Wall clock time and date at job start Fri Apr 10 2020 18:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46845 * 110.99994 * 2 1 4 4 C 1.53043 * 109.52557 * 185.84249 * 3 2 1 5 5 C 1.53123 * 109.27280 * 300.81993 * 4 3 2 6 6 C 1.50697 * 109.52293 * 177.56112 * 5 4 3 7 7 O 1.21287 * 119.99574 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00305 * 179.97438 * 6 5 4 9 9 C 1.48247 * 127.00583 * 359.97438 * 8 6 5 10 10 C 1.55261 * 103.45388 * 218.46295 * 9 8 6 11 11 C 1.53221 * 102.46914 * 323.83277 * 10 9 8 12 12 C 1.53724 * 111.52885 * 143.29630 * 11 10 9 13 13 C 1.54577 * 102.78660 * 153.98911 * 12 11 10 14 14 N 1.47138 * 107.32873 * 339.11010 * 13 12 11 15 15 C 1.36935 * 125.60658 * 179.08531 * 14 13 12 16 16 H 1.08009 * 119.99648 * 179.97438 * 15 14 13 17 17 C 1.38810 * 120.00219 * 359.97438 * 15 14 13 18 18 N 1.31616 * 119.99707 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99780 * 180.02562 * 17 15 14 20 20 H 1.48488 * 109.47324 * 60.00113 * 19 17 15 21 21 H 1.48501 * 109.46830 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47174 * 299.99743 * 19 17 15 23 23 C 1.47712 * 108.78179 * 359.06739 * 14 13 12 24 24 C 1.47885 * 127.00916 * 179.97438 * 8 6 5 25 25 C 1.53114 * 109.16321 * 57.65207 * 5 4 3 26 26 C 1.46839 * 111.00239 * 124.20860 * 2 1 3 27 27 H 1.09008 * 109.47175 * 60.00397 * 1 2 3 28 28 H 1.08998 * 109.47399 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47465 * 300.00123 * 1 2 3 30 30 H 1.09000 * 109.46571 * 65.82345 * 3 2 1 31 31 H 1.09004 * 109.46074 * 305.85349 * 3 2 1 32 32 H 1.08995 * 109.50677 * 180.88259 * 4 3 2 33 33 H 1.08998 * 109.53565 * 60.77893 * 4 3 2 34 34 H 1.09005 * 109.52094 * 297.68254 * 5 4 3 35 35 H 1.09001 * 110.62246 * 99.97405 * 9 8 6 36 36 H 1.08988 * 110.76396 * 337.02326 * 9 8 6 37 37 H 1.09006 * 110.80414 * 205.58905 * 10 9 8 38 38 H 1.09000 * 110.97773 * 82.15604 * 10 9 8 39 39 H 1.08999 * 110.74954 * 272.32173 * 12 11 10 40 40 H 1.09001 * 110.74535 * 35.48471 * 12 11 10 41 41 H 1.09002 * 109.87043 * 98.54095 * 13 12 11 42 42 H 1.08992 * 109.87777 * 219.53029 * 13 12 11 43 43 H 0.97006 * 119.99702 * 179.97438 * 18 17 15 44 44 H 1.08996 * 110.38541 * 263.79575 * 23 14 13 45 45 H 1.09001 * 110.38937 * 141.41768 * 23 14 13 46 46 H 1.09000 * 110.04811 * 35.54140 * 24 8 6 47 47 H 1.09002 * 110.04941 * 274.07452 * 24 8 6 48 48 H 1.09003 * 109.49951 * 62.28591 * 25 5 4 49 49 H 1.08998 * 109.50613 * 182.40260 * 25 5 4 50 50 H 1.09006 * 109.46626 * 294.17858 * 26 2 1 51 51 H 1.09003 * 109.46123 * 54.14490 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 -0.1468 5 6 4.1187 0.5370 1.0143 6 6 5.6132 0.4464 0.8432 7 8 6.1467 0.9674 -0.1134 8 7 6.3569 -0.2136 1.7529 9 6 5.8709 -0.9026 2.9723 10 6 6.9664 -0.5872 4.0263 11 6 8.2489 -0.6130 3.1884 12 6 9.2502 0.4555 3.6564 13 6 10.6104 -0.1369 3.2227 14 7 10.4220 -1.5858 3.0488 15 6 11.3862 -2.4732 2.6514 16 1 11.1475 -3.5220 2.5535 17 6 12.6703 -2.0248 2.3743 18 7 12.9610 -0.7466 2.4931 19 14 13.9854 -3.2353 1.8315 20 1 13.5582 -3.8993 0.5739 21 1 15.2606 -2.5101 1.6005 22 1 14.1832 -4.2586 2.8892 23 6 9.0217 -1.9257 3.3739 24 6 7.8242 -0.3980 1.7384 25 6 3.5180 -0.8714 1.0209 26 6 1.9952 -0.7707 1.1337 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.7324 1.8609 0.9376 31 1 1.5633 1.9257 -0.8330 32 1 3.9099 2.3512 -0.1311 33 1 3.7819 0.8572 -1.0907 34 1 3.8896 1.0361 1.9559 35 1 5.7988 -1.9770 2.8032 36 1 4.9084 -0.4992 3.2864 37 1 6.9931 -1.3557 4.7989 38 1 6.8117 0.3976 4.4673 39 1 9.0646 1.4050 3.1543 40 1 9.2065 0.5778 4.7387 41 1 10.9263 0.3113 2.2807 42 1 11.3591 0.0518 3.9920 43 1 13.8585 -0.4333 2.2999 44 1 8.9441 -2.2696 4.4052 45 1 8.6470 -2.6869 2.6896 46 1 8.3086 0.4912 1.3350 47 1 8.0852 -1.2705 1.1393 48 1 3.7813 -1.3835 0.0953 49 1 3.9098 -1.4302 1.8708 50 1 1.7324 -0.2708 2.0660 51 1 1.5634 -1.7715 1.1242 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041629696.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:18 Heat of formation + Delta-G solvation = -2.522237 kcal Electronic energy + Delta-G solvation = -28473.321377 eV Core-core repulsion = 24793.962078 eV Total energy + Delta-G solvation = -3679.359298 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.56540 -39.21869 -37.95353 -35.67043 -33.85404 -32.60484 -31.16208 -30.46560 -29.25789 -28.29455 -27.35696 -25.55353 -24.50819 -23.46571 -23.04660 -22.31770 -20.33948 -20.20078 -19.12508 -18.74422 -17.10002 -16.56144 -16.27832 -15.68821 -15.48346 -15.36008 -14.91304 -14.65128 -14.19599 -13.99142 -13.81161 -13.75965 -13.44918 -13.15530 -12.83071 -12.76301 -12.68268 -12.40162 -12.09096 -11.95571 -11.89574 -11.56115 -11.42275 -11.35797 -11.28037 -11.21476 -10.89724 -10.84999 -10.75372 -10.68055 -10.19144 -9.99381 -9.96277 -9.78470 -9.61784 -9.52194 -8.67288 -8.58611 -8.49571 -6.81154 -5.68491 -3.02187 2.74244 3.06405 3.42586 3.46804 3.48118 3.58754 4.31201 4.45990 4.51319 4.55708 4.71716 4.79773 4.83255 4.93740 4.97484 5.04373 5.09181 5.17004 5.25106 5.29689 5.33607 5.38791 5.44348 5.49995 5.51197 5.51859 5.54473 5.66067 5.78137 5.81547 5.85395 5.94723 5.95423 6.06004 6.15370 6.21005 6.24436 6.36943 6.38660 6.51764 6.63256 6.71299 6.71622 6.73952 6.83675 7.57756 7.64861 7.69951 7.85377 8.28026 8.29385 9.24236 9.84531 10.50405 11.43041 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.026263 B = 0.002641 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.864899 B =10601.265524 C =10693.636660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.056 3.944 4 C -0.097 4.097 5 C -0.102 4.102 6 C 0.533 3.467 7 O -0.541 6.541 8 N -0.620 5.620 9 C 0.099 3.901 10 C -0.120 4.120 11 C -0.085 4.085 12 C -0.132 4.132 13 C 0.178 3.822 14 N -0.605 5.605 15 C -0.229 4.229 16 H 0.077 0.923 17 C -0.008 4.008 18 N -0.922 5.922 19 Si 0.911 3.089 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.286 1.286 23 C 0.150 3.850 24 C 0.131 3.869 25 C -0.113 4.113 26 C 0.058 3.942 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.024 0.976 30 H 0.033 0.967 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.046 0.954 42 H 0.042 0.958 43 H 0.253 0.747 44 H 0.022 0.978 45 H 0.039 0.961 46 H 0.077 0.923 47 H 0.072 0.928 48 H 0.078 0.922 49 H 0.078 0.922 50 H 0.034 0.966 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.173 2.550 1.501 25.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.270 5.270 3 C -0.071 4.071 4 C -0.135 4.135 5 C -0.124 4.124 6 C 0.322 3.678 7 O -0.418 6.418 8 N -0.354 5.354 9 C -0.024 4.024 10 C -0.158 4.158 11 C -0.087 4.087 12 C -0.170 4.170 13 C 0.053 3.947 14 N -0.332 5.332 15 C -0.357 4.357 16 H 0.095 0.905 17 C -0.204 4.204 18 N -0.569 5.569 19 Si 0.742 3.258 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 C 0.024 3.976 24 C 0.009 3.991 25 C -0.151 4.151 26 C -0.070 4.070 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.051 0.949 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.040 0.960 45 H 0.057 0.943 46 H 0.095 0.905 47 H 0.090 0.910 48 H 0.096 0.904 49 H 0.097 0.903 50 H 0.053 0.947 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -24.534 2.669 0.406 24.682 hybrid contribution 0.539 -0.234 0.584 0.829 sum -23.995 2.436 0.990 24.139 Atomic orbital electron populations 1.22346 0.87223 1.02089 1.00623 1.61916 1.07555 1.14028 1.43476 1.22135 0.95531 0.88895 1.00572 1.21412 0.93027 1.00580 0.98467 1.21320 0.91527 0.98414 1.01108 1.20180 0.88582 0.77553 0.81499 1.90714 1.73809 1.46850 1.30426 1.49053 1.08779 1.53235 1.24327 1.22691 0.97758 0.97261 0.84694 1.22587 0.93765 1.02412 0.97072 1.21614 0.94481 0.98995 0.93585 1.22817 0.97532 0.96769 0.99887 1.21206 0.90373 0.83261 0.99849 1.44565 1.05029 1.03999 1.79557 1.18991 0.89000 0.89401 1.38348 0.90547 1.24796 0.97472 0.96270 1.01861 1.69956 1.19801 1.12365 1.54778 0.86208 0.81194 0.79900 0.78508 1.21170 1.21629 1.21219 1.21448 0.86019 0.92753 0.97372 1.21878 0.78357 1.02473 0.96383 1.21721 0.94411 0.95221 1.03776 1.22082 0.95060 0.98434 0.91377 0.91318 0.91348 0.95758 0.94877 0.90365 0.90697 0.90080 0.89151 0.90758 0.90560 0.89831 0.90894 0.92143 0.92159 0.93601 0.93955 0.93715 0.96010 0.94308 0.90477 0.91024 0.90373 0.90331 0.94738 0.90343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.59 60.06 0.58 0.74 16 2 N -0.54 -4.67 4.91 -242.97 -1.19 -5.86 16 3 C 0.06 0.48 5.46 -3.83 -0.02 0.46 16 4 C -0.10 -1.03 4.68 -26.65 -0.12 -1.15 16 5 C -0.10 -1.09 1.90 -91.65 -0.17 -1.26 16 6 C 0.53 7.94 7.25 -10.99 -0.08 7.86 16 7 O -0.54 -10.36 16.33 5.55 0.09 -10.27 16 8 N -0.62 -8.87 3.31 -169.97 -0.56 -9.43 16 9 C 0.10 1.05 5.29 -1.88 -0.01 1.04 16 10 C -0.12 -1.44 6.20 -25.42 -0.16 -1.60 16 11 C -0.09 -1.40 0.74 -153.98 -0.11 -1.52 16 12 C -0.13 -2.42 5.74 -25.53 -0.15 -2.57 16 13 C 0.18 4.30 5.34 -2.86 -0.02 4.29 16 14 N -0.60 -15.23 3.41 -170.50 -0.58 -15.81 16 15 C -0.23 -6.37 10.28 -15.06 -0.15 -6.53 16 16 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 17 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 18 N -0.92 -27.33 10.30 55.49 0.57 -26.76 16 19 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 C 0.15 2.96 6.12 -3.14 -0.02 2.94 16 24 C 0.13 2.28 6.27 -3.48 -0.02 2.26 16 25 C -0.11 -1.03 5.10 -26.65 -0.14 -1.16 16 26 C 0.06 0.45 5.46 -3.84 -0.02 0.43 16 27 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 28 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 29 H 0.02 0.15 8.14 -51.93 -0.42 -0.28 16 30 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.60 8.12 -51.93 -0.42 0.18 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 1.02 8.04 -51.93 -0.42 0.60 16 34 H 0.09 0.83 7.90 -51.93 -0.41 0.42 16 35 H 0.07 0.73 7.98 -51.93 -0.41 0.32 16 36 H 0.08 0.62 6.56 -51.94 -0.34 0.27 16 37 H 0.08 0.90 7.60 -51.93 -0.39 0.51 16 38 H 0.07 0.83 7.92 -51.93 -0.41 0.42 16 39 H 0.06 1.07 7.72 -51.93 -0.40 0.67 16 40 H 0.06 1.02 8.04 -51.93 -0.42 0.60 16 41 H 0.05 1.25 7.39 -51.93 -0.38 0.86 16 42 H 0.04 1.14 7.49 -51.93 -0.39 0.75 16 43 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 44 H 0.02 0.42 7.74 -51.93 -0.40 0.02 16 45 H 0.04 0.75 7.72 -51.93 -0.40 0.35 16 46 H 0.08 1.52 7.42 -51.93 -0.39 1.14 16 47 H 0.07 1.37 7.51 -51.93 -0.39 0.98 16 48 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.08 0.62 5.39 -51.93 -0.28 0.34 16 50 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 51 H 0.08 0.54 8.09 -51.93 -0.42 0.12 16 LS Contribution 381.78 15.07 5.75 5.75 Total: -1.00 -32.73 381.78 -10.84 -43.58 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -9.18 Total: -2.42 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -0.72 Total: 3.92 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: -1.76 Total: -57.85 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.73 -10.84 -43.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041629696.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.053 kcal (2) G-P(sol) polarization free energy of solvation -32.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds