Wall clock time and date at job start Fri Apr 10 2020 18:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46498 * 120.00095 * 2 1 4 4 C 1.52997 * 109.47178 * 95.03120 * 3 2 1 5 5 H 1.08995 * 112.77880 * 47.66764 * 4 3 2 6 6 C 1.53244 * 113.38364 * 276.96208 * 4 3 2 7 7 C 1.53498 * 83.42960 * 219.29042 * 6 4 3 8 8 N 1.47065 * 87.98490 * 25.89767 * 7 6 4 9 9 C 1.36942 * 136.05984 * 152.84528 * 8 7 6 10 10 H 1.07994 * 120.00250 * 175.04636 * 9 8 7 11 11 C 1.38811 * 119.99648 * 354.76555 * 9 8 7 12 12 N 1.31622 * 119.99994 * 0.27785 * 11 9 8 13 13 Si 1.86798 * 120.00099 * 180.27468 * 11 9 8 14 14 H 1.48500 * 109.47125 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47089 * 120.00150 * 13 11 9 16 16 H 1.48496 * 109.47367 * 240.00238 * 13 11 9 17 17 C 1.34775 * 119.99854 * 180.02562 * 2 1 3 18 18 O 1.21285 * 119.99926 * 183.45463 * 17 2 1 19 19 C 1.51499 * 120.00242 * 3.44951 * 17 2 1 20 20 C 1.52461 * 108.87158 * 50.84423 * 19 17 2 21 21 C 1.52147 * 112.62524 * 171.15008 * 20 19 17 22 22 C 1.52224 * 112.67882 * 314.88784 * 21 20 19 23 23 N 1.45863 * 112.38917 * 46.66827 * 22 21 20 24 24 C 1.45844 * 113.92773 * 70.76105 * 23 22 21 25 25 C 1.52268 * 112.33142 * 289.29326 * 24 23 22 26 26 C 1.52153 * 112.63008 * 313.15742 * 25 24 23 27 27 C 1.46472 * 112.02185 * 302.25306 * 23 22 21 28 28 H 1.08997 * 109.47515 * 84.17810 * 1 2 3 29 29 H 1.09002 * 109.47090 * 204.17775 * 1 2 3 30 30 H 1.09000 * 109.47164 * 324.18139 * 1 2 3 31 31 H 1.09002 * 109.47030 * 335.02774 * 3 2 1 32 32 H 1.08996 * 109.47119 * 215.03353 * 3 2 1 33 33 H 1.08998 * 114.32370 * 105.65767 * 6 4 3 34 34 H 1.08997 * 114.19382 * 332.91615 * 6 4 3 35 35 H 1.08998 * 113.47057 * 271.11680 * 7 6 4 36 36 H 1.09003 * 113.46828 * 140.67383 * 7 6 4 37 37 H 0.97004 * 120.00174 * 179.97438 * 12 11 9 38 38 H 1.09701 * 109.16619 * 292.68915 * 20 19 17 39 39 H 1.09764 * 109.04160 * 49.76506 * 20 19 17 40 40 H 1.10573 * 108.03925 * 195.76590 * 21 20 19 41 41 H 1.08755 * 110.88028 * 79.67777 * 21 20 19 42 42 H 1.09677 * 109.10675 * 285.36844 * 22 21 20 43 43 H 1.09646 * 109.15904 * 168.02374 * 22 21 20 44 44 H 1.09636 * 109.26165 * 168.02897 * 24 23 22 45 45 H 1.09641 * 109.26739 * 50.53647 * 24 23 22 46 46 H 1.10553 * 107.90273 * 194.01554 * 25 24 23 47 47 H 1.08682 * 110.82003 * 78.04756 * 25 24 23 48 48 H 1.09701 * 109.24894 * 284.06479 * 26 25 24 49 49 H 1.09689 * 109.24529 * 166.79553 * 26 25 24 50 50 H 1.08889 * 109.93682 * 305.24007 * 27 23 22 51 51 H 1.08894 * 109.92287 * 184.23987 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5621 1.6471 1.4369 5 1 3.0016 0.8190 1.9928 6 6 1.4264 2.3513 2.1872 7 6 2.5678 3.2090 2.7509 8 7 3.3346 2.8946 1.5360 9 6 4.3271 3.4998 0.8122 10 1 4.7735 2.9864 -0.0266 11 6 4.7553 4.7755 1.1529 12 7 4.2111 5.4012 2.1751 13 14 6.1037 5.6042 0.1609 14 1 6.5455 4.6969 -0.9286 15 1 5.5828 6.8649 -0.4262 16 1 7.2545 5.9099 1.0483 17 6 2.1388 -1.1672 -0.0005 18 8 3.3500 -1.1682 0.0628 19 6 1.3834 -2.4780 -0.0800 20 6 0.4076 -2.4146 -1.2498 21 6 -0.2426 -3.7586 -1.5431 22 6 0.7566 -4.9070 -1.5406 23 7 1.6476 -4.8657 -0.3864 24 6 0.9950 -5.1910 0.8766 25 6 0.0403 -4.0963 1.3334 26 6 0.6543 -2.7073 1.2393 27 6 2.3925 -3.6067 -0.3124 28 1 -0.3634 0.1042 -1.0223 29 1 -0.3633 -0.9375 0.4209 30 1 -0.3633 0.8333 0.6014 31 1 1.5724 2.0492 -0.4339 32 1 3.1079 1.1626 -0.5899 33 1 0.9257 1.7298 2.9296 34 1 0.7351 2.8947 1.5431 35 1 3.0089 2.8012 3.6604 36 1 2.3130 4.2649 2.8422 37 1 4.5106 6.2925 2.4135 38 1 -0.3726 -1.6760 -1.0283 39 1 0.9425 -2.0695 -2.1440 40 1 -0.6980 -3.7062 -2.5493 41 1 -1.0570 -3.9547 -0.8496 42 1 1.3539 -4.8652 -2.4595 43 1 0.2114 -5.8583 -1.5422 44 1 1.7580 -5.3475 1.6482 45 1 0.4386 -6.1292 0.7652 46 1 -0.2137 -4.2869 2.3923 47 1 -0.8951 -4.1448 0.7823 48 1 1.3601 -2.5670 2.0673 49 1 -0.1358 -1.9545 1.3496 50 1 2.9256 -3.4352 -1.2462 51 1 3.0993 -3.6418 0.5152 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085669262.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:13 Heat of formation + Delta-G solvation = 46.021929 kcal Electronic energy + Delta-G solvation = -29399.521906 eV Core-core repulsion = 25722.267641 eV Total energy + Delta-G solvation = -3677.254265 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.48822 -39.07862 -37.82646 -35.48173 -33.56747 -33.37135 -32.10776 -30.99662 -28.55269 -27.88161 -26.71017 -26.49673 -24.34961 -23.40641 -23.10063 -21.91164 -21.76339 -19.40293 -19.08021 -18.72979 -16.92060 -16.51884 -16.39104 -15.89557 -15.53918 -15.19391 -14.74161 -14.60875 -14.50414 -14.13887 -13.75868 -13.66514 -13.40697 -13.29214 -12.90540 -12.75773 -12.70899 -12.51258 -12.47071 -11.92807 -11.74456 -11.66459 -11.51544 -11.22286 -11.10449 -11.07602 -10.88593 -10.81874 -10.72408 -10.70825 -10.38979 -10.09141 -9.79970 -9.76179 -9.57542 -9.31085 -8.73939 -8.26174 -8.22993 -6.81793 -5.71044 -3.04414 2.82331 3.17509 3.42357 3.48339 3.50824 3.76379 4.26278 4.40047 4.42936 4.50909 4.64041 4.67405 4.85677 4.87164 4.93449 4.99890 5.15733 5.22977 5.25675 5.30337 5.34599 5.40804 5.50146 5.51286 5.56287 5.56434 5.63237 5.64196 5.71958 5.77899 5.80623 5.84933 5.85994 6.01073 6.03744 6.09439 6.09849 6.21092 6.32176 6.47878 6.59849 6.72423 6.90513 6.92977 7.07961 7.28207 7.48222 7.62533 7.63291 8.04631 8.40589 9.09622 9.76033 10.70106 11.45643 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.024180 B = 0.003147 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.690837 B = 8896.173829 C = 9249.563331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.606 5.606 3 C 0.117 3.883 4 C 0.136 3.864 5 H 0.044 0.956 6 C -0.166 4.166 7 C 0.148 3.852 8 N -0.601 5.601 9 C -0.213 4.213 10 H 0.080 0.920 11 C -0.009 4.009 12 N -0.920 5.920 13 Si 0.911 3.089 14 H -0.279 1.279 15 H -0.290 1.290 16 H -0.291 1.291 17 C 0.518 3.482 18 O -0.531 6.531 19 C -0.101 4.101 20 C -0.122 4.122 21 C -0.150 4.150 22 C 0.065 3.935 23 N -0.546 5.546 24 C 0.066 3.934 25 C -0.150 4.150 26 C -0.110 4.110 27 C 0.091 3.909 28 H 0.054 0.946 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.020 0.980 36 H 0.076 0.924 37 H 0.252 0.748 38 H 0.084 0.916 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.068 0.932 48 H 0.068 0.932 49 H 0.076 0.924 50 H 0.081 0.919 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.191 -20.470 -4.704 25.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.339 5.339 3 C -0.006 4.006 4 C 0.028 3.972 5 H 0.062 0.938 6 C -0.205 4.205 7 C 0.023 3.977 8 N -0.326 5.326 9 C -0.340 4.340 10 H 0.098 0.902 11 C -0.205 4.205 12 N -0.568 5.568 13 Si 0.741 3.259 14 H -0.204 1.204 15 H -0.217 1.217 16 H -0.218 1.218 17 C 0.304 3.696 18 O -0.407 6.407 19 C -0.106 4.106 20 C -0.159 4.159 21 C -0.189 4.189 22 C -0.063 4.063 23 N -0.266 5.266 24 C -0.062 4.062 25 C -0.189 4.189 26 C -0.147 4.147 27 C -0.037 4.037 28 H 0.073 0.927 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.038 0.962 36 H 0.094 0.906 37 H 0.062 0.938 38 H 0.103 0.897 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.082 0.918 47 H 0.086 0.914 48 H 0.087 0.913 49 H 0.095 0.905 50 H 0.099 0.901 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.963 -20.545 -4.849 25.309 hybrid contribution 0.110 1.284 -0.233 1.310 sum -13.853 -19.261 -5.081 24.263 Atomic orbital electron populations 1.22420 0.80621 1.03734 1.01553 1.47839 1.06518 1.06437 1.73068 1.21853 0.96652 0.82680 0.99384 1.22332 0.90765 0.90994 0.93087 0.93843 1.23658 0.96888 0.99945 0.99978 1.22087 0.87180 0.99362 0.89084 1.45623 1.42590 1.17924 1.26505 1.18976 1.10337 0.96411 1.08269 0.90232 1.24781 1.00284 0.96852 0.98574 1.69840 1.44520 1.13711 1.28703 0.86055 0.81306 0.79313 0.79204 1.20397 1.21737 1.21771 1.20686 0.87823 0.84857 0.76228 1.90733 1.13915 1.87006 1.49009 1.21205 0.97852 0.94647 0.96873 1.21782 0.98928 0.98058 0.97175 1.21993 0.99053 0.95532 1.02332 1.21781 0.93634 0.97326 0.93529 1.60243 1.29650 1.33347 1.03388 1.21776 0.96562 0.96897 0.90986 1.21985 0.99475 0.95180 1.02267 1.21497 1.00243 0.97322 0.95684 1.21795 0.93868 0.84363 1.03673 0.92733 0.89478 0.90993 0.90371 0.90520 0.93039 0.90685 0.96209 0.90557 0.93823 0.89731 0.91771 0.92002 0.91401 0.90995 0.91067 0.90837 0.91022 0.91827 0.91363 0.91336 0.90545 0.90094 0.89568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.61 8.49 59.85 0.51 1.12 16 2 N -0.61 -8.89 2.87 -181.23 -0.52 -9.42 16 3 C 0.12 2.19 5.27 -4.04 -0.02 2.17 16 4 C 0.14 2.92 4.28 -72.52 -0.31 2.61 16 5 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 6 C -0.17 -3.17 7.70 -26.35 -0.20 -3.37 16 7 C 0.15 3.61 7.53 -8.50 -0.06 3.55 16 8 N -0.60 -15.88 3.65 -177.15 -0.65 -16.53 16 9 C -0.21 -6.14 10.55 -15.06 -0.16 -6.30 16 10 H 0.08 2.26 7.83 -52.49 -0.41 1.85 16 11 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 12 N -0.92 -27.86 11.42 55.49 0.63 -27.23 16 13 Si 0.91 22.78 29.55 -169.99 -5.02 17.76 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 16 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 17 C 0.52 8.04 6.31 -10.59 -0.07 7.97 16 18 O -0.53 -10.69 15.62 5.55 0.09 -10.61 16 19 C -0.10 -1.12 0.43 -155.73 -0.07 -1.19 16 20 C -0.12 -1.11 4.11 -27.44 -0.11 -1.22 16 21 C -0.15 -1.09 5.13 -27.56 -0.14 -1.23 16 22 C 0.07 0.52 5.77 -4.78 -0.03 0.49 16 23 N -0.55 -5.29 4.79 -236.51 -1.13 -6.42 16 24 C 0.07 0.54 5.77 -4.77 -0.03 0.51 16 25 C -0.15 -1.14 5.13 -27.54 -0.14 -1.28 16 26 C -0.11 -1.06 4.44 -27.43 -0.12 -1.18 16 27 C 0.09 1.09 4.24 -3.97 -0.02 1.07 16 28 H 0.05 0.48 7.35 -51.93 -0.38 0.10 16 29 H 0.09 0.74 2.75 -51.93 -0.14 0.59 16 30 H 0.07 0.73 7.81 -51.93 -0.41 0.33 16 31 H 0.08 1.40 7.83 -51.93 -0.41 0.99 16 32 H 0.08 1.65 7.63 -51.93 -0.40 1.25 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.07 1.36 7.97 -51.93 -0.41 0.95 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.08 2.03 6.92 -51.93 -0.36 1.67 16 37 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.08 0.68 4.09 -51.53 -0.21 0.47 16 39 H 0.06 0.66 8.14 -51.49 -0.42 0.24 16 40 H 0.06 0.40 8.27 -51.03 -0.42 -0.03 16 41 H 0.07 0.45 5.70 -52.07 -0.30 0.15 16 42 H 0.07 0.59 8.20 -51.54 -0.42 0.17 16 43 H 0.07 0.48 8.10 -51.56 -0.42 0.06 16 44 H 0.07 0.63 8.20 -51.57 -0.42 0.21 16 45 H 0.07 0.49 8.10 -51.57 -0.42 0.07 16 46 H 0.06 0.43 8.27 -51.04 -0.42 0.01 16 47 H 0.07 0.46 5.69 -52.11 -0.30 0.16 16 48 H 0.07 0.78 8.14 -51.53 -0.42 0.36 16 49 H 0.08 0.67 5.19 -51.54 -0.27 0.40 16 50 H 0.08 1.05 8.13 -51.99 -0.42 0.63 16 51 H 0.09 1.16 7.96 -51.99 -0.41 0.75 16 LS Contribution 370.86 15.07 5.59 5.59 Total: -1.00 -33.45 370.86 -10.67 -44.13 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -8.59 Total: -0.63 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -1.07 Total: 3.36 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: -1.67 Total: -59.60 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.61 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.45 -10.67 -44.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085669262.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.148 kcal (2) G-P(sol) polarization free energy of solvation -33.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds