Wall clock time and date at job start Fri Apr 10 2020 18:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46901 * 110.99765 * 2 1 4 4 C 1.46892 * 110.99805 * 123.94948 * 2 1 3 5 5 H 1.09003 * 109.47366 * 172.32543 * 4 2 1 6 6 C 1.50702 * 109.47525 * 292.32626 * 4 2 1 7 7 O 1.21276 * 119.99735 * 27.96117 * 6 4 2 8 8 N 1.34778 * 120.00361 * 207.96270 * 6 4 2 9 9 C 1.47579 * 125.67202 * 359.69105 * 8 6 4 10 10 C 1.55429 * 104.91734 * 156.11329 * 9 8 6 11 11 C 1.53497 * 101.29939 * 35.62106 * 10 9 8 12 12 C 1.53468 * 111.80968 * 88.09132 * 11 10 9 13 13 C 1.54632 * 102.74656 * 154.35616 * 12 11 10 14 14 N 1.47154 * 107.33912 * 339.34523 * 13 12 11 15 15 C 1.36946 * 125.59574 * 179.10530 * 14 13 12 16 16 H 1.07997 * 119.99834 * 179.97438 * 15 14 13 17 17 C 1.38810 * 119.99937 * 359.97438 * 15 14 13 18 18 N 1.31618 * 120.00169 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99814 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46915 * 90.00147 * 19 17 15 21 21 H 1.48497 * 109.47260 * 210.00038 * 19 17 15 22 22 H 1.48501 * 109.47429 * 330.00250 * 19 17 15 23 23 C 1.47748 * 108.80741 * 359.08676 * 14 13 12 24 24 C 1.47443 * 125.67930 * 179.97438 * 8 6 4 25 25 C 1.53004 * 109.47377 * 52.32755 * 4 2 1 26 26 C 1.53001 * 117.49974 * 125.34372 * 25 4 2 27 27 C 1.52995 * 117.49672 * 56.71967 * 25 4 2 28 28 H 1.09008 * 109.46976 * 304.01217 * 1 2 3 29 29 H 1.09004 * 109.47147 * 64.00919 * 1 2 3 30 30 H 1.08997 * 109.47549 * 184.01265 * 1 2 3 31 31 H 1.08999 * 109.46964 * 183.95728 * 3 2 1 32 32 H 1.09005 * 109.47128 * 303.95016 * 3 2 1 33 33 H 1.08994 * 109.47426 * 63.95086 * 3 2 1 34 34 H 1.08997 * 110.32981 * 275.09367 * 9 8 6 35 35 H 1.09007 * 110.33203 * 37.31977 * 9 8 6 36 36 H 1.08997 * 111.23160 * 277.56140 * 10 9 8 37 37 H 1.08998 * 110.97267 * 153.56649 * 10 9 8 38 38 H 1.08996 * 110.75955 * 272.66811 * 12 11 10 39 39 H 1.09004 * 110.75631 * 35.85711 * 12 11 10 40 40 H 1.09001 * 109.87403 * 98.78375 * 13 12 11 41 41 H 1.08997 * 109.87003 * 219.76942 * 13 12 11 42 42 H 0.96997 * 120.00117 * 179.97438 * 18 17 15 43 43 H 1.08996 * 110.39920 * 263.54156 * 23 14 13 44 44 H 1.09001 * 110.40046 * 141.13859 * 23 14 13 45 45 H 1.09007 * 109.99513 * 301.51540 * 24 8 6 46 46 H 1.08993 * 109.99582 * 62.79809 * 24 8 6 47 47 H 1.09001 * 115.54799 * 271.05527 * 25 4 2 48 48 H 1.08995 * 117.49989 * 359.97438 * 26 25 4 49 49 H 1.08993 * 117.49786 * 145.02175 * 26 25 4 50 50 H 1.09004 * 117.49864 * 214.98285 * 27 25 4 51 51 H 1.09007 * 117.50282 * 359.97438 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 1 3.0764 -0.8654 1.0396 6 6 1.6716 -0.0456 2.4211 7 8 0.6929 0.6677 2.4858 8 7 2.4695 -0.1940 3.4971 9 6 3.6829 -1.0318 3.5596 10 6 4.5380 -0.4130 4.7005 11 6 3.4484 0.0290 5.6872 12 6 3.0750 -1.0936 6.6648 13 6 2.5443 -0.3155 7.8912 14 7 3.0772 1.0535 7.8062 15 6 2.8256 2.0635 8.6962 16 1 3.2662 3.0379 8.5458 17 6 2.0044 1.8346 9.7916 18 7 1.4670 0.6472 9.9747 19 14 1.6618 3.2121 11.0061 20 1 0.4570 3.9650 10.5737 21 1 1.4281 2.6362 12.3547 22 1 2.8280 4.1302 11.0551 23 6 3.9284 1.1595 6.6032 24 6 2.2723 0.4488 4.8093 25 6 1.3551 -2.1554 1.1570 26 6 2.2921 -3.3649 1.1691 27 6 1.5047 -3.0196 -0.0965 28 1 -0.3633 0.5749 0.8519 29 1 -0.3634 0.4504 -0.9238 30 1 -0.3634 -1.0251 0.0719 31 1 3.0827 1.3433 -0.0709 32 1 1.5898 1.9163 -0.8525 33 1 1.7043 1.8724 0.9232 34 1 3.4196 -2.0625 3.7970 35 1 4.2237 -0.9863 2.6143 36 1 5.1129 0.4416 4.3438 37 1 5.1912 -1.1617 5.1486 38 1 2.2960 -1.7291 6.2439 39 1 3.9526 -1.6840 6.9284 40 1 1.4548 -0.2910 7.8713 41 1 2.8874 -0.7925 8.8093 42 1 0.8934 0.4872 10.7404 43 1 4.9766 1.0164 6.8657 44 1 3.7854 2.1263 6.1205 45 1 2.2603 1.5328 4.6952 46 1 1.3359 0.1107 5.2530 47 1 0.4223 -2.2353 1.7151 48 1 3.3646 -3.1707 1.1627 49 1 1.9758 -4.2408 1.7353 50 1 0.6704 -3.6686 -0.3629 51 1 2.0588 -2.5982 -0.9353 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041359983.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:04 Heat of formation + Delta-G solvation = 17.771183 kcal Electronic energy + Delta-G solvation = -29030.363707 eV Core-core repulsion = 25351.884398 eV Total energy + Delta-G solvation = -3678.479310 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.89103 -40.50503 -38.37946 -37.35598 -36.30135 -34.52601 -32.28647 -30.67397 -30.26608 -29.32359 -28.58305 -27.19789 -25.65300 -23.85423 -23.71826 -23.04530 -22.14984 -21.83418 -20.29554 -19.94215 -18.88095 -18.41558 -17.22508 -16.85549 -16.79016 -16.56194 -16.11466 -15.98394 -15.68099 -15.56782 -14.99197 -14.66576 -14.50731 -14.28771 -14.17001 -13.84513 -13.71700 -13.22818 -13.12866 -13.05679 -12.97950 -12.83870 -12.76081 -12.61818 -12.50014 -12.49176 -12.20573 -12.06594 -12.04220 -11.88421 -11.64155 -11.53628 -11.44423 -11.24059 -11.05648 -11.02627 -10.72560 -9.71390 -9.25235 -8.90404 -7.87110 -5.22061 1.42049 1.44320 1.48164 1.52669 1.92039 2.46972 2.67286 3.21745 3.28115 3.36578 3.49347 3.61662 3.70280 3.74612 3.80976 4.03891 4.11653 4.17680 4.23460 4.28951 4.34355 4.43035 4.45434 4.55773 4.60179 4.62612 4.70532 4.72154 4.79190 4.87520 4.89302 4.92556 4.93861 4.96745 5.00062 5.05466 5.09132 5.13411 5.23599 5.25780 5.30434 5.36540 5.40850 5.43314 5.66294 5.76130 5.83594 5.90130 6.17862 6.51787 7.08213 7.08623 7.76153 8.39945 9.23048 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.020050 B = 0.003172 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.153879 B = 8824.002654 C = 9295.544780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.507 5.507 3 C 0.012 3.988 4 C 0.112 3.888 5 H 0.126 0.874 6 C 0.496 3.504 7 O -0.588 6.588 8 N -0.610 5.610 9 C 0.099 3.901 10 C -0.107 4.107 11 C -0.071 4.071 12 C -0.111 4.111 13 C 0.186 3.814 14 N -0.628 5.628 15 C -0.242 4.242 16 H 0.081 0.919 17 C -0.067 4.067 18 N -0.951 5.951 19 Si 0.976 3.024 20 H -0.291 1.291 21 H -0.292 1.292 22 H -0.266 1.266 23 C 0.147 3.853 24 C 0.139 3.861 25 C -0.169 4.169 26 C -0.156 4.156 27 C -0.144 4.144 28 H 0.032 0.968 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.010 0.990 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.087 0.913 37 H 0.114 0.886 38 H 0.069 0.931 39 H 0.091 0.909 40 H -0.002 1.002 41 H 0.009 0.991 42 H 0.245 0.755 43 H 0.043 0.957 44 H 0.033 0.967 45 H 0.040 0.960 46 H 0.032 0.968 47 H 0.081 0.919 48 H 0.117 0.883 49 H 0.102 0.898 50 H 0.098 0.902 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.733 -9.629 -23.127 26.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.228 5.228 3 C -0.136 4.136 4 C 0.000 4.000 5 H 0.143 0.857 6 C 0.285 3.715 7 O -0.469 6.469 8 N -0.343 5.343 9 C -0.022 4.022 10 C -0.145 4.145 11 C -0.072 4.072 12 C -0.149 4.149 13 C 0.061 3.939 14 N -0.355 5.355 15 C -0.371 4.371 16 H 0.099 0.901 17 C -0.260 4.260 18 N -0.600 5.600 19 Si 0.804 3.196 20 H -0.218 1.218 21 H -0.219 1.219 22 H -0.191 1.191 23 C 0.022 3.978 24 C 0.016 3.984 25 C -0.189 4.189 26 C -0.193 4.193 27 C -0.181 4.181 28 H 0.051 0.949 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.029 0.971 34 H 0.108 0.892 35 H 0.126 0.874 36 H 0.106 0.894 37 H 0.132 0.868 38 H 0.088 0.912 39 H 0.110 0.890 40 H 0.016 0.984 41 H 0.027 0.973 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.051 0.949 45 H 0.059 0.941 46 H 0.050 0.950 47 H 0.099 0.901 48 H 0.135 0.865 49 H 0.121 0.879 50 H 0.117 0.883 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.233 -9.426 -23.439 26.279 hybrid contribution -1.468 1.616 2.333 3.196 sum 5.765 -7.810 -21.106 23.231 Atomic orbital electron populations 1.22608 0.87324 1.02583 1.01381 1.62677 1.08991 1.13950 1.37196 1.22548 1.01378 0.88891 1.00775 1.21535 1.01914 0.92513 0.84073 0.85651 1.22370 0.81656 0.81567 0.85901 1.90634 1.29596 1.42444 1.84254 1.49052 1.27832 1.46810 1.10614 1.22795 0.83801 0.94817 1.00795 1.22685 0.95786 1.02248 0.93756 1.21417 0.95211 0.96246 0.94375 1.22579 1.01446 0.96239 0.94618 1.20955 0.94836 0.83953 0.94202 1.44897 1.55648 1.08783 1.26158 1.19455 1.24018 0.91559 1.02038 0.90132 1.25635 1.00256 0.99330 1.00802 1.70195 1.37041 1.22142 1.30645 0.85113 0.78068 0.78393 0.77993 1.21799 1.21880 1.19087 1.21519 0.94065 0.95917 0.86341 1.21367 0.97712 0.96226 0.83109 1.21818 1.01374 0.89503 1.06159 1.23206 0.98497 0.96785 1.00819 1.22904 1.03027 1.00561 0.91609 0.94911 0.90795 0.90932 0.89770 0.89979 0.97147 0.89247 0.87390 0.89393 0.86754 0.91229 0.89003 0.98367 0.97323 0.94540 0.93912 0.94899 0.94105 0.94954 0.90118 0.86496 0.87935 0.88332 0.87407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 8.94 127.69 1.14 1.35 16 2 N -0.51 -10.67 4.89 -927.71 -4.54 -15.20 16 3 C 0.01 0.26 9.20 127.69 1.17 1.43 16 4 C 0.11 2.24 2.08 44.17 0.09 2.33 16 5 H 0.13 1.86 6.34 -2.39 -0.02 1.84 16 6 C 0.50 14.43 5.94 87.66 0.52 14.95 16 7 O -0.59 -22.75 12.81 -3.02 -0.04 -22.79 16 8 N -0.61 -16.65 3.34 -812.52 -2.72 -19.36 16 9 C 0.10 1.68 6.66 87.01 0.58 2.26 16 10 C -0.11 -2.06 6.07 31.60 0.19 -1.86 16 11 C -0.07 -2.22 0.61 -51.90 -0.03 -2.26 16 12 C -0.11 -3.81 5.79 31.31 0.18 -3.63 16 13 C 0.19 9.26 5.36 86.81 0.47 9.73 16 14 N -0.63 -32.64 3.41 -693.53 -2.36 -35.00 16 15 C -0.24 -13.90 10.28 84.03 0.86 -13.03 16 16 H 0.08 4.44 7.83 -2.91 -0.02 4.41 16 17 C -0.07 -3.95 5.49 84.86 0.47 -3.49 16 18 N -0.95 -58.90 10.30 21.65 0.22 -58.68 16 19 Si 0.98 47.22 29.55 68.60 2.03 49.25 16 20 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 21 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 23 C 0.15 5.78 6.26 86.21 0.54 6.32 16 24 C 0.14 4.96 6.07 86.08 0.52 5.49 16 25 C -0.17 -2.95 3.54 -10.79 -0.04 -2.99 16 26 C -0.16 -1.72 10.18 30.60 0.31 -1.41 16 27 C -0.14 -1.79 9.84 30.59 0.30 -1.49 16 28 H 0.03 1.01 5.54 -2.38 -0.01 1.00 16 29 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.07 1.58 6.28 -2.39 -0.02 1.56 16 31 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.01 0.28 6.10 -2.39 -0.01 0.27 16 34 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.11 1.12 6.78 -2.38 -0.02 1.10 16 36 H 0.09 1.56 8.09 -2.39 -0.02 1.54 16 37 H 0.11 1.67 7.76 -2.39 -0.02 1.65 16 38 H 0.07 2.27 7.94 -2.39 -0.02 2.25 16 39 H 0.09 2.65 7.80 -2.39 -0.02 2.63 16 40 H 0.00 -0.11 7.39 -2.39 -0.02 -0.13 16 41 H 0.01 0.48 7.49 -2.39 -0.02 0.46 16 42 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 43 H 0.04 1.57 8.05 -2.39 -0.02 1.55 16 44 H 0.03 1.33 7.66 -2.39 -0.02 1.31 16 45 H 0.04 1.65 7.58 -2.38 -0.02 1.63 16 46 H 0.03 1.38 7.78 -2.39 -0.02 1.36 16 47 H 0.08 1.82 7.93 -2.39 -0.02 1.80 16 48 H 0.12 0.85 8.04 -2.39 -0.02 0.84 16 49 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 51 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 Total: -1.00 -76.82 385.60 0.77 -76.06 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 0.89 Total: 12.02 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: 7.28 Total: 13.71 kcal Atomic # 7 Polarization: -118.85 SS G_CDS: -9.39 Total: -128.25 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.04 Total: -22.79 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -76.82 0.77 -76.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041359983.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.828 kcal (2) G-P(sol) polarization free energy of solvation -76.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds