Wall clock time and date at job start Fri Apr 10 2020 18:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46901 * 110.99765 * 2 1 4 4 C 1.46892 * 110.99805 * 123.94948 * 2 1 3 5 5 H 1.09003 * 109.47366 * 172.32543 * 4 2 1 6 6 C 1.50702 * 109.47525 * 292.32626 * 4 2 1 7 7 O 1.21276 * 119.99735 * 27.96117 * 6 4 2 8 8 N 1.34778 * 120.00361 * 207.96270 * 6 4 2 9 9 C 1.47579 * 125.67202 * 359.69105 * 8 6 4 10 10 C 1.55429 * 104.91734 * 156.11329 * 9 8 6 11 11 C 1.53497 * 101.29939 * 35.62106 * 10 9 8 12 12 C 1.53468 * 111.80968 * 88.09132 * 11 10 9 13 13 C 1.54632 * 102.74656 * 154.35616 * 12 11 10 14 14 N 1.47154 * 107.33912 * 339.34523 * 13 12 11 15 15 C 1.36946 * 125.59574 * 179.10530 * 14 13 12 16 16 H 1.07997 * 119.99834 * 179.97438 * 15 14 13 17 17 C 1.38810 * 119.99937 * 359.97438 * 15 14 13 18 18 N 1.31618 * 120.00169 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99814 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46915 * 90.00147 * 19 17 15 21 21 H 1.48497 * 109.47260 * 210.00038 * 19 17 15 22 22 H 1.48501 * 109.47429 * 330.00250 * 19 17 15 23 23 C 1.47748 * 108.80741 * 359.08676 * 14 13 12 24 24 C 1.47443 * 125.67930 * 179.97438 * 8 6 4 25 25 C 1.53004 * 109.47377 * 52.32755 * 4 2 1 26 26 C 1.53001 * 117.49974 * 125.34372 * 25 4 2 27 27 C 1.52995 * 117.49672 * 56.71967 * 25 4 2 28 28 H 1.09008 * 109.46976 * 304.01217 * 1 2 3 29 29 H 1.09004 * 109.47147 * 64.00919 * 1 2 3 30 30 H 1.08997 * 109.47549 * 184.01265 * 1 2 3 31 31 H 1.08999 * 109.46964 * 183.95728 * 3 2 1 32 32 H 1.09005 * 109.47128 * 303.95016 * 3 2 1 33 33 H 1.08994 * 109.47426 * 63.95086 * 3 2 1 34 34 H 1.08997 * 110.32981 * 275.09367 * 9 8 6 35 35 H 1.09007 * 110.33203 * 37.31977 * 9 8 6 36 36 H 1.08997 * 111.23160 * 277.56140 * 10 9 8 37 37 H 1.08998 * 110.97267 * 153.56649 * 10 9 8 38 38 H 1.08996 * 110.75955 * 272.66811 * 12 11 10 39 39 H 1.09004 * 110.75631 * 35.85711 * 12 11 10 40 40 H 1.09001 * 109.87403 * 98.78375 * 13 12 11 41 41 H 1.08997 * 109.87003 * 219.76942 * 13 12 11 42 42 H 0.96997 * 120.00117 * 179.97438 * 18 17 15 43 43 H 1.08996 * 110.39920 * 263.54156 * 23 14 13 44 44 H 1.09001 * 110.40046 * 141.13859 * 23 14 13 45 45 H 1.09007 * 109.99513 * 301.51540 * 24 8 6 46 46 H 1.08993 * 109.99582 * 62.79809 * 24 8 6 47 47 H 1.09001 * 115.54799 * 271.05527 * 25 4 2 48 48 H 1.08995 * 117.49989 * 359.97438 * 26 25 4 49 49 H 1.08993 * 117.49786 * 145.02175 * 26 25 4 50 50 H 1.09004 * 117.49864 * 214.98285 * 27 25 4 51 51 H 1.09007 * 117.50282 * 359.97438 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 1 3.0764 -0.8654 1.0396 6 6 1.6716 -0.0456 2.4211 7 8 0.6929 0.6677 2.4858 8 7 2.4695 -0.1940 3.4971 9 6 3.6829 -1.0318 3.5596 10 6 4.5380 -0.4130 4.7005 11 6 3.4484 0.0290 5.6872 12 6 3.0750 -1.0936 6.6648 13 6 2.5443 -0.3155 7.8912 14 7 3.0772 1.0535 7.8062 15 6 2.8256 2.0635 8.6962 16 1 3.2662 3.0379 8.5458 17 6 2.0044 1.8346 9.7916 18 7 1.4670 0.6472 9.9747 19 14 1.6618 3.2121 11.0061 20 1 0.4570 3.9650 10.5737 21 1 1.4281 2.6362 12.3547 22 1 2.8280 4.1302 11.0551 23 6 3.9284 1.1595 6.6032 24 6 2.2723 0.4488 4.8093 25 6 1.3551 -2.1554 1.1570 26 6 2.2921 -3.3649 1.1691 27 6 1.5047 -3.0196 -0.0965 28 1 -0.3633 0.5749 0.8519 29 1 -0.3634 0.4504 -0.9238 30 1 -0.3634 -1.0251 0.0719 31 1 3.0827 1.3433 -0.0709 32 1 1.5898 1.9163 -0.8525 33 1 1.7043 1.8724 0.9232 34 1 3.4196 -2.0625 3.7970 35 1 4.2237 -0.9863 2.6143 36 1 5.1129 0.4416 4.3438 37 1 5.1912 -1.1617 5.1486 38 1 2.2960 -1.7291 6.2439 39 1 3.9526 -1.6840 6.9284 40 1 1.4548 -0.2910 7.8713 41 1 2.8874 -0.7925 8.8093 42 1 0.8934 0.4872 10.7404 43 1 4.9766 1.0164 6.8657 44 1 3.7854 2.1263 6.1205 45 1 2.2603 1.5328 4.6952 46 1 1.3359 0.1107 5.2530 47 1 0.4223 -2.2353 1.7151 48 1 3.3646 -3.1707 1.1627 49 1 1.9758 -4.2408 1.7353 50 1 0.6704 -3.6686 -0.3629 51 1 2.0588 -2.5982 -0.9353 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041359983.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:05 Heat of formation + Delta-G solvation = 38.819944 kcal Electronic energy + Delta-G solvation = -29029.450965 eV Core-core repulsion = 25351.884398 eV Total energy + Delta-G solvation = -3677.566567 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.77650 -39.25005 -37.38881 -36.00871 -35.28751 -32.73085 -30.70410 -29.23837 -28.96375 -28.05678 -27.65277 -25.52209 -24.04204 -22.95725 -22.62178 -22.39799 -20.94124 -20.24975 -19.05209 -18.78427 -17.48683 -16.79373 -16.18407 -15.80213 -15.61731 -15.15517 -14.79642 -14.72721 -14.42900 -13.95885 -13.76790 -13.69720 -13.24086 -13.10296 -12.82291 -12.58985 -12.12986 -12.03311 -11.97502 -11.83124 -11.75836 -11.63549 -11.58993 -11.39623 -11.25775 -11.17220 -10.88965 -10.77090 -10.75334 -10.40337 -10.24402 -10.15014 -10.05116 -9.92161 -9.78611 -9.62523 -8.60226 -8.52006 -8.22429 -6.83096 -5.70650 -3.04151 2.58760 3.03481 3.40878 3.41025 3.45951 3.47601 3.99169 4.28627 4.49321 4.50106 4.63648 4.72438 4.78844 4.90178 4.95823 5.00157 5.11260 5.22714 5.29849 5.39252 5.44438 5.47213 5.48272 5.51745 5.55391 5.67819 5.79351 5.79760 5.83936 5.84663 5.89250 5.93784 5.98042 5.99796 6.10563 6.15328 6.22471 6.31640 6.33428 6.48990 6.54804 6.70627 6.75126 6.78716 6.83449 7.55841 7.60765 7.61477 7.82738 8.20274 8.25616 9.22344 9.82414 10.47955 11.41009 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.020050 B = 0.003172 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.153879 B = 8824.002654 C = 9295.544780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 N -0.514 5.514 3 C 0.011 3.989 4 C 0.101 3.899 5 H 0.100 0.900 6 C 0.503 3.497 7 O -0.541 6.541 8 N -0.611 5.611 9 C 0.101 3.899 10 C -0.119 4.119 11 C -0.082 4.082 12 C -0.130 4.130 13 C 0.178 3.822 14 N -0.605 5.605 15 C -0.228 4.228 16 H 0.077 0.923 17 C -0.008 4.008 18 N -0.922 5.922 19 Si 0.911 3.089 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.151 3.849 24 C 0.132 3.868 25 C -0.147 4.147 26 C -0.173 4.173 27 C -0.155 4.155 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.045 0.955 41 H 0.043 0.957 42 H 0.252 0.748 43 H 0.024 0.976 44 H 0.039 0.961 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.105 0.895 48 H 0.096 0.904 49 H 0.097 0.903 50 H 0.093 0.907 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.738 -8.123 -20.541 22.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 N -0.236 5.236 3 C -0.138 4.138 4 C -0.011 4.011 5 H 0.118 0.882 6 C 0.290 3.710 7 O -0.419 6.419 8 N -0.345 5.345 9 C -0.022 4.022 10 C -0.157 4.157 11 C -0.084 4.084 12 C -0.169 4.169 13 C 0.054 3.946 14 N -0.332 5.332 15 C -0.357 4.357 16 H 0.095 0.905 17 C -0.204 4.204 18 N -0.569 5.569 19 Si 0.742 3.258 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.025 3.975 24 C 0.010 3.990 25 C -0.166 4.166 26 C -0.211 4.211 27 C -0.192 4.192 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.042 0.958 44 H 0.057 0.943 45 H 0.086 0.914 46 H 0.090 0.910 47 H 0.124 0.876 48 H 0.115 0.885 49 H 0.115 0.885 50 H 0.111 0.889 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.184 -7.908 -20.812 22.654 hybrid contribution -0.491 1.101 1.558 1.970 sum 3.693 -6.807 -19.254 20.753 Atomic orbital electron populations 1.22689 0.86740 1.02729 1.02228 1.62587 1.09542 1.13936 1.37538 1.22526 1.00109 0.89133 1.01991 1.21428 1.00514 0.92522 0.86673 0.88249 1.21489 0.82464 0.82194 0.84836 1.90638 1.27486 1.40414 1.83378 1.48960 1.26578 1.46759 1.12192 1.22480 0.85493 0.94927 0.99261 1.22643 0.96970 1.00940 0.95146 1.21571 0.93951 0.98393 0.94474 1.22751 1.00296 0.96355 0.97459 1.21214 0.97418 0.83495 0.92492 1.44579 1.54874 1.08829 1.24913 1.19047 1.24476 0.90596 1.01536 0.90487 1.24788 0.99845 0.97014 0.98736 1.69959 1.36295 1.20296 1.30379 0.86131 0.78103 0.80992 0.80605 1.21613 1.21690 1.20714 1.21293 0.94048 0.94592 0.87589 1.21721 0.98755 0.97643 0.80897 1.21955 1.01234 0.89377 1.04071 1.23064 0.97859 0.98377 1.01768 1.22854 1.02766 1.01651 0.91905 0.91500 0.92166 0.91498 0.91799 0.91118 0.93817 0.90969 0.91174 0.90642 0.89637 0.92219 0.92017 0.93686 0.93893 0.93789 0.95800 0.94292 0.91353 0.90996 0.87645 0.88548 0.88490 0.88885 0.87901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.04 8.94 60.07 0.54 0.58 16 2 N -0.51 -5.85 4.89 -244.58 -1.20 -7.05 16 3 C 0.01 0.12 9.20 60.07 0.55 0.67 16 4 C 0.10 1.13 2.08 -68.87 -0.14 0.98 16 5 H 0.10 0.98 6.34 -51.93 -0.33 0.65 16 6 C 0.50 7.39 5.94 -10.98 -0.07 7.33 16 7 O -0.54 -9.91 12.81 5.56 0.07 -9.84 16 8 N -0.61 -8.70 3.34 -170.75 -0.57 -9.27 16 9 C 0.10 1.09 6.66 -2.16 -0.01 1.08 16 10 C -0.12 -1.41 6.07 -25.18 -0.15 -1.56 16 11 C -0.08 -1.34 0.61 -154.08 -0.09 -1.44 16 12 C -0.13 -2.30 5.79 -25.63 -0.15 -2.45 16 13 C 0.18 4.26 5.36 -2.83 -0.02 4.24 16 14 N -0.61 -15.24 3.41 -170.56 -0.58 -15.82 16 15 C -0.23 -6.37 10.28 -15.06 -0.15 -6.52 16 16 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 17 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 18 N -0.92 -27.17 10.30 55.49 0.57 -26.60 16 19 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C 0.15 3.01 6.26 -3.25 -0.02 2.99 16 24 C 0.13 2.28 6.07 -3.71 -0.02 2.26 16 25 C -0.15 -1.45 3.54 -90.62 -0.32 -1.77 16 26 C -0.17 -1.32 10.18 -26.73 -0.27 -1.60 16 27 C -0.15 -1.22 9.84 -26.73 -0.26 -1.48 16 28 H 0.07 0.98 5.54 -51.92 -0.29 0.69 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.74 6.28 -51.93 -0.33 0.41 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.04 0.61 6.10 -51.93 -0.32 0.29 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.59 6.78 -51.93 -0.35 0.24 16 36 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 37 H 0.09 0.90 7.76 -51.93 -0.40 0.49 16 38 H 0.06 1.00 7.94 -51.93 -0.41 0.59 16 39 H 0.06 0.99 7.80 -51.93 -0.40 0.59 16 40 H 0.04 1.21 7.39 -51.93 -0.38 0.83 16 41 H 0.04 1.14 7.49 -51.93 -0.39 0.75 16 42 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.02 0.47 8.05 -51.93 -0.42 0.05 16 44 H 0.04 0.78 7.66 -51.93 -0.40 0.38 16 45 H 0.07 1.30 7.58 -51.93 -0.39 0.91 16 46 H 0.07 1.43 7.78 -51.93 -0.40 1.03 16 47 H 0.11 1.20 7.93 -51.93 -0.41 0.79 16 48 H 0.10 0.65 8.04 -51.93 -0.42 0.23 16 49 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 51 H 0.10 0.82 8.14 -51.92 -0.42 0.40 16 LS Contribution 385.60 15.07 5.81 5.81 Total: -1.00 -31.85 385.60 -10.58 -42.44 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -8.97 Total: 0.03 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -0.69 Total: 3.00 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: -1.78 Total: -58.74 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.07 Total: -9.84 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.85 -10.58 -42.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041359983.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.258 kcal (2) G-P(sol) polarization free energy of solvation -31.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds