Wall clock time and date at job start Fri Apr 10 2020 18:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 111.00248 * 2 1 4 4 C 1.46903 * 111.00186 * 123.95786 * 2 1 3 5 5 C 1.50696 * 112.84937 * 65.24029 * 4 2 1 6 6 O 1.21281 * 120.00473 * 220.00070 * 5 4 2 7 7 N 1.34777 * 120.00151 * 40.00675 * 5 4 2 8 8 C 1.46602 * 119.75334 * 4.48849 * 7 5 4 9 9 C 1.54309 * 110.48412 * 132.17342 * 8 7 5 10 10 C 1.51975 * 107.20690 * 52.07616 * 9 8 7 11 11 H 1.09005 * 111.57490 * 56.72353 * 10 9 8 12 12 C 1.53310 * 114.31248 * 184.55295 * 10 9 8 13 13 C 1.55300 * 101.30326 * 154.30382 * 12 10 9 14 14 N 1.48152 * 107.04365 * 336.97250 * 13 12 10 15 15 C 1.36943 * 126.39878 * 175.02184 * 14 13 12 16 16 H 1.07993 * 120.00194 * 179.97438 * 15 14 13 17 17 C 1.38817 * 119.99606 * 359.97110 * 15 14 13 18 18 N 1.31614 * 120.00337 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99572 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46671 * 60.00785 * 19 17 15 21 21 H 1.48502 * 109.46678 * 180.02562 * 19 17 15 22 22 H 1.48491 * 109.47132 * 300.00450 * 19 17 15 23 23 C 1.45505 * 107.20489 * 354.99774 * 14 13 12 24 24 H 1.08998 * 109.56334 * 274.15946 * 23 14 13 25 25 C 1.47798 * 119.76074 * 184.75932 * 7 5 4 26 26 C 1.53781 * 113.61356 * 294.05006 * 4 2 1 27 27 C 1.53955 * 87.02069 * 220.04742 * 26 4 2 28 28 C 1.53780 * 113.61551 * 196.44341 * 4 2 1 29 29 H 1.09004 * 109.47010 * 55.07830 * 1 2 3 30 30 H 1.09004 * 109.46804 * 295.08634 * 1 2 3 31 31 H 1.08998 * 109.47417 * 175.08329 * 1 2 3 32 32 H 1.08999 * 109.47016 * 67.69807 * 3 2 1 33 33 H 1.09005 * 109.47132 * 187.69041 * 3 2 1 34 34 H 1.08993 * 109.47191 * 307.69439 * 3 2 1 35 35 H 1.08998 * 109.22660 * 252.57701 * 8 7 5 36 36 H 1.09002 * 109.22975 * 11.93564 * 8 7 5 37 37 H 1.09003 * 110.04774 * 292.59033 * 9 8 7 38 38 H 1.09002 * 109.80960 * 171.43097 * 9 8 7 39 39 H 1.08998 * 111.70487 * 36.12798 * 12 10 9 40 40 H 1.09002 * 110.73088 * 272.05623 * 12 10 9 41 41 H 1.09006 * 109.91774 * 217.62357 * 13 12 10 42 42 H 1.09001 * 110.08921 * 96.41820 * 13 12 10 43 43 H 0.97000 * 119.99916 * 179.97438 * 18 17 15 44 44 H 1.08996 * 110.06143 * 350.47797 * 25 7 5 45 45 H 1.09000 * 110.06396 * 112.03903 * 25 7 5 46 46 H 1.09004 * 113.60830 * 334.56599 * 26 4 2 47 47 H 1.08999 * 113.61517 * 105.46503 * 26 4 2 48 48 H 1.08998 * 113.53754 * 270.81238 * 27 26 4 49 49 H 1.08995 * 113.74437 * 139.94091 * 27 26 4 50 50 H 1.09003 * 113.61141 * 254.52314 * 28 4 2 51 51 H 1.09001 * 113.61354 * 25.34403 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7661 1.1375 5 6 1.6622 -2.2336 1.0592 6 8 1.3436 -2.8376 2.0615 7 7 1.7183 -2.8751 -0.1248 8 6 2.1986 -2.1659 -1.3146 9 6 3.2414 -3.0186 -2.0673 10 6 2.6216 -4.3870 -2.2973 11 1 1.6789 -4.3141 -2.8397 12 6 3.5667 -5.4077 -2.9419 13 6 2.9595 -6.7453 -2.4382 14 7 2.1950 -6.4387 -1.2067 15 6 1.4220 -7.3137 -0.4910 16 1 0.9072 -6.9778 0.3969 17 6 1.3002 -8.6325 -0.9071 18 7 1.9280 -9.0419 -1.9889 19 14 0.2463 -9.8262 0.0696 20 1 -1.1535 -9.3320 0.1098 21 1 0.2817 -11.1620 -0.5784 22 1 0.7734 -9.9338 1.4536 23 6 2.4195 -5.0343 -0.8993 24 1 3.3330 -4.9303 -0.3139 25 6 1.2895 -4.2866 -0.2155 26 6 1.6801 -0.1350 2.5040 27 6 3.1058 -0.5336 2.9270 28 6 3.4779 -0.4859 1.4356 29 1 -0.3633 0.5883 -0.8427 30 1 -0.3633 0.4357 0.9308 31 1 -0.3634 -1.0238 -0.0881 32 1 1.7616 1.8504 0.9508 33 1 3.0765 1.3456 -0.1375 34 1 1.5391 1.9358 -0.8131 35 1 1.3556 -1.9590 -1.9739 36 1 2.6554 -1.2239 -1.0110 37 1 4.1464 -3.1172 -1.4678 38 1 3.4780 -2.5530 -3.0241 39 1 4.5911 -5.2873 -2.5895 40 1 3.5204 -5.3434 -4.0291 41 1 3.7569 -7.4538 -2.2136 42 1 2.2942 -7.1627 -3.1940 43 1 1.8431 -9.9636 -2.2794 44 1 1.1231 -4.6917 0.7826 45 1 0.3779 -4.3632 -0.8081 46 1 1.5227 0.9428 2.4612 47 1 0.8981 -0.6565 3.0558 48 1 3.1681 -1.5315 3.3609 49 1 3.6126 0.2216 3.5277 50 1 4.1450 -1.2905 1.1262 51 1 3.8131 0.4951 1.0989 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042093156.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:05 Heat of formation + Delta-G solvation = 46.406576 kcal Electronic energy + Delta-G solvation = -29871.399934 eV Core-core repulsion = 26194.162349 eV Total energy + Delta-G solvation = -3677.237586 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.28705 -39.13042 -37.53481 -35.57502 -34.64423 -32.80105 -31.13079 -29.60801 -28.41820 -28.07597 -26.61660 -25.69153 -24.59447 -23.75831 -22.54479 -22.02421 -20.85380 -19.98519 -19.39406 -18.00673 -17.20879 -16.52571 -16.08954 -15.88005 -15.13881 -14.89567 -14.71001 -14.57165 -14.26530 -14.13012 -13.83902 -13.40858 -13.17511 -13.09052 -12.85035 -12.52598 -12.42999 -12.22825 -12.04406 -11.93769 -11.80187 -11.67809 -11.41131 -11.21307 -11.09721 -10.97654 -10.83076 -10.72615 -10.62933 -10.57081 -10.13087 -9.92156 -9.72814 -9.63241 -9.52681 -9.37572 -8.57561 -8.40377 -8.24682 -6.79842 -5.66845 -3.00199 2.71709 3.21464 3.45583 3.49517 3.51263 3.57361 4.31793 4.44992 4.47642 4.56322 4.67813 4.88412 5.00685 5.11310 5.20724 5.21851 5.27884 5.30468 5.35528 5.43176 5.50015 5.54560 5.67675 5.70397 5.74308 5.76518 5.81691 5.84262 5.87246 5.89127 5.95247 6.03711 6.16777 6.19151 6.24773 6.26810 6.33450 6.45233 6.59461 6.62761 6.66427 6.70902 6.82180 6.90622 7.15613 7.60576 7.65210 7.75133 7.86119 8.28602 8.43087 9.24336 9.87448 10.54770 11.45416 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.018165 B = 0.003930 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.038727 B = 7122.450518 C = 7893.378988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.522 5.522 3 C 0.015 3.985 4 C 0.067 3.933 5 C 0.540 3.460 6 O -0.542 6.542 7 N -0.591 5.591 8 C 0.112 3.888 9 C -0.124 4.124 10 C -0.110 4.110 11 H 0.076 0.924 12 C -0.139 4.139 13 C 0.177 3.823 14 N -0.593 5.593 15 C -0.227 4.227 16 H 0.078 0.922 17 C -0.006 4.006 18 N -0.922 5.922 19 Si 0.909 3.091 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.285 1.285 23 C 0.157 3.843 24 H 0.023 0.977 25 C 0.115 3.885 26 C -0.153 4.153 27 C -0.135 4.135 28 C -0.128 4.128 29 H 0.072 0.928 30 H 0.030 0.970 31 H 0.069 0.931 32 H 0.032 0.968 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.109 0.891 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.036 0.964 42 H 0.055 0.945 43 H 0.252 0.748 44 H 0.089 0.911 45 H 0.069 0.931 46 H 0.086 0.914 47 H 0.080 0.920 48 H 0.090 0.910 49 H 0.070 0.930 50 H 0.076 0.924 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.353 23.031 1.193 23.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.246 5.246 3 C -0.133 4.133 4 C -0.026 4.026 5 C 0.326 3.674 6 O -0.419 6.419 7 N -0.322 5.322 8 C -0.011 4.011 9 C -0.162 4.162 10 C -0.130 4.130 11 H 0.095 0.905 12 C -0.177 4.177 13 C 0.053 3.947 14 N -0.318 5.318 15 C -0.355 4.355 16 H 0.096 0.904 17 C -0.202 4.202 18 N -0.570 5.570 19 Si 0.740 3.260 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 C 0.048 3.952 24 H 0.040 0.960 25 C -0.007 4.007 26 C -0.192 4.192 27 C -0.173 4.173 28 C -0.166 4.166 29 H 0.090 0.910 30 H 0.049 0.951 31 H 0.088 0.912 32 H 0.051 0.949 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.127 0.873 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.107 0.893 45 H 0.087 0.913 46 H 0.104 0.896 47 H 0.099 0.901 48 H 0.108 0.892 49 H 0.089 0.911 50 H 0.095 0.905 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.256 22.186 1.246 22.335 hybrid contribution -0.863 -0.379 1.040 1.404 sum 1.393 21.807 2.286 21.970 Atomic orbital electron populations 1.22395 0.86763 1.02872 1.00656 1.62289 1.08442 1.13487 1.40373 1.22571 1.01318 0.88607 1.00802 1.22600 0.97938 0.92160 0.89870 1.19586 0.77396 0.87195 0.83229 1.90696 1.48617 1.67595 1.34982 1.48173 1.62992 1.12616 1.08463 1.22094 0.97151 0.95558 0.86266 1.21967 0.98297 0.96142 0.99823 1.22213 0.99113 0.93319 0.98383 0.90524 1.22657 0.97962 0.98037 0.99084 1.21539 0.94322 0.90614 0.88251 1.44190 1.55807 1.03502 1.28318 1.19000 1.21171 0.89912 1.05439 0.90417 1.24767 1.00434 0.97111 0.97935 1.69935 1.46217 1.16224 1.24600 0.86235 0.80156 0.80408 0.79226 1.21151 1.21641 1.21157 1.20979 0.94924 0.86021 0.93234 0.95952 1.21719 0.97764 0.78517 1.02731 1.23369 0.99131 1.00397 0.96306 1.22766 0.95869 1.02777 0.95856 1.23224 0.93555 1.03123 0.96720 0.90951 0.95126 0.91188 0.94917 0.90653 0.91001 0.92296 0.87347 0.91877 0.91247 0.92548 0.92371 0.94625 0.92651 0.93774 0.89299 0.91316 0.89612 0.90110 0.89177 0.91117 0.90519 0.88391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.25 60.06 0.56 0.76 16 2 N -0.52 -5.00 2.06 -235.80 -0.49 -5.48 16 3 C 0.01 0.10 8.62 60.06 0.52 0.62 16 4 C 0.07 0.78 0.25 -131.94 -0.03 0.75 16 5 C 0.54 8.66 5.82 -10.99 -0.06 8.60 16 6 O -0.54 -10.71 14.83 5.56 0.08 -10.63 16 7 N -0.59 -9.46 3.00 -172.48 -0.52 -9.98 16 8 C 0.11 1.46 5.34 -3.30 -0.02 1.44 16 9 C -0.12 -1.69 5.70 -26.57 -0.15 -1.84 16 10 C -0.11 -1.94 2.59 -89.72 -0.23 -2.17 16 11 H 0.08 1.40 8.13 -51.93 -0.42 0.98 16 12 C -0.14 -2.60 6.51 -25.35 -0.17 -2.76 16 13 C 0.18 4.33 5.44 -1.91 -0.01 4.32 16 14 N -0.59 -15.26 3.34 -162.91 -0.54 -15.80 16 15 C -0.23 -6.41 9.88 -15.05 -0.15 -6.55 16 16 H 0.08 2.15 7.44 -52.49 -0.39 1.76 16 17 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 18 N -0.92 -27.35 10.43 55.49 0.58 -26.77 16 19 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 20 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 23 C 0.16 3.33 2.78 -67.83 -0.19 3.14 16 24 H 0.02 0.52 7.94 -51.93 -0.41 0.11 16 25 C 0.11 2.26 5.69 -3.95 -0.02 2.24 16 26 C -0.15 -1.65 6.01 -25.83 -0.16 -1.80 16 27 C -0.13 -1.42 7.71 -25.83 -0.20 -1.62 16 28 C -0.13 -1.27 6.63 -25.92 -0.17 -1.45 16 29 H 0.07 0.57 8.06 -51.93 -0.42 0.15 16 30 H 0.03 0.29 7.48 -51.93 -0.39 -0.10 16 31 H 0.07 0.83 7.47 -51.93 -0.39 0.44 16 32 H 0.03 0.21 6.10 -51.93 -0.32 -0.10 16 33 H 0.07 0.46 6.19 -51.93 -0.32 0.14 16 34 H 0.07 0.42 8.04 -51.93 -0.42 0.00 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.11 1.24 4.83 -51.93 -0.25 0.99 16 37 H 0.06 0.89 7.99 -51.93 -0.41 0.48 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.04 0.96 7.77 -51.93 -0.40 0.56 16 42 H 0.06 1.49 7.19 -51.93 -0.37 1.12 16 43 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.09 1.97 6.78 -51.93 -0.35 1.62 16 45 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 46 H 0.09 0.75 6.16 -51.93 -0.32 0.43 16 47 H 0.08 1.05 7.56 -51.93 -0.39 0.65 16 48 H 0.09 1.16 7.76 -51.93 -0.40 0.76 16 49 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 50 H 0.08 0.85 8.09 -51.93 -0.42 0.43 16 51 H 0.10 0.74 5.59 -51.93 -0.29 0.45 16 LS Contribution 371.97 15.07 5.61 5.61 Total: -1.00 -31.73 371.97 -9.65 -41.39 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -8.77 Total: 0.67 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -0.58 Total: 3.38 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: -0.97 Total: -58.03 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.08 Total: -10.63 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.73 -9.65 -41.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042093156.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.796 kcal (2) G-P(sol) polarization free energy of solvation -31.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds