Wall clock time and date at job start Fri Apr 10 2020 18:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 111.00248 * 2 1 4 4 C 1.46903 * 111.00186 * 123.95786 * 2 1 3 5 5 C 1.50696 * 112.84937 * 65.24029 * 4 2 1 6 6 O 1.21281 * 120.00473 * 220.00070 * 5 4 2 7 7 N 1.34777 * 120.00151 * 40.00675 * 5 4 2 8 8 C 1.46602 * 119.75334 * 4.48849 * 7 5 4 9 9 C 1.54309 * 110.48412 * 132.17342 * 8 7 5 10 10 C 1.51975 * 107.20690 * 52.07616 * 9 8 7 11 11 H 1.09005 * 111.57490 * 56.72353 * 10 9 8 12 12 C 1.53310 * 114.31248 * 184.55295 * 10 9 8 13 13 C 1.55300 * 101.30326 * 154.30382 * 12 10 9 14 14 N 1.48152 * 107.04365 * 336.97250 * 13 12 10 15 15 C 1.36943 * 126.39878 * 175.02184 * 14 13 12 16 16 H 1.07993 * 120.00194 * 179.97438 * 15 14 13 17 17 C 1.38817 * 119.99606 * 359.97110 * 15 14 13 18 18 N 1.31614 * 120.00337 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99572 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46671 * 60.00785 * 19 17 15 21 21 H 1.48502 * 109.46678 * 180.02562 * 19 17 15 22 22 H 1.48491 * 109.47132 * 300.00450 * 19 17 15 23 23 C 1.45505 * 107.20489 * 354.99774 * 14 13 12 24 24 H 1.08998 * 109.56334 * 274.15946 * 23 14 13 25 25 C 1.47798 * 119.76074 * 184.75932 * 7 5 4 26 26 C 1.53781 * 113.61356 * 294.05006 * 4 2 1 27 27 C 1.53955 * 87.02069 * 220.04742 * 26 4 2 28 28 C 1.53780 * 113.61551 * 196.44341 * 4 2 1 29 29 H 1.09004 * 109.47010 * 55.07830 * 1 2 3 30 30 H 1.09004 * 109.46804 * 295.08634 * 1 2 3 31 31 H 1.08998 * 109.47417 * 175.08329 * 1 2 3 32 32 H 1.08999 * 109.47016 * 67.69807 * 3 2 1 33 33 H 1.09005 * 109.47132 * 187.69041 * 3 2 1 34 34 H 1.08993 * 109.47191 * 307.69439 * 3 2 1 35 35 H 1.08998 * 109.22660 * 252.57701 * 8 7 5 36 36 H 1.09002 * 109.22975 * 11.93564 * 8 7 5 37 37 H 1.09003 * 110.04774 * 292.59033 * 9 8 7 38 38 H 1.09002 * 109.80960 * 171.43097 * 9 8 7 39 39 H 1.08998 * 111.70487 * 36.12798 * 12 10 9 40 40 H 1.09002 * 110.73088 * 272.05623 * 12 10 9 41 41 H 1.09006 * 109.91774 * 217.62357 * 13 12 10 42 42 H 1.09001 * 110.08921 * 96.41820 * 13 12 10 43 43 H 0.97000 * 119.99916 * 179.97438 * 18 17 15 44 44 H 1.08996 * 110.06143 * 350.47797 * 25 7 5 45 45 H 1.09000 * 110.06396 * 112.03903 * 25 7 5 46 46 H 1.09004 * 113.60830 * 334.56599 * 26 4 2 47 47 H 1.08999 * 113.61517 * 105.46503 * 26 4 2 48 48 H 1.08998 * 113.53754 * 270.81238 * 27 26 4 49 49 H 1.08995 * 113.74437 * 139.94091 * 27 26 4 50 50 H 1.09003 * 113.61141 * 254.52314 * 28 4 2 51 51 H 1.09001 * 113.61354 * 25.34403 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7661 1.1375 5 6 1.6622 -2.2336 1.0592 6 8 1.3436 -2.8376 2.0615 7 7 1.7183 -2.8751 -0.1248 8 6 2.1986 -2.1659 -1.3146 9 6 3.2414 -3.0186 -2.0673 10 6 2.6216 -4.3870 -2.2973 11 1 1.6789 -4.3141 -2.8397 12 6 3.5667 -5.4077 -2.9419 13 6 2.9595 -6.7453 -2.4382 14 7 2.1950 -6.4387 -1.2067 15 6 1.4220 -7.3137 -0.4910 16 1 0.9072 -6.9778 0.3969 17 6 1.3002 -8.6325 -0.9071 18 7 1.9280 -9.0419 -1.9889 19 14 0.2463 -9.8262 0.0696 20 1 -1.1535 -9.3320 0.1098 21 1 0.2817 -11.1620 -0.5784 22 1 0.7734 -9.9338 1.4536 23 6 2.4195 -5.0343 -0.8993 24 1 3.3330 -4.9303 -0.3139 25 6 1.2895 -4.2866 -0.2155 26 6 1.6801 -0.1350 2.5040 27 6 3.1058 -0.5336 2.9270 28 6 3.4779 -0.4859 1.4356 29 1 -0.3633 0.5883 -0.8427 30 1 -0.3633 0.4357 0.9308 31 1 -0.3634 -1.0238 -0.0881 32 1 1.7616 1.8504 0.9508 33 1 3.0765 1.3456 -0.1375 34 1 1.5391 1.9358 -0.8131 35 1 1.3556 -1.9590 -1.9739 36 1 2.6554 -1.2239 -1.0110 37 1 4.1464 -3.1172 -1.4678 38 1 3.4780 -2.5530 -3.0241 39 1 4.5911 -5.2873 -2.5895 40 1 3.5204 -5.3434 -4.0291 41 1 3.7569 -7.4538 -2.2136 42 1 2.2942 -7.1627 -3.1940 43 1 1.8431 -9.9636 -2.2794 44 1 1.1231 -4.6917 0.7826 45 1 0.3779 -4.3632 -0.8081 46 1 1.5227 0.9428 2.4612 47 1 0.8981 -0.6565 3.0558 48 1 3.1681 -1.5315 3.3609 49 1 3.6126 0.2216 3.5277 50 1 4.1450 -1.2905 1.1262 51 1 3.8131 0.4951 1.0989 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042093156.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:04 Heat of formation + Delta-G solvation = 26.960344 kcal Electronic energy + Delta-G solvation = -29872.243186 eV Core-core repulsion = 26194.162349 eV Total energy + Delta-G solvation = -3678.080838 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.34353 -40.55250 -38.84158 -36.96387 -35.60226 -34.62202 -32.84972 -31.15457 -30.14074 -28.74963 -27.64827 -26.55883 -26.45396 -25.18236 -23.54521 -23.22215 -22.03780 -21.79967 -20.91571 -19.21155 -18.54937 -18.06643 -17.11407 -17.08054 -16.83681 -16.20941 -15.92596 -15.73252 -15.58893 -15.50840 -15.18028 -14.83265 -14.56231 -14.29784 -13.99145 -13.79938 -13.66744 -13.44374 -13.10157 -13.09369 -13.05242 -13.03910 -12.78554 -12.70480 -12.48830 -12.33095 -12.11881 -12.00050 -11.91532 -11.78834 -11.76514 -11.55814 -11.44245 -11.21692 -11.00082 -10.77204 -10.73954 -9.61761 -9.16785 -8.91965 -7.87711 -5.22673 1.41188 1.44178 1.49558 1.50640 1.93641 2.47799 2.79605 3.30016 3.39526 3.48716 3.53106 3.59711 3.83924 3.87411 4.00462 4.06696 4.22220 4.30124 4.32043 4.35229 4.41403 4.46307 4.56820 4.60783 4.65214 4.70735 4.71190 4.81312 4.87723 4.88445 4.93373 4.98907 5.01101 5.02897 5.06037 5.11673 5.14424 5.19133 5.20585 5.29371 5.38717 5.40847 5.54180 5.65979 5.67327 5.77719 5.86071 6.04855 6.17938 6.50036 7.06669 7.15446 7.75079 8.42415 9.22941 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.018165 B = 0.003930 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.038727 B = 7122.450518 C = 7893.378988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.523 5.523 3 C 0.012 3.988 4 C 0.069 3.931 5 C 0.532 3.468 6 O -0.591 6.591 7 N -0.589 5.589 8 C 0.113 3.887 9 C -0.114 4.114 10 C -0.094 4.094 11 H 0.073 0.927 12 C -0.122 4.122 13 C 0.180 3.820 14 N -0.614 5.614 15 C -0.240 4.240 16 H 0.072 0.928 17 C -0.060 4.060 18 N -0.947 5.947 19 Si 0.971 3.029 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.283 1.283 23 C 0.150 3.850 24 H 0.006 0.994 25 C 0.128 3.872 26 C -0.147 4.147 27 C -0.138 4.138 28 C -0.115 4.115 29 H 0.096 0.904 30 H 0.031 0.969 31 H 0.038 0.962 32 H 0.040 0.960 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.135 0.865 37 H 0.063 0.937 38 H 0.109 0.891 39 H 0.070 0.930 40 H 0.086 0.914 41 H -0.002 1.002 42 H 0.023 0.977 43 H 0.248 0.752 44 H 0.051 0.949 45 H 0.061 0.939 46 H 0.116 0.884 47 H 0.049 0.951 48 H 0.054 0.946 49 H 0.098 0.902 50 H 0.064 0.936 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.242 27.212 0.059 27.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.247 5.247 3 C -0.135 4.135 4 C -0.024 4.024 5 C 0.320 3.680 6 O -0.472 6.472 7 N -0.320 5.320 8 C -0.008 4.008 9 C -0.152 4.152 10 C -0.113 4.113 11 H 0.091 0.909 12 C -0.160 4.160 13 C 0.056 3.944 14 N -0.339 5.339 15 C -0.369 4.369 16 H 0.089 0.911 17 C -0.253 4.253 18 N -0.596 5.596 19 Si 0.800 3.200 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.209 1.209 23 C 0.042 3.958 24 H 0.023 0.977 25 C 0.005 3.995 26 C -0.186 4.186 27 C -0.175 4.175 28 C -0.153 4.153 29 H 0.114 0.886 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.152 0.848 37 H 0.081 0.919 38 H 0.127 0.873 39 H 0.089 0.911 40 H 0.105 0.895 41 H 0.016 0.984 42 H 0.042 0.958 43 H 0.057 0.943 44 H 0.070 0.930 45 H 0.079 0.921 46 H 0.134 0.866 47 H 0.068 0.932 48 H 0.073 0.927 49 H 0.117 0.883 50 H 0.083 0.917 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.159 26.428 0.095 26.617 hybrid contribution -1.159 -1.672 1.444 2.495 sum 2.000 24.756 1.539 24.884 Atomic orbital electron populations 1.22376 0.87035 1.01365 1.01725 1.62245 1.08257 1.15316 1.38886 1.22721 1.02246 0.86584 1.01939 1.22418 0.99597 0.89076 0.91324 1.20508 0.76074 0.89229 0.82221 1.90669 1.50604 1.69218 1.36663 1.48251 1.62903 1.10946 1.09946 1.22360 0.97502 0.95874 0.85059 1.21972 0.97903 0.93444 1.01895 1.22131 0.99111 0.95169 0.94923 0.90869 1.22543 0.98349 0.94386 1.00719 1.21373 0.92577 0.93306 0.87178 1.44469 1.55519 1.05389 1.28565 1.19254 1.21211 0.90839 1.05581 0.91052 1.25542 1.01988 0.98639 0.99142 1.70141 1.47475 1.16101 1.25881 0.85263 0.78794 0.78180 0.77799 1.20333 1.21399 1.20906 1.21106 0.94402 0.84416 0.95863 0.97684 1.21258 0.97108 0.81045 1.00138 1.23396 0.98284 1.01649 0.95320 1.22723 0.96179 1.01709 0.96930 1.23289 0.91685 1.04635 0.95696 0.88584 0.95086 0.94261 0.94169 0.89134 0.89313 0.91255 0.84772 0.91870 0.87260 0.91099 0.89544 0.98364 0.95835 0.94305 0.93004 0.92075 0.86561 0.93210 0.92707 0.88342 0.91682 0.84609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.25 127.69 1.18 1.57 16 2 N -0.52 -8.12 2.06 -899.95 -1.86 -9.98 16 3 C 0.01 0.10 8.62 127.69 1.10 1.20 16 4 C 0.07 1.47 0.25 3.31 0.00 1.47 16 5 C 0.53 17.32 5.82 87.66 0.51 17.83 16 6 O -0.59 -24.95 14.83 -3.03 -0.04 -24.99 16 7 N -0.59 -18.89 3.00 -817.99 -2.46 -21.35 16 8 C 0.11 2.62 5.34 86.80 0.46 3.08 16 9 C -0.11 -2.70 5.70 30.70 0.18 -2.52 16 10 C -0.09 -3.16 2.59 -10.21 -0.03 -3.18 16 11 H 0.07 2.56 8.13 -2.38 -0.02 2.54 16 12 C -0.12 -4.40 6.51 31.49 0.20 -4.19 16 13 C 0.18 9.15 5.44 86.85 0.47 9.62 16 14 N -0.61 -33.11 3.34 -669.33 -2.24 -35.35 16 15 C -0.24 -14.22 9.88 84.03 0.83 -13.39 16 16 H 0.07 4.20 7.44 -2.91 -0.02 4.18 16 17 C -0.06 -3.56 5.49 84.86 0.47 -3.09 16 18 N -0.95 -58.60 10.43 21.65 0.23 -58.37 16 19 Si 0.97 48.19 29.55 68.60 2.03 50.22 16 20 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 21 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 22 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 23 C 0.15 6.54 2.78 45.59 0.13 6.67 16 24 H 0.01 0.27 7.94 -2.39 -0.02 0.25 16 25 C 0.13 5.31 5.69 85.73 0.49 5.79 16 26 C -0.15 -2.94 6.01 31.18 0.19 -2.75 16 27 C -0.14 -2.68 7.71 31.18 0.24 -2.44 16 28 C -0.12 -1.93 6.63 31.12 0.21 -1.72 16 29 H 0.10 1.16 8.06 -2.38 -0.02 1.15 16 30 H 0.03 0.52 7.48 -2.38 -0.02 0.50 16 31 H 0.04 0.90 7.47 -2.39 -0.02 0.89 16 32 H 0.04 0.30 6.10 -2.39 -0.01 0.29 16 33 H 0.09 0.51 6.19 -2.38 -0.01 0.50 16 34 H 0.09 0.51 8.04 -2.39 -0.02 0.49 16 35 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.13 2.49 4.83 -2.39 -0.01 2.47 16 37 H 0.06 1.56 7.99 -2.39 -0.02 1.54 16 38 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.07 2.37 8.13 -2.39 -0.02 2.35 16 40 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 41 H 0.00 -0.11 7.77 -2.38 -0.02 -0.13 16 42 H 0.02 1.32 7.19 -2.39 -0.02 1.30 16 43 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 44 H 0.05 2.50 6.78 -2.39 -0.02 2.48 16 45 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 46 H 0.12 1.61 6.16 -2.38 -0.01 1.59 16 47 H 0.05 1.31 7.56 -2.39 -0.02 1.30 16 48 H 0.05 1.46 7.76 -2.39 -0.02 1.44 16 49 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 50 H 0.06 1.28 8.09 -2.39 -0.02 1.26 16 51 H 0.14 1.27 5.59 -2.39 -0.01 1.26 16 Total: -1.00 -76.50 371.97 3.19 -73.31 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 0.90 Total: 12.57 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: 6.63 Total: 13.93 kcal Atomic # 7 Polarization: -118.72 SS G_CDS: -6.32 Total: -125.04 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -0.04 Total: -24.99 kcal Atomic # 14 Polarization: 48.19 SS G_CDS: 2.03 Total: 50.22 kcal Total: -76.50 3.19 -73.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042093156.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.273 kcal (2) G-P(sol) polarization free energy of solvation -76.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds