Wall clock time and date at job start Fri Apr 10 2020 18:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47900 * 111.00243 * 2 1 4 4 C 1.53991 * 107.05650 * 145.84338 * 3 2 1 5 5 C 1.54599 * 105.13912 * 358.77283 * 4 3 2 6 6 H 1.08998 * 110.72063 * 96.58350 * 5 4 3 7 7 C 1.53004 * 110.72368 * 219.68198 * 5 4 3 8 8 C 1.50691 * 109.47187 * 185.00114 * 7 5 4 9 9 O 1.21282 * 120.00176 * 0.02562 * 8 7 5 10 10 N 1.34785 * 120.00026 * 180.02562 * 8 7 5 11 11 C 1.47150 * 125.59553 * 0.02845 * 10 8 7 12 12 C 1.54635 * 107.45889 * 178.97431 * 11 10 8 13 13 C 1.53697 * 102.63796 * 339.49445 * 12 11 10 14 14 C 1.53491 * 111.86071 * 154.27031 * 13 12 11 15 15 C 1.55206 * 101.39588 * 155.57015 * 14 13 12 16 16 N 1.47579 * 105.02603 * 324.67014 * 15 14 13 17 17 C 1.36942 * 125.67518 * 203.85346 * 16 15 14 18 18 H 1.08005 * 119.99573 * 161.51633 * 17 16 15 19 19 C 1.38806 * 120.00029 * 341.51985 * 17 16 15 20 20 N 1.31622 * 119.99998 * 157.54752 * 19 17 16 21 21 Si 1.86799 * 120.00439 * 337.54619 * 19 17 16 22 22 H 1.48504 * 109.47021 * 84.53301 * 21 19 17 23 23 H 1.48496 * 109.47544 * 204.53768 * 21 19 17 24 24 H 1.48506 * 109.46623 * 324.53874 * 21 19 17 25 25 C 1.47441 * 108.64895 * 23.83793 * 16 15 14 26 26 C 1.47745 * 125.59878 * 179.97438 * 10 8 7 27 27 C 1.48531 * 110.99504 * 117.39581 * 2 1 3 28 28 H 1.09005 * 109.46812 * 60.12494 * 1 2 3 29 29 H 1.09001 * 109.47496 * 180.12428 * 1 2 3 30 30 H 1.08995 * 109.47231 * 300.13098 * 1 2 3 31 31 H 1.09001 * 109.91657 * 26.49141 * 3 2 1 32 32 H 1.08997 * 110.07747 * 265.28819 * 3 2 1 33 33 H 1.08997 * 110.30874 * 239.85493 * 4 3 2 34 34 H 1.08997 * 110.30861 * 117.69240 * 4 3 2 35 35 H 1.09003 * 109.46355 * 65.00066 * 7 5 4 36 36 H 1.09004 * 109.47268 * 305.00639 * 7 5 4 37 37 H 1.08998 * 109.87123 * 298.48068 * 11 10 8 38 38 H 1.09000 * 109.87307 * 59.47120 * 11 10 8 39 39 H 1.09004 * 110.75498 * 97.72153 * 12 11 10 40 40 H 1.08998 * 110.75814 * 221.09669 * 12 11 10 41 41 H 1.08995 * 111.03850 * 273.60002 * 14 13 12 42 42 H 1.08994 * 111.03561 * 37.53790 * 14 13 12 43 43 H 1.08997 * 110.33186 * 205.78347 * 15 14 13 44 44 H 1.09006 * 110.33332 * 83.55847 * 15 14 13 45 45 H 0.97003 * 120.00150 * 179.97438 * 20 19 17 46 46 H 1.09003 * 109.99420 * 238.44341 * 25 16 15 47 47 H 1.08997 * 110.00031 * 117.10703 * 25 16 15 48 48 H 1.09007 * 110.40048 * 321.18151 * 26 10 8 49 49 H 1.09002 * 110.39843 * 83.46812 * 26 10 8 50 50 H 1.09002 * 110.66854 * 81.84752 * 27 2 1 51 51 H 1.09000 * 110.67097 * 318.71592 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9991 1.3807 0.0000 4 6 3.2983 1.3658 0.8266 5 6 3.4491 -0.0931 1.3154 6 1 4.1139 -0.6534 0.6581 7 6 3.9588 -0.1309 2.7576 8 6 4.2121 -1.5598 3.1635 9 8 4.0057 -2.4595 2.3768 10 7 4.6679 -1.8382 4.4010 11 6 4.9585 -0.8476 5.4497 12 6 5.4303 -1.6225 6.7019 13 6 4.8800 -3.0353 6.4503 14 6 5.7034 -4.1073 7.1774 15 6 4.6626 -5.2499 7.3189 16 7 3.3727 -4.5674 7.5391 17 6 2.2778 -5.1094 8.1577 18 1 1.4986 -4.4654 8.5381 19 6 2.1693 -6.4863 8.2958 20 7 1.3983 -6.9949 9.2334 21 14 3.1177 -7.6175 7.1511 22 1 4.4955 -7.8069 7.6719 23 1 2.4322 -8.9326 7.0749 24 1 3.1794 -7.0122 5.7964 25 6 3.4593 -3.2048 6.9825 26 6 4.9569 -3.1880 4.9277 27 6 2.0012 -0.6381 1.2312 28 1 -0.3633 0.5119 -0.8912 29 1 -0.3634 -1.0276 0.0022 30 1 -0.3633 0.5158 0.8888 31 1 1.2759 2.0561 0.4571 32 1 2.2117 1.6999 -1.0203 33 1 3.2137 2.0428 1.6766 34 1 4.1470 1.6453 0.2024 35 1 3.2113 0.3076 3.4186 36 1 4.8862 0.4373 2.8302 37 1 5.7454 -0.1723 5.1136 38 1 4.0578 -0.2799 5.6829 39 1 6.5187 -1.6370 6.7599 40 1 4.9998 -1.1934 7.6067 41 1 6.5532 -4.4247 6.5731 42 1 6.0309 -3.7530 8.1547 43 1 4.9073 -5.8816 8.1728 44 1 4.6257 -5.8439 6.4056 45 1 1.3222 -7.9572 9.3298 46 1 3.2639 -2.4701 7.7636 47 1 2.7408 -3.0871 6.1714 48 1 4.2088 -3.9001 4.5791 49 1 5.9543 -3.5080 4.6262 50 1 2.0040 -1.7235 1.1316 51 1 1.4236 -0.3323 2.1035 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041785686.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:50 Heat of formation + Delta-G solvation = -24.402669 kcal Electronic energy + Delta-G solvation = -28327.937201 eV Core-core repulsion = 24647.629096 eV Total energy + Delta-G solvation = -3680.308105 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.62855 -40.40167 -39.29688 -37.30779 -34.67822 -34.33942 -32.72000 -31.00063 -30.89271 -29.74983 -28.65561 -27.47882 -26.10875 -24.99563 -23.53035 -22.76859 -22.11689 -21.30503 -20.37321 -20.04797 -18.89288 -18.01581 -17.35623 -17.20461 -16.88156 -16.52772 -16.40118 -15.81481 -15.59547 -15.42976 -15.10166 -14.86246 -14.72562 -14.48459 -14.06907 -14.03704 -13.79682 -13.69773 -13.35236 -13.20547 -13.09810 -13.04876 -12.95600 -12.79786 -12.44883 -12.34114 -12.28926 -12.27204 -12.17431 -11.81710 -11.78232 -11.57676 -11.49880 -11.43929 -11.29904 -10.84459 -10.80491 -9.62356 -9.43873 -9.09125 -8.23372 -5.48483 1.22578 1.33661 1.41408 1.65526 1.99891 2.35185 3.00148 3.04591 3.25065 3.36556 3.52771 3.61645 3.67220 3.71654 3.90393 3.96214 4.01625 4.22221 4.24942 4.36716 4.37269 4.38831 4.43308 4.49572 4.50903 4.57965 4.62039 4.69943 4.73912 4.77366 4.79652 4.83387 4.87408 4.91037 4.96536 4.98211 5.01071 5.02993 5.07926 5.16667 5.22979 5.26155 5.34674 5.35367 5.37098 5.63078 5.88748 6.05192 6.05275 6.57735 6.72138 7.18852 7.49545 8.06674 8.96783 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.015691 B = 0.003167 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.074765 B = 8838.820015 C = 9799.581804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.545 5.545 3 C 0.031 3.969 4 C -0.118 4.118 5 C -0.073 4.073 6 H 0.069 0.931 7 C -0.114 4.114 8 C 0.514 3.486 9 O -0.590 6.590 10 N -0.620 5.620 11 C 0.097 3.903 12 C -0.105 4.105 13 C -0.077 4.077 14 C -0.099 4.099 15 C 0.098 3.902 16 N -0.629 5.629 17 C -0.233 4.233 18 H 0.060 0.940 19 C -0.034 4.034 20 N -0.954 5.954 21 Si 0.942 3.058 22 H -0.262 1.262 23 H -0.307 1.307 24 H -0.284 1.284 25 C 0.152 3.848 26 C 0.125 3.875 27 C 0.042 3.958 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.032 0.968 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.111 0.889 36 H 0.132 0.868 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.109 0.891 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.043 0.957 44 H 0.011 0.989 45 H 0.263 0.737 46 H 0.046 0.954 47 H 0.006 0.994 48 H 0.032 0.968 49 H 0.082 0.918 50 H 0.053 0.947 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.273 23.692 -13.580 29.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.269 5.269 3 C -0.097 4.097 4 C -0.155 4.155 5 C -0.093 4.093 6 H 0.087 0.913 7 C -0.154 4.154 8 C 0.305 3.695 9 O -0.471 6.471 10 N -0.353 5.353 11 C -0.024 4.024 12 C -0.142 4.142 13 C -0.078 4.078 14 C -0.137 4.137 15 C -0.027 4.027 16 N -0.356 5.356 17 C -0.362 4.362 18 H 0.078 0.922 19 C -0.229 4.229 20 N -0.602 5.602 21 Si 0.771 3.229 22 H -0.187 1.187 23 H -0.236 1.236 24 H -0.211 1.211 25 C 0.027 3.973 26 C 0.002 3.998 27 C -0.086 4.086 28 H 0.100 0.900 29 H 0.077 0.923 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.129 0.871 36 H 0.150 0.850 37 H 0.125 0.875 38 H 0.098 0.902 39 H 0.127 0.873 40 H 0.116 0.884 41 H 0.120 0.880 42 H 0.115 0.885 43 H 0.061 0.939 44 H 0.029 0.971 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.024 0.976 48 H 0.050 0.950 49 H 0.100 0.900 50 H 0.071 0.929 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 11.143 22.836 -14.439 29.226 hybrid contribution -1.027 -1.399 0.295 1.760 sum 10.116 21.438 -14.144 27.604 Atomic orbital electron populations 1.22531 0.87320 1.01997 1.01461 1.64684 1.08912 1.16395 1.36945 1.22970 0.96486 0.88803 1.01397 1.22480 0.97796 0.94800 1.00459 1.21761 0.95238 0.97111 0.95169 0.91278 1.21732 1.05448 0.91207 0.97012 1.21188 0.75542 0.92888 0.79863 1.90706 1.53855 1.50347 1.52193 1.48808 1.64983 1.08485 1.13033 1.22420 1.02242 0.91130 0.86620 1.22572 1.02914 0.90720 0.98022 1.21514 0.94888 0.98207 0.93232 1.22510 0.96165 0.93128 1.01912 1.22174 0.86579 0.96502 0.97424 1.45111 1.09843 1.12785 1.67870 1.18609 0.99027 0.90591 1.27957 0.92181 1.25558 0.99732 0.97839 0.99725 1.69951 1.44865 1.12272 1.33070 0.86018 0.78792 0.77702 0.80369 1.18744 1.23565 1.21086 1.21260 0.94786 0.86279 0.94951 1.21898 1.00379 0.85015 0.92557 1.23216 0.95547 0.99003 0.90861 0.89950 0.92322 0.94909 0.92783 0.89782 0.88904 0.89341 0.87122 0.85050 0.87545 0.90196 0.87289 0.88359 0.88041 0.88484 0.93920 0.97114 0.92818 0.93563 0.97575 0.94960 0.89955 0.92852 0.93995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.40 127.69 1.20 1.49 16 2 N -0.55 -11.78 5.55 -909.17 -5.05 -16.83 16 3 C 0.03 0.46 6.70 86.45 0.58 1.04 16 4 C -0.12 -1.41 6.51 31.47 0.20 -1.21 16 5 C -0.07 -1.38 2.62 -9.59 -0.03 -1.41 16 6 H 0.07 1.64 7.88 -2.39 -0.02 1.62 16 7 C -0.11 -1.78 4.27 29.85 0.13 -1.66 16 8 C 0.51 13.52 7.68 87.65 0.67 14.19 16 9 O -0.59 -21.76 15.13 -3.03 -0.05 -21.80 16 10 N -0.62 -14.77 3.34 -813.34 -2.72 -17.49 16 11 C 0.10 1.38 6.47 86.81 0.56 1.94 16 12 C -0.10 -1.66 5.98 31.39 0.19 -1.47 16 13 C -0.08 -2.10 0.61 -51.83 -0.03 -2.13 16 14 C -0.10 -2.76 6.06 31.52 0.19 -2.57 16 15 C 0.10 4.12 4.68 86.93 0.41 4.53 16 16 N -0.63 -30.77 3.22 -693.15 -2.23 -33.00 16 17 C -0.23 -13.84 10.58 84.03 0.89 -12.95 16 18 H 0.06 3.84 8.06 -2.91 -0.02 3.82 16 19 C -0.03 -2.07 5.43 84.86 0.46 -1.61 16 20 N -0.95 -61.74 13.97 21.65 0.30 -61.44 16 21 Si 0.94 49.36 24.27 68.60 1.66 51.02 16 22 H -0.26 -12.61 6.49 99.48 0.65 -11.96 16 23 H -0.31 -16.20 7.11 99.48 0.71 -15.49 16 24 H -0.28 -15.09 6.66 99.48 0.66 -14.43 16 25 C 0.15 5.79 6.45 86.09 0.56 6.35 16 26 C 0.12 3.64 5.74 86.21 0.50 4.14 16 27 C 0.04 1.01 5.46 86.65 0.47 1.48 16 28 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.03 0.56 8.00 -2.39 -0.02 0.54 16 31 H 0.05 0.69 7.73 -2.39 -0.02 0.67 16 32 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.09 0.72 7.85 -2.39 -0.02 0.70 16 34 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.11 1.38 7.99 -2.39 -0.02 1.36 16 36 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.11 1.18 8.06 -2.38 -0.02 1.16 16 40 H 0.10 1.44 7.64 -2.39 -0.02 1.42 16 41 H 0.10 2.25 7.77 -2.39 -0.02 2.23 16 42 H 0.10 2.38 8.08 -2.39 -0.02 2.36 16 43 H 0.04 1.93 6.66 -2.39 -0.02 1.91 16 44 H 0.01 0.50 5.56 -2.38 -0.01 0.49 16 45 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 46 H 0.05 1.67 7.56 -2.39 -0.02 1.65 16 47 H 0.01 0.26 7.80 -2.39 -0.02 0.24 16 48 H 0.03 1.26 7.90 -2.38 -0.02 1.24 16 49 H 0.08 2.13 7.80 -2.39 -0.02 2.12 16 50 H 0.05 1.70 7.41 -2.39 -0.02 1.68 16 51 H 0.04 0.98 7.76 -2.39 -0.02 0.96 16 Total: -1.00 -82.18 383.19 -0.35 -82.53 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: 0.78 Total: 6.86 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: 6.95 Total: 10.16 kcal Atomic # 7 Polarization: -119.07 SS G_CDS: -9.70 Total: -128.76 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.05 Total: -21.80 kcal Atomic # 14 Polarization: 49.36 SS G_CDS: 1.66 Total: 51.02 kcal Total: -82.18 -0.35 -82.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041785686.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.127 kcal (2) G-P(sol) polarization free energy of solvation -82.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds