3633 -0.9864 -0.2884 31 1 3.0850 1.3424 -0.0005 32 1 1.6458 1.8949 -0.8899 33 1 1.6459 1.8948 0.8900 34 1 2.5945 -1.8016 3.4823 35 1 3.4062 -0.4663 4.3566 36 1 4.3287 -3.3156 3.9347 37 1 4.6531 -2.2135 5.3075 38 1 6.8856 -2.1734 5.4915 39 1 6.8908 -0.4752 4.9162 40 1 8.6933 -0.8411 3.4864 41 1 9.0182 -2.2431 4.5413 42 1 11.5480 -1.6694 2.9236 43 1 6.1528 -3.0689 1.7736 44 1 6.3993 -3.9729 3.2994 45 1 5.7779 0.2565 3.1953 46 1 6.1544 -0.7306 1.7486 47 1 2.4203 -2.9421 1.3642 48 1 0.7846 -1.8752 -1.0899 49 1 1.2960 -3.6241 -0.8052 50 1 -0.0143 -3.6541 1.3665 51 1 -0.5259 -1.9052 1.0819 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041359980.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:01 Heat of formation + Delta-G solvation = 41.542037 kcal Electronic energy + Delta-G solvation = -29132.143921 eV Core-core repulsion = 25454.695393 eV Total energy + Delta-G solvation = -3677.448528 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.79499 -40.50610 -38.83881 -37.26034 -35.97525 -34.52226 -32.29033 -30.71464 -30.47816 -29.28691 -28.32702 -27.30202 -25.84387 -23.76054 -23.62479 -23.00587 -22.18547 -21.92029 -20.27305 -20.02779 -18.85408 -18.12875 -17.45809 -17.04567 -16.78129 -16.50012 -16.07644 -15.89218 -15.46947 -15.19928 -15.03296 -15.01411 -14.55529 -14.48782 -14.07546 -13.84861 -13.55153 -13.35129 -13.21179 -13.17576 -12.97289 -12.90901 -12.78805 -12.64991 -12.53225 -12.43795 -12.13344 -12.02081 -11.87434 -11.69690 -11.54104 -11.43013 -11.36452 -11.19843 -11.02218 -10.72690 -10.55073 -9.73339 -9.31406 -8.90196 -7.87854 -5.22343 1.40697 1.42460 1.51575 1.52384 1.81571 2.46197 2.77917 3.06155 3.28714 3.37739 3.60045 3.62880 3.71379 3.79933 3.86440 3.97280 4.12682 4.19953 4.25656 4.31741 4.39572 4.39663 4.40431 4.50273 4.62291 4.64457 4.67588 4.68316 4.74432 4.83200 4.85350 4.89507 4.91304 4.93135 5.04668 5.08314 5.10852 5.12834 5.17120 5.26414 5.38064 5.39827 5.40460 5.43910 5.69920 5.78509 5.89385 6.05680 6.18633 6.58357 7.09457 7.14197 7.76170 8.39680 9.22115 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.016970 B = 0.003420 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.526598 B = 8185.723253 C = 8639.661159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 N -0.541 5.541 3 C 0.007 3.993 4 C 0.117 3.883 5 H 0.087 0.913 6 C 0.528 3.472 7 O -0.572 6.572 8 N -0.621 5.621 9 C 0.100 3.900 10 C -0.109 4.109 11 C -0.073 4.073 12 C -0.113 4.113 13 C 0.183 3.817 14 N -0.627 5.627 15 C -0.243 4.243 16 H 0.072 0.928 17 C -0.064 4.064 18 N -0.947 5.947 19 Si 0.974 3.026 20 H -0.270 1.270 21 H -0.293 1.293 22 H -0.286 1.286 23 C 0.150 3.850 24 C 0.132 3.868 25 C -0.166 4.166 26 C -0.177 4.177 27 C -0.153 4.153 28 H 0.042 0.958 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.030 0.970 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.112 0.888 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.004 0.996 41 H 0.007 0.993 42 H 0.247 0.753 43 H 0.015 0.985 44 H 0.032 0.968 45 H 0.078 0.922 46 H 0.035 0.965 47 H 0.101 0.899 48 H 0.111 0.889 49 H 0.087 0.913 50 H 0.111 0.889 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.092 2.216 4.303 27.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 N -0.266 5.266 3 C -0.140 4.140 4 C 0.005 3.995 5 H 0.105 0.895 6 C 0.318 3.682 7 O -0.452 6.452 8 N -0.354 5.354 9 C -0.022 4.022 10 C -0.148 4.148 11 C -0.075 4.075 12 C -0.151 4.151 13 C 0.058 3.942 14 N -0.354 5.354 15 C -0.372 4.372 16 H 0.090 0.910 17 C -0.257 4.257 18 N -0.597 5.597 19 Si 0.802 3.198 20 H -0.195 1.195 21 H -0.220 1.220 22 H -0.213 1.213 23 C 0.025 3.975 24 C 0.009 3.991 25 C -0.185 4.185 26 C -0.214 4.214 27 C -0.189 4.189 28 H 0.061 0.939 29 H 0.094 0.906 30 H 0.118 0.882 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.048 0.952 34 H 0.123 0.877 35 H 0.115 0.885 36 H 0.099 0.901 37 H 0.131 0.869 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.023 0.977 41 H 0.026 0.974 42 H 0.056 0.944 43 H 0.034 0.966 44 H 0.050 0.950 45 H 0.096 0.904 46 H 0.054 0.946 47 H 0.119 0.881 48 H 0.129 0.871 49 H 0.106 0.894 50 H 0.129 0.871 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -26.474 2.235 3.215 26.762 hybrid contribution 1.673 0.258 -0.334 1.726 sum -24.801 2.493 2.881 25.092 Atomic orbital electron populations 1.23106 0.84992 1.04831 1.01514 1.61746 1.09291 1.13979 1.41618 1.22715 1.02243 0.88162 1.00924 1.20999 0.89083 0.95043 0.94329 0.89531 1.20701 0.90469 0.76427 0.80650 1.90641 1.69418 1.47591 1.37515 1.49283 1.08807 1.65535 1.11824 1.22822 0.97757 0.98199 0.83389 1.22409 0.90776 0.99669 1.01902 1.21582 0.96184 0.94358 0.95338 1.22705 0.93146 1.02323 0.96970 1.21003 0.93458 0.91930 0.87796 1.44873 1.04334 1.54786 1.31391 1.19415 0.89367 1.22831 1.05611 0.90982 1.25584 0.98816 1.00472 1.00789 1.70183 1.15640 1.38948 1.34888 0.85074 0.78970 0.77330 0.78377 1.19488 1.21981 1.21258 1.21636 0.83755 0.95640 0.96498 1.21941 0.81069 0.97977 0.98145 1.22032 0.98107 0.92831 1.05566 1.23203 1.03601 1.02847 0.91733 1.23394 0.91789 1.03985 0.99731 0.93907 0.90593 0.88234 0.91514 0.90487 0.95154 0.87709 0.88477 0.90101 0.86922 0.89370 0.89597 0.97749 0.97426 0.94401 0.96625 0.95049 0.90366 0.94650 0.88066 0.87081 0.89418 0.87117 0.86436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.03 7.65 127.69 0.98 1.01 16 2 N -0.54 -12.07 3.77 -927.72 -3.50 -15.57 16 3 C 0.01 0.17 8.99 127.69 1.15 1.32 16 4 C 0.12 2.55 1.64 44.17 0.07 2.63 16 5 H 0.09 1.46 7.39 -2.39 -0.02 1.44 16 6 C 0.53 16.49 6.29 87.66 0.55 17.04 16 7 O -0.57 -23.94 14.27 -3.05 -0.04 -23.98 16 8 N -0.62 -17.39 3.33 -808.68 -2.69 -20.08 16 9 C 0.10 1.71 6.75 86.64 0.59 2.30 16 10 C -0.11 -2.17 6.33 31.15 0.20 -1.98 16 11 C -0.07 -2.31 0.82 -51.67 -0.04 -2.36 16 12 C -0.11 -3.80 5.81 31.37 0.18 -3.62 16 13 C 0.18 9.12 5.33 86.80 0.46 9.58 16 14 N -0.63 -33.63 3.41 -692.35 -2.36 -35.99 16 15 C -0.24 -14.50 10.28 84.03 0.86 -13.63 16 16 H 0.07 4.23 7.83 -2.91 -0.02 4.20 16 17 C -0.06 -3.80 5.49 84.86 0.47 -3.33 16 18 N -0.95 -58.89 10.31 21.65 0.22 -58.66 16 19 Si 0.97 48.30 29.55 68.60 2.03 50.32 16 20 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 22 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 23 C 0.15 6.33 5.97 86.47 0.52 6.84 16 24 C 0.13 4.56 6.11 86.00 0.53 5.08 16 25 C -0.17 -3.21 5.19 -10.79 -0.06 -3.27 16 26 C -0.18 -3.23 9.25 30.59 0.28 -2.95 16 27 C -0.15 -1.85 9.43 30.59 0.29 -1.56 16 28 H 0.04 0.47 7.76 -2.39 -0.02 0.45 16 29 H 0.08 0.96 7.95 -2.39 -0.02 0.94 16 30 H 0.10 1.20 3.74 -2.39 -0.01 1.19 16 31 H 0.07 2.15 4.96 -2.38 -0.01 2.14 16 32 H 0.08 1.63 8.08 -2.39 -0.02 1.61 16 33 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.10 1.29 6.82 -2.39 -0.02 1.27 16 35 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.08 1.57 7.68 -2.39 -0.02 1.55 16 37 H 0.11 1.63 7.63 -2.38 -0.02 1.62 16 38 H 0.09 2.55 7.89 -2.39 -0.02 2.53 16 39 H 0.09 2.50 7.67 -2.39 -0.02 2.49 16 40 H 0.00 0.24 7.39 -2.39 -0.02 0.22 16 41 H 0.01 0.42 7.50 -2.38 -0.02 0.40 16 42 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 43 H 0.02 0.71 8.00 -2.39 -0.02 0.69 16 44 H 0.03 1.27 7.93 -2.39 -0.02 1.25 16 45 H 0.08 2.51 7.62 -2.39 -0.02 2.50 16 46 H 0.03 1.62 7.60 -2.39 -0.02 1.60 16 47 H 0.10 2.18 8.07 -2.39 -0.02 2.16 16 48 H 0.11 2.19 5.43 -2.38 -0.01 2.18 16 49 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 50 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 51 H 0.12 1.05 5.63 -2.38 -0.01 1.03 16 Total: -1.00 -79.52 378.71 1.59 -77.93 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 0.91 Total: 12.91 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: 7.02 Total: 13.11 kcal Atomic # 7 Polarization: -121.97 SS G_CDS: -8.33 Total: -130.30 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.04 Total: -23.98 kcal Atomic # 14 Polarization: 48.30 SS G_CDS: 2.03 Total: 50.32 kcal Total: -79.52 1.59 -77.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041359980.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.476 kcal (2) G-P(sol) polarization free energy of solvation -79.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds