Wall clock time and date at job start Fri Apr 10 2020 18:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47900 * 111.00243 * 2 1 4 4 C 1.53991 * 107.05650 * 145.84338 * 3 2 1 5 5 C 1.54599 * 105.13912 * 358.77283 * 4 3 2 6 6 H 1.08998 * 110.72063 * 96.58350 * 5 4 3 7 7 C 1.53004 * 110.72368 * 219.68198 * 5 4 3 8 8 C 1.50691 * 109.47187 * 185.00114 * 7 5 4 9 9 O 1.21282 * 120.00176 * 0.02562 * 8 7 5 10 10 N 1.34785 * 120.00026 * 180.02562 * 8 7 5 11 11 C 1.47150 * 125.59553 * 0.02845 * 10 8 7 12 12 C 1.54635 * 107.45889 * 178.97431 * 11 10 8 13 13 C 1.53697 * 102.63796 * 339.49445 * 12 11 10 14 14 C 1.53491 * 111.86071 * 154.27031 * 13 12 11 15 15 C 1.55206 * 101.39588 * 155.57015 * 14 13 12 16 16 N 1.47579 * 105.02603 * 324.67014 * 15 14 13 17 17 C 1.36942 * 125.67518 * 203.85346 * 16 15 14 18 18 H 1.08005 * 119.99573 * 161.51633 * 17 16 15 19 19 C 1.38806 * 120.00029 * 341.51985 * 17 16 15 20 20 N 1.31622 * 119.99998 * 157.54752 * 19 17 16 21 21 Si 1.86799 * 120.00439 * 337.54619 * 19 17 16 22 22 H 1.48504 * 109.47021 * 84.53301 * 21 19 17 23 23 H 1.48496 * 109.47544 * 204.53768 * 21 19 17 24 24 H 1.48506 * 109.46623 * 324.53874 * 21 19 17 25 25 C 1.47441 * 108.64895 * 23.83793 * 16 15 14 26 26 C 1.47745 * 125.59878 * 179.97438 * 10 8 7 27 27 C 1.48531 * 110.99504 * 117.39581 * 2 1 3 28 28 H 1.09005 * 109.46812 * 60.12494 * 1 2 3 29 29 H 1.09001 * 109.47496 * 180.12428 * 1 2 3 30 30 H 1.08995 * 109.47231 * 300.13098 * 1 2 3 31 31 H 1.09001 * 109.91657 * 26.49141 * 3 2 1 32 32 H 1.08997 * 110.07747 * 265.28819 * 3 2 1 33 33 H 1.08997 * 110.30874 * 239.85493 * 4 3 2 34 34 H 1.08997 * 110.30861 * 117.69240 * 4 3 2 35 35 H 1.09003 * 109.46355 * 65.00066 * 7 5 4 36 36 H 1.09004 * 109.47268 * 305.00639 * 7 5 4 37 37 H 1.08998 * 109.87123 * 298.48068 * 11 10 8 38 38 H 1.09000 * 109.87307 * 59.47120 * 11 10 8 39 39 H 1.09004 * 110.75498 * 97.72153 * 12 11 10 40 40 H 1.08998 * 110.75814 * 221.09669 * 12 11 10 41 41 H 1.08995 * 111.03850 * 273.60002 * 14 13 12 42 42 H 1.08994 * 111.03561 * 37.53790 * 14 13 12 43 43 H 1.08997 * 110.33186 * 205.78347 * 15 14 13 44 44 H 1.09006 * 110.33332 * 83.55847 * 15 14 13 45 45 H 0.97003 * 120.00150 * 179.97438 * 20 19 17 46 46 H 1.09003 * 109.99420 * 238.44341 * 25 16 15 47 47 H 1.08997 * 110.00031 * 117.10703 * 25 16 15 48 48 H 1.09007 * 110.40048 * 321.18151 * 26 10 8 49 49 H 1.09002 * 110.39843 * 83.46812 * 26 10 8 50 50 H 1.09002 * 110.66854 * 81.84752 * 27 2 1 51 51 H 1.09000 * 110.67097 * 318.71592 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3807 0.0000 4 6 3.2983 1.3658 0.8266 5 6 3.4491 -0.0931 1.3154 6 1 4.1139 -0.6534 0.6581 7 6 3.9588 -0.1309 2.7576 8 6 4.2121 -1.5598 3.1635 9 8 4.0057 -2.4595 2.3768 10 7 4.6679 -1.8382 4.4010 11 6 4.9585 -0.8476 5.4497 12 6 5.4303 -1.6225 6.7019 13 6 4.8800 -3.0353 6.4503 14 6 5.7034 -4.1073 7.1774 15 6 4.6626 -5.2499 7.3189 16 7 3.3727 -4.5674 7.5391 17 6 2.2778 -5.1094 8.1577 18 1 1.4986 -4.4654 8.5381 19 6 2.1693 -6.4863 8.2958 20 7 1.3983 -6.9949 9.2334 21 14 3.1177 -7.6175 7.1511 22 1 4.4955 -7.8069 7.6719 23 1 2.4322 -8.9326 7.0749 24 1 3.1794 -7.0122 5.7964 25 6 3.4593 -3.2048 6.9825 26 6 4.9569 -3.1880 4.9277 27 6 2.0012 -0.6381 1.2312 28 1 -0.3633 0.5119 -0.8912 29 1 -0.3634 -1.0276 0.0022 30 1 -0.3633 0.5158 0.8888 31 1 1.2759 2.0561 0.4571 32 1 2.2117 1.6999 -1.0203 33 1 3.2137 2.0428 1.6766 34 1 4.1470 1.6453 0.2024 35 1 3.2113 0.3076 3.4186 36 1 4.8862 0.4373 2.8302 37 1 5.7454 -0.1723 5.1136 38 1 4.0578 -0.2799 5.6829 39 1 6.5187 -1.6370 6.7599 40 1 4.9998 -1.1934 7.6067 41 1 6.5532 -4.4247 6.5731 42 1 6.0309 -3.7530 8.1547 43 1 4.9073 -5.8816 8.1728 44 1 4.6257 -5.8439 6.4056 45 1 1.3222 -7.9572 9.3298 46 1 3.2639 -2.4701 7.7636 47 1 2.7408 -3.0871 6.1714 48 1 4.2088 -3.9001 4.5791 49 1 5.9543 -3.5080 4.6262 50 1 2.0040 -1.7235 1.1316 51 1 1.4236 -0.3323 2.1035 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041785686.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:51 Heat of formation + Delta-G solvation = 0.631314 kcal Electronic energy + Delta-G solvation = -28326.851646 eV Core-core repulsion = 24647.629096 eV Total energy + Delta-G solvation = -3679.222550 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.54643 -39.41849 -38.22174 -35.90788 -33.60991 -32.73969 -31.13078 -30.16424 -29.63608 -28.52977 -27.59863 -26.09701 -24.98572 -23.77895 -22.41474 -21.32060 -20.94789 -20.55437 -19.25503 -18.94010 -17.21354 -16.74887 -16.34966 -15.96886 -15.63093 -15.32692 -15.06015 -14.78820 -14.62960 -14.09231 -13.77407 -13.67528 -13.58256 -13.26200 -13.04317 -12.87549 -12.42767 -12.37640 -12.32155 -12.13102 -11.90117 -11.70847 -11.64137 -11.56081 -11.55819 -11.46136 -11.05570 -11.01626 -10.90622 -10.74906 -10.52846 -10.31672 -10.04080 -9.95349 -9.71946 -9.41780 -8.68141 -8.65160 -8.59698 -7.03847 -5.93776 -3.23901 2.65885 2.95455 3.35793 3.50946 3.54048 3.81003 4.23631 4.38934 4.46432 4.52038 4.56481 4.64186 4.76523 4.84997 4.90238 4.97162 5.10114 5.15149 5.18255 5.19622 5.23654 5.29748 5.34085 5.37873 5.45151 5.47816 5.49897 5.57235 5.60780 5.66340 5.74884 5.77741 5.81289 5.89506 5.92025 6.01926 6.06649 6.11347 6.15791 6.25849 6.33893 6.52936 6.60813 6.65247 6.66129 6.75497 6.80304 7.54223 7.70604 8.19346 8.31623 8.83605 9.69769 10.18340 11.22410 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.015691 B = 0.003167 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.074765 B = 8838.820015 C = 9799.581804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.524 5.524 3 C 0.035 3.965 4 C -0.128 4.128 5 C -0.075 4.075 6 H 0.093 0.907 7 C -0.127 4.127 8 C 0.525 3.475 9 O -0.536 6.536 10 N -0.618 5.618 11 C 0.102 3.898 12 C -0.116 4.116 13 C -0.085 4.085 14 C -0.115 4.115 15 C 0.109 3.891 16 N -0.609 5.609 17 C -0.241 4.241 18 H 0.091 0.909 19 C 0.022 3.978 20 N -0.909 5.909 21 Si 0.882 3.118 22 H -0.285 1.285 23 H -0.302 1.302 24 H -0.276 1.276 25 C 0.153 3.847 26 C 0.123 3.877 27 C 0.041 3.959 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.027 0.973 31 H 0.043 0.957 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.060 0.940 44 H 0.025 0.975 45 H 0.263 0.737 46 H 0.036 0.964 47 H 0.030 0.970 48 H 0.082 0.918 49 H 0.066 0.934 50 H 0.094 0.906 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.068 19.988 -13.193 25.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.248 5.248 3 C -0.093 4.093 4 C -0.166 4.166 5 C -0.094 4.094 6 H 0.111 0.889 7 C -0.168 4.168 8 C 0.314 3.686 9 O -0.413 6.413 10 N -0.352 5.352 11 C -0.021 4.021 12 C -0.154 4.154 13 C -0.086 4.086 14 C -0.154 4.154 15 C -0.016 4.016 16 N -0.336 5.336 17 C -0.368 4.368 18 H 0.109 0.891 19 C -0.176 4.176 20 N -0.553 5.553 21 Si 0.712 3.288 22 H -0.212 1.212 23 H -0.230 1.230 24 H -0.202 1.202 25 C 0.028 3.972 26 C 0.002 3.998 27 C -0.086 4.086 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.046 0.954 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.106 0.894 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.078 0.922 44 H 0.043 0.957 45 H 0.073 0.927 46 H 0.054 0.946 47 H 0.048 0.952 48 H 0.101 0.899 49 H 0.084 0.916 50 H 0.112 0.888 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 7.894 19.075 -14.059 24.976 hybrid contribution 0.067 -0.282 0.194 0.349 sum 7.961 18.793 -13.865 24.673 Atomic orbital electron populations 1.22514 0.87852 1.02433 1.00502 1.64730 1.08121 1.14549 1.37398 1.22863 0.95750 0.90224 1.00509 1.22492 0.97888 0.96605 0.99628 1.21824 0.97235 0.95669 0.94696 0.88887 1.21703 1.03259 0.94103 0.97693 1.20295 0.76608 0.91471 0.80249 1.90722 1.51659 1.48392 1.50512 1.48669 1.65485 1.08640 1.12446 1.22114 1.00265 0.91663 0.88105 1.22527 1.01167 0.94557 0.97133 1.21634 0.98043 0.95025 0.93938 1.22519 0.97073 0.95755 1.00056 1.22045 0.85992 0.94473 0.99048 1.44928 1.09876 1.10858 1.67932 1.18622 0.98413 0.90755 1.29027 0.89121 1.24982 0.97868 0.96391 0.98384 1.69843 1.42186 1.12083 1.31209 0.87001 0.78865 0.80079 0.82875 1.21182 1.23026 1.20187 1.21101 0.91879 0.88645 0.95585 1.22063 1.01204 0.84363 0.92217 1.23353 0.93738 1.01154 0.90370 0.91453 0.91080 0.95437 0.93881 0.90459 0.91269 0.90773 0.88986 0.88760 0.91579 0.91347 0.90376 0.89413 0.91271 0.90489 0.92224 0.95715 0.92719 0.94577 0.95189 0.89921 0.91565 0.88773 0.93971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.40 60.07 0.56 0.71 16 2 N -0.52 -5.73 5.55 -238.72 -1.33 -7.06 16 3 C 0.03 0.30 6.70 -2.76 -0.02 0.28 16 4 C -0.13 -0.98 6.51 -25.37 -0.17 -1.15 16 5 C -0.07 -0.76 2.62 -88.76 -0.23 -0.99 16 6 H 0.09 1.10 7.88 -51.93 -0.41 0.69 16 7 C -0.13 -1.19 4.27 -27.89 -0.12 -1.31 16 8 C 0.53 7.18 7.68 -10.99 -0.08 7.09 16 9 O -0.54 -9.48 15.13 5.56 0.08 -9.39 16 10 N -0.62 -8.08 3.34 -171.01 -0.57 -8.65 16 11 C 0.10 0.98 6.47 -2.83 -0.02 0.96 16 12 C -0.12 -1.22 5.98 -25.51 -0.15 -1.37 16 13 C -0.09 -1.27 0.61 -153.96 -0.09 -1.36 16 14 C -0.12 -1.80 6.06 -25.31 -0.15 -1.95 16 15 C 0.11 2.34 4.68 -2.28 -0.01 2.33 16 16 N -0.61 -14.67 3.22 -170.44 -0.55 -15.21 16 17 C -0.24 -6.89 10.58 -15.06 -0.16 -7.05 16 18 H 0.09 2.74 8.06 -52.48 -0.42 2.32 16 19 C 0.02 0.65 5.43 -17.43 -0.09 0.56 16 20 N -0.91 -28.33 13.97 55.49 0.78 -27.55 16 21 Si 0.88 23.03 24.27 -169.99 -4.13 18.91 16 22 H -0.28 -7.07 6.49 56.52 0.37 -6.71 16 23 H -0.30 -8.01 7.11 56.52 0.40 -7.61 16 24 H -0.28 -7.24 6.66 56.52 0.38 -6.86 16 25 C 0.15 2.95 6.45 -3.70 -0.02 2.93 16 26 C 0.12 1.88 5.74 -3.25 -0.02 1.86 16 27 C 0.04 0.49 5.46 -1.90 -0.01 0.48 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.03 0.24 8.00 -51.93 -0.42 -0.17 16 31 H 0.04 0.34 7.73 -51.93 -0.40 -0.06 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.44 7.85 -51.93 -0.41 0.03 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.09 0.76 7.99 -51.93 -0.42 0.34 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.70 8.06 -51.93 -0.42 0.28 16 40 H 0.09 0.88 7.64 -51.93 -0.40 0.49 16 41 H 0.07 0.92 7.77 -51.93 -0.40 0.52 16 42 H 0.08 1.12 8.08 -51.93 -0.42 0.70 16 43 H 0.06 1.36 6.66 -51.93 -0.35 1.02 16 44 H 0.03 0.57 5.56 -51.93 -0.29 0.28 16 45 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 46 H 0.04 0.67 7.56 -51.93 -0.39 0.28 16 47 H 0.03 0.62 7.80 -51.93 -0.41 0.22 16 48 H 0.08 1.55 7.90 -51.92 -0.41 1.14 16 49 H 0.07 0.94 7.80 -51.93 -0.41 0.53 16 50 H 0.09 1.36 7.41 -51.93 -0.38 0.97 16 51 H 0.04 0.49 7.76 -51.93 -0.40 0.08 16 LS Contribution 383.19 15.07 5.77 5.77 Total: -1.00 -34.09 383.19 -10.03 -44.11 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -9.30 Total: -2.94 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -0.79 Total: 2.01 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: -1.67 Total: -58.48 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.08 Total: -9.39 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -4.13 Total: 18.91 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.09 -10.03 -44.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041785686.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.745 kcal (2) G-P(sol) polarization free energy of solvation -34.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds