Wall clock time and date at job start Fri Apr 10 2020 18:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46845 * 110.99994 * 2 1 4 4 C 1.53043 * 109.52557 * 185.84249 * 3 2 1 5 5 C 1.53123 * 109.27280 * 300.81993 * 4 3 2 6 6 C 1.50697 * 109.52293 * 177.56112 * 5 4 3 7 7 O 1.21287 * 119.99574 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00305 * 179.97438 * 6 5 4 9 9 C 1.48247 * 127.00583 * 359.97438 * 8 6 5 10 10 C 1.55261 * 103.45388 * 218.46295 * 9 8 6 11 11 C 1.53221 * 102.46914 * 323.83277 * 10 9 8 12 12 C 1.53724 * 111.52885 * 143.29630 * 11 10 9 13 13 C 1.54577 * 102.78660 * 153.98911 * 12 11 10 14 14 N 1.47138 * 107.32873 * 339.11010 * 13 12 11 15 15 C 1.36935 * 125.60658 * 179.08531 * 14 13 12 16 16 H 1.08009 * 119.99648 * 179.97438 * 15 14 13 17 17 C 1.38810 * 120.00219 * 359.97438 * 15 14 13 18 18 N 1.31616 * 119.99707 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99780 * 180.02562 * 17 15 14 20 20 H 1.48488 * 109.47324 * 60.00113 * 19 17 15 21 21 H 1.48501 * 109.46830 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47174 * 299.99743 * 19 17 15 23 23 C 1.47712 * 108.78179 * 359.06739 * 14 13 12 24 24 C 1.47885 * 127.00916 * 179.97438 * 8 6 5 25 25 C 1.53114 * 109.16321 * 57.65207 * 5 4 3 26 26 C 1.46839 * 111.00239 * 124.20860 * 2 1 3 27 27 H 1.09008 * 109.47175 * 60.00397 * 1 2 3 28 28 H 1.08998 * 109.47399 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47465 * 300.00123 * 1 2 3 30 30 H 1.09000 * 109.46571 * 65.82345 * 3 2 1 31 31 H 1.09004 * 109.46074 * 305.85349 * 3 2 1 32 32 H 1.08995 * 109.50677 * 180.88259 * 4 3 2 33 33 H 1.08998 * 109.53565 * 60.77893 * 4 3 2 34 34 H 1.09005 * 109.52094 * 297.68254 * 5 4 3 35 35 H 1.09001 * 110.62246 * 99.97405 * 9 8 6 36 36 H 1.08988 * 110.76396 * 337.02326 * 9 8 6 37 37 H 1.09006 * 110.80414 * 205.58905 * 10 9 8 38 38 H 1.09000 * 110.97773 * 82.15604 * 10 9 8 39 39 H 1.08999 * 110.74954 * 272.32173 * 12 11 10 40 40 H 1.09001 * 110.74535 * 35.48471 * 12 11 10 41 41 H 1.09002 * 109.87043 * 98.54095 * 13 12 11 42 42 H 1.08992 * 109.87777 * 219.53029 * 13 12 11 43 43 H 0.97006 * 119.99702 * 179.97438 * 18 17 15 44 44 H 1.08996 * 110.38541 * 263.79575 * 23 14 13 45 45 H 1.09001 * 110.38937 * 141.41768 * 23 14 13 46 46 H 1.09000 * 110.04811 * 35.54140 * 24 8 6 47 47 H 1.09002 * 110.04941 * 274.07452 * 24 8 6 48 48 H 1.09003 * 109.49951 * 62.28591 * 25 5 4 49 49 H 1.08998 * 109.50613 * 182.40260 * 25 5 4 50 50 H 1.09006 * 109.46626 * 294.17858 * 26 2 1 51 51 H 1.09003 * 109.46123 * 54.14490 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 -0.1468 5 6 4.1187 0.5370 1.0143 6 6 5.6132 0.4464 0.8432 7 8 6.1467 0.9674 -0.1134 8 7 6.3569 -0.2136 1.7529 9 6 5.8709 -0.9026 2.9723 10 6 6.9664 -0.5872 4.0263 11 6 8.2489 -0.6130 3.1884 12 6 9.2502 0.4555 3.6564 13 6 10.6104 -0.1369 3.2227 14 7 10.4220 -1.5858 3.0488 15 6 11.3862 -2.4732 2.6514 16 1 11.1475 -3.5220 2.5535 17 6 12.6703 -2.0248 2.3743 18 7 12.9610 -0.7466 2.4931 19 14 13.9854 -3.2353 1.8315 20 1 13.5582 -3.8993 0.5739 21 1 15.2606 -2.5101 1.6005 22 1 14.1832 -4.2586 2.8892 23 6 9.0217 -1.9257 3.3739 24 6 7.8242 -0.3980 1.7384 25 6 3.5180 -0.8714 1.0209 26 6 1.9952 -0.7707 1.1337 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.7324 1.8609 0.9376 31 1 1.5633 1.9257 -0.8330 32 1 3.9099 2.3512 -0.1311 33 1 3.7819 0.8572 -1.0907 34 1 3.8896 1.0361 1.9559 35 1 5.7988 -1.9770 2.8032 36 1 4.9084 -0.4992 3.2864 37 1 6.9931 -1.3557 4.7989 38 1 6.8117 0.3976 4.4673 39 1 9.0646 1.4050 3.1543 40 1 9.2065 0.5778 4.7387 41 1 10.9263 0.3113 2.2807 42 1 11.3591 0.0518 3.9920 43 1 13.8585 -0.4333 2.2999 44 1 8.9441 -2.2696 4.4052 45 1 8.6470 -2.6869 2.6896 46 1 8.3086 0.4912 1.3350 47 1 8.0852 -1.2705 1.1393 48 1 3.7813 -1.3835 0.0953 49 1 3.9098 -1.4302 1.8708 50 1 1.7324 -0.2708 2.0660 51 1 1.5634 -1.7715 1.1242 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041629696.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:17 Heat of formation + Delta-G solvation = -24.614045 kcal Electronic energy + Delta-G solvation = -28474.279349 eV Core-core repulsion = 24793.962078 eV Total energy + Delta-G solvation = -3680.317271 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.70106 -40.32931 -39.01386 -37.20217 -34.82883 -34.25074 -32.16688 -31.72289 -30.83789 -29.60754 -28.33443 -27.12554 -25.92088 -24.28546 -23.90622 -23.46213 -22.10143 -21.09715 -20.25374 -20.05277 -18.82660 -17.95527 -17.18133 -16.84895 -16.67385 -16.45097 -16.01288 -15.73644 -15.55737 -15.44149 -15.05331 -14.83557 -14.52608 -14.33813 -14.13519 -13.79934 -13.61252 -13.46606 -13.30084 -13.19025 -13.00186 -12.90589 -12.82592 -12.54844 -12.52778 -12.45003 -12.21657 -12.11190 -12.08032 -11.81765 -11.68690 -11.56620 -11.42569 -11.31191 -11.24745 -10.72938 -10.69731 -9.73087 -9.21978 -8.88565 -7.84662 -5.19752 1.43805 1.47527 1.53473 1.59516 1.93651 2.49254 3.02756 3.31289 3.39680 3.54932 3.61771 3.65874 3.77435 3.86256 3.87900 4.17056 4.19819 4.24968 4.28639 4.37590 4.43583 4.45878 4.56718 4.59767 4.60348 4.64916 4.72684 4.75751 4.78237 4.80832 4.90249 4.92872 4.96801 4.99521 5.00579 5.08404 5.09400 5.09912 5.17922 5.22246 5.30445 5.35719 5.43760 5.47137 5.66635 5.76882 6.15917 6.19093 6.19749 6.58429 7.10149 7.13085 7.78615 8.42936 9.25651 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.026263 B = 0.002641 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.864899 B =10601.265524 C =10693.636660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.566 5.566 3 C 0.064 3.936 4 C -0.096 4.096 5 C -0.091 4.091 6 C 0.526 3.474 7 O -0.597 6.597 8 N -0.617 5.617 9 C 0.098 3.902 10 C -0.109 4.109 11 C -0.073 4.073 12 C -0.117 4.117 13 C 0.186 3.814 14 N -0.628 5.628 15 C -0.239 4.239 16 H 0.084 0.916 17 C -0.071 4.071 18 N -0.954 5.954 19 Si 0.977 3.023 20 H -0.279 1.279 21 H -0.297 1.297 22 H -0.273 1.273 23 C 0.147 3.853 24 C 0.136 3.864 25 C -0.108 4.108 26 C 0.061 3.939 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.033 0.967 30 H 0.048 0.952 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.051 0.949 34 H 0.120 0.880 35 H 0.089 0.911 36 H 0.118 0.882 37 H 0.108 0.892 38 H 0.089 0.911 39 H 0.064 0.936 40 H 0.086 0.914 41 H -0.001 1.001 42 H 0.006 0.994 43 H 0.245 0.755 44 H 0.043 0.957 45 H 0.041 0.959 46 H 0.041 0.959 47 H 0.045 0.955 48 H 0.053 0.947 49 H 0.098 0.902 50 H 0.052 0.948 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.846 1.359 3.809 29.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.292 5.292 3 C -0.064 4.064 4 C -0.134 4.134 5 C -0.112 4.112 6 C 0.316 3.684 7 O -0.478 6.478 8 N -0.350 5.350 9 C -0.023 4.023 10 C -0.147 4.147 11 C -0.075 4.075 12 C -0.155 4.155 13 C 0.061 3.939 14 N -0.354 5.354 15 C -0.368 4.368 16 H 0.102 0.898 17 C -0.263 4.263 18 N -0.603 5.603 19 Si 0.806 3.194 20 H -0.206 1.206 21 H -0.223 1.223 22 H -0.199 1.199 23 C 0.023 3.977 24 C 0.012 3.988 25 C -0.146 4.146 26 C -0.067 4.067 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.137 0.863 35 H 0.107 0.893 36 H 0.136 0.864 37 H 0.127 0.873 38 H 0.108 0.892 39 H 0.083 0.917 40 H 0.104 0.896 41 H 0.017 0.983 42 H 0.025 0.975 43 H 0.054 0.946 44 H 0.061 0.939 45 H 0.059 0.941 46 H 0.060 0.940 47 H 0.063 0.937 48 H 0.072 0.928 49 H 0.116 0.884 50 H 0.070 0.930 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -28.273 1.437 2.754 28.443 hybrid contribution 1.683 0.118 -0.193 1.698 sum -26.590 1.555 2.562 26.758 Atomic orbital electron populations 1.22364 0.85851 1.02750 1.01138 1.61891 1.08895 1.13967 1.44427 1.22037 0.93426 0.89390 1.01514 1.21363 0.95026 0.99723 0.97290 1.21347 0.87733 0.99916 1.02181 1.21114 0.90369 0.76349 0.80532 1.90689 1.75140 1.49157 1.32767 1.49135 1.07162 1.53166 1.25556 1.23017 0.99015 0.98093 0.82214 1.22617 0.90588 1.04431 0.97114 1.21479 0.96084 0.96115 0.93784 1.22665 0.94363 0.97109 1.01360 1.20912 0.92999 0.83483 0.96484 1.44884 1.07084 1.04040 1.79420 1.19439 0.89822 0.90301 1.37250 0.89778 1.25670 0.99854 0.97948 1.02858 1.70203 1.19586 1.14208 1.56330 0.85166 0.78045 0.77863 0.78376 1.20557 1.22326 1.19856 1.21689 0.83413 0.94492 0.98146 1.21556 0.80860 0.99623 0.96733 1.21714 0.95734 0.93753 1.03381 1.22099 0.93569 0.99215 0.91770 0.91231 0.90640 0.94819 0.93363 0.90021 0.91647 0.93037 0.86263 0.89256 0.86430 0.87330 0.89210 0.91746 0.89576 0.98299 0.97530 0.94600 0.93947 0.94074 0.94029 0.93660 0.92820 0.88419 0.92966 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.59 127.69 1.22 1.49 16 2 N -0.57 -8.19 4.91 -922.62 -4.53 -12.72 16 3 C 0.06 0.94 5.46 86.33 0.47 1.41 16 4 C -0.10 -1.97 4.68 30.65 0.14 -1.83 16 5 C -0.09 -1.72 1.90 -11.46 -0.02 -1.74 16 6 C 0.53 15.41 7.25 87.66 0.64 16.05 16 7 O -0.60 -23.97 16.33 -3.05 -0.05 -24.02 16 8 N -0.62 -16.75 3.31 -810.07 -2.68 -19.42 16 9 C 0.10 1.63 5.29 86.82 0.46 2.08 16 10 C -0.11 -2.11 6.20 31.44 0.19 -1.92 16 11 C -0.07 -2.30 0.74 -51.84 -0.04 -2.34 16 12 C -0.12 -4.24 5.74 31.37 0.18 -4.06 16 13 C 0.19 9.46 5.34 86.79 0.46 9.93 16 14 N -0.63 -32.33 3.41 -693.32 -2.36 -34.69 16 15 C -0.24 -13.58 10.28 84.03 0.86 -12.72 16 16 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 17 C -0.07 -4.14 5.49 84.86 0.47 -3.67 16 18 N -0.95 -59.51 10.30 21.65 0.22 -59.29 16 19 Si 0.98 47.03 29.55 68.60 2.03 49.06 16 20 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 21 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 22 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 23 C 0.15 5.62 6.12 86.30 0.53 6.14 16 24 C 0.14 4.81 6.27 85.99 0.54 5.35 16 25 C -0.11 -1.62 5.10 30.64 0.16 -1.47 16 26 C 0.06 0.70 5.46 86.33 0.47 1.18 16 27 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 28 H 0.07 0.65 8.09 -2.39 -0.02 0.63 16 29 H 0.03 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.08 1.13 8.12 -2.38 -0.02 1.11 16 32 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.05 1.35 8.04 -2.39 -0.02 1.33 16 34 H 0.12 1.64 7.90 -2.38 -0.02 1.62 16 35 H 0.09 1.31 7.98 -2.39 -0.02 1.29 16 36 H 0.12 1.10 6.56 -2.39 -0.02 1.08 16 37 H 0.11 1.68 7.60 -2.38 -0.02 1.66 16 38 H 0.09 1.54 7.92 -2.39 -0.02 1.52 16 39 H 0.06 2.29 7.72 -2.39 -0.02 2.27 16 40 H 0.09 2.72 8.04 -2.39 -0.02 2.70 16 41 H 0.00 -0.08 7.39 -2.39 -0.02 -0.09 16 42 H 0.01 0.37 7.49 -2.39 -0.02 0.35 16 43 H 0.24 14.94 8.31 -92.70 -0.77 14.17 16 44 H 0.04 1.49 7.74 -2.39 -0.02 1.47 16 45 H 0.04 1.55 7.72 -2.39 -0.02 1.53 16 46 H 0.04 1.75 7.42 -2.39 -0.02 1.73 16 47 H 0.05 1.82 7.51 -2.39 -0.02 1.80 16 48 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.10 1.08 5.39 -2.39 -0.01 1.07 16 50 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 51 H 0.09 0.86 8.09 -2.39 -0.02 0.84 16 Total: -1.00 -78.35 381.78 0.25 -78.09 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: 0.88 Total: 9.10 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: 6.74 Total: 13.89 kcal Atomic # 7 Polarization: -116.78 SS G_CDS: -9.35 Total: -126.13 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.05 Total: -24.02 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -78.35 0.25 -78.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041629696.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.480 kcal (2) G-P(sol) polarization free energy of solvation -78.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds