Wall clock time and date at job start Fri Apr 10 2020 18:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46498 * 120.00095 * 2 1 4 4 C 1.52997 * 109.47178 * 95.03120 * 3 2 1 5 5 H 1.08995 * 112.77880 * 47.66764 * 4 3 2 6 6 C 1.53244 * 113.38364 * 276.96208 * 4 3 2 7 7 C 1.53498 * 83.42960 * 219.29042 * 6 4 3 8 8 N 1.47065 * 87.98490 * 25.89767 * 7 6 4 9 9 C 1.36942 * 136.05984 * 152.84528 * 8 7 6 10 10 H 1.07994 * 120.00250 * 175.04636 * 9 8 7 11 11 C 1.38811 * 119.99648 * 354.76555 * 9 8 7 12 12 N 1.31622 * 119.99994 * 0.27785 * 11 9 8 13 13 Si 1.86798 * 120.00099 * 180.27468 * 11 9 8 14 14 H 1.48500 * 109.47125 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47089 * 120.00150 * 13 11 9 16 16 H 1.48496 * 109.47367 * 240.00238 * 13 11 9 17 17 C 1.34775 * 119.99854 * 180.02562 * 2 1 3 18 18 O 1.21285 * 119.99926 * 183.45463 * 17 2 1 19 19 C 1.51499 * 120.00242 * 3.44951 * 17 2 1 20 20 C 1.52461 * 108.87158 * 50.84423 * 19 17 2 21 21 C 1.52147 * 112.62524 * 171.15008 * 20 19 17 22 22 C 1.52224 * 112.67882 * 314.88784 * 21 20 19 23 23 N 1.45863 * 112.38917 * 46.66827 * 22 21 20 24 24 C 1.45844 * 113.92773 * 70.76105 * 23 22 21 25 25 C 1.52268 * 112.33142 * 289.29326 * 24 23 22 26 26 C 1.52153 * 112.63008 * 313.15742 * 25 24 23 27 27 C 1.46472 * 112.02185 * 302.25306 * 23 22 21 28 28 H 1.08997 * 109.47515 * 84.17810 * 1 2 3 29 29 H 1.09002 * 109.47090 * 204.17775 * 1 2 3 30 30 H 1.09000 * 109.47164 * 324.18139 * 1 2 3 31 31 H 1.09002 * 109.47030 * 335.02774 * 3 2 1 32 32 H 1.08996 * 109.47119 * 215.03353 * 3 2 1 33 33 H 1.08998 * 114.32370 * 105.65767 * 6 4 3 34 34 H 1.08997 * 114.19382 * 332.91615 * 6 4 3 35 35 H 1.08998 * 113.47057 * 271.11680 * 7 6 4 36 36 H 1.09003 * 113.46828 * 140.67383 * 7 6 4 37 37 H 0.97004 * 120.00174 * 179.97438 * 12 11 9 38 38 H 1.09701 * 109.16619 * 292.68915 * 20 19 17 39 39 H 1.09764 * 109.04160 * 49.76506 * 20 19 17 40 40 H 1.10573 * 108.03925 * 195.76590 * 21 20 19 41 41 H 1.08755 * 110.88028 * 79.67777 * 21 20 19 42 42 H 1.09677 * 109.10675 * 285.36844 * 22 21 20 43 43 H 1.09646 * 109.15904 * 168.02374 * 22 21 20 44 44 H 1.09636 * 109.26165 * 168.02897 * 24 23 22 45 45 H 1.09641 * 109.26739 * 50.53647 * 24 23 22 46 46 H 1.10553 * 107.90273 * 194.01554 * 25 24 23 47 47 H 1.08682 * 110.82003 * 78.04756 * 25 24 23 48 48 H 1.09701 * 109.24894 * 284.06479 * 26 25 24 49 49 H 1.09689 * 109.24529 * 166.79553 * 26 25 24 50 50 H 1.08889 * 109.93682 * 305.24007 * 27 23 22 51 51 H 1.08894 * 109.92287 * 184.23987 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.5621 1.6471 1.4369 5 1 3.0016 0.8190 1.9928 6 6 1.4264 2.3513 2.1872 7 6 2.5678 3.2090 2.7509 8 7 3.3346 2.8946 1.5360 9 6 4.3271 3.4998 0.8122 10 1 4.7735 2.9864 -0.0266 11 6 4.7553 4.7755 1.1529 12 7 4.2111 5.4012 2.1751 13 14 6.1037 5.6042 0.1609 14 1 6.5455 4.6969 -0.9286 15 1 5.5828 6.8649 -0.4262 16 1 7.2545 5.9099 1.0483 17 6 2.1388 -1.1672 -0.0005 18 8 3.3500 -1.1682 0.0628 19 6 1.3834 -2.4780 -0.0800 20 6 0.4076 -2.4146 -1.2498 21 6 -0.2426 -3.7586 -1.5431 22 6 0.7566 -4.9070 -1.5406 23 7 1.6476 -4.8657 -0.3864 24 6 0.9950 -5.1910 0.8766 25 6 0.0403 -4.0963 1.3334 26 6 0.6543 -2.7073 1.2393 27 6 2.3925 -3.6067 -0.3124 28 1 -0.3634 0.1042 -1.0223 29 1 -0.3633 -0.9375 0.4209 30 1 -0.3633 0.8333 0.6014 31 1 1.5724 2.0492 -0.4339 32 1 3.1079 1.1626 -0.5899 33 1 0.9257 1.7298 2.9296 34 1 0.7351 2.8947 1.5431 35 1 3.0089 2.8012 3.6604 36 1 2.3130 4.2649 2.8422 37 1 4.5106 6.2925 2.4135 38 1 -0.3726 -1.6760 -1.0283 39 1 0.9425 -2.0695 -2.1440 40 1 -0.6980 -3.7062 -2.5493 41 1 -1.0570 -3.9547 -0.8496 42 1 1.3539 -4.8652 -2.4595 43 1 0.2114 -5.8583 -1.5422 44 1 1.7580 -5.3475 1.6482 45 1 0.4386 -6.1292 0.7652 46 1 -0.2137 -4.2869 2.3923 47 1 -0.8951 -4.1448 0.7823 48 1 1.3601 -2.5670 2.0673 49 1 -0.1358 -1.9545 1.3496 50 1 2.9256 -3.4352 -1.2462 51 1 3.0993 -3.6418 0.5152 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085669262.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:12 Heat of formation + Delta-G solvation = 23.225785 kcal Electronic energy + Delta-G solvation = -29400.510421 eV Core-core repulsion = 25722.267641 eV Total energy + Delta-G solvation = -3678.242780 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.42758 -40.41122 -39.38939 -36.75154 -34.62229 -34.14985 -33.99531 -31.77639 -29.97326 -29.89374 -27.65748 -27.34363 -25.52321 -25.30284 -24.15331 -23.21503 -22.40919 -21.12361 -20.34960 -19.56070 -18.75258 -17.76370 -17.51111 -17.08569 -16.76624 -16.40095 -16.04877 -15.90902 -15.59084 -15.42776 -15.01351 -14.97594 -14.45326 -14.17152 -14.05361 -13.77081 -13.75744 -13.54626 -13.52548 -13.42956 -13.34421 -13.00733 -12.68189 -12.58214 -12.47052 -12.43024 -12.24873 -11.89164 -11.85067 -11.79829 -11.67921 -11.63897 -11.53824 -11.28265 -10.88334 -10.71612 -10.55701 -9.60676 -8.98447 -8.93490 -7.93137 -5.28090 1.40998 1.42505 1.53012 1.61322 1.96527 2.45066 3.01033 3.26509 3.36151 3.46035 3.60813 3.63777 3.78496 3.96090 3.98379 4.05357 4.18137 4.21790 4.25573 4.27275 4.29792 4.41252 4.48776 4.52708 4.55058 4.62594 4.69062 4.75995 4.81638 4.88451 4.90109 4.95653 4.96223 5.01903 5.02908 5.04751 5.08618 5.12159 5.13003 5.21039 5.27760 5.29429 5.44940 5.50267 5.52115 5.72061 5.93065 6.15645 6.42232 6.44171 6.89030 7.18233 7.56750 8.58191 9.23254 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.024180 B = 0.003147 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.690837 B = 8896.173829 C = 9249.563331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.601 5.601 3 C 0.133 3.867 4 C 0.137 3.863 5 H 0.020 0.980 6 C -0.125 4.125 7 C 0.138 3.862 8 N -0.631 5.631 9 C -0.226 4.226 10 H 0.072 0.928 11 C -0.063 4.063 12 N -0.949 5.949 13 Si 0.977 3.023 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.292 1.292 17 C 0.509 3.491 18 O -0.590 6.590 19 C -0.087 4.087 20 C -0.120 4.120 21 C -0.144 4.144 22 C 0.061 3.939 23 N -0.554 5.554 24 C 0.062 3.938 25 C -0.144 4.144 26 C -0.108 4.108 27 C 0.095 3.905 28 H 0.077 0.923 29 H 0.110 0.890 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.037 0.963 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.007 0.993 36 H 0.050 0.950 37 H 0.249 0.751 38 H 0.104 0.896 39 H 0.047 0.953 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.062 0.938 43 H 0.093 0.907 44 H 0.060 0.940 45 H 0.094 0.906 46 H 0.077 0.923 47 H 0.090 0.910 48 H 0.043 0.957 49 H 0.095 0.905 50 H 0.059 0.941 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.896 -21.992 -5.504 29.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.333 5.333 3 C 0.009 3.991 4 C 0.029 3.971 5 H 0.038 0.962 6 C -0.163 4.163 7 C 0.013 3.987 8 N -0.357 5.357 9 C -0.354 4.354 10 H 0.090 0.910 11 C -0.256 4.256 12 N -0.598 5.598 13 Si 0.805 3.195 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.219 1.219 17 C 0.298 3.702 18 O -0.470 6.470 19 C -0.092 4.092 20 C -0.157 4.157 21 C -0.183 4.183 22 C -0.067 4.067 23 N -0.275 5.275 24 C -0.066 4.066 25 C -0.182 4.182 26 C -0.146 4.146 27 C -0.034 4.034 28 H 0.096 0.904 29 H 0.128 0.872 30 H 0.100 0.900 31 H 0.109 0.891 32 H 0.056 0.944 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.025 0.975 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.122 0.878 39 H 0.066 0.934 40 H 0.097 0.903 41 H 0.105 0.895 42 H 0.081 0.919 43 H 0.111 0.889 44 H 0.079 0.921 45 H 0.113 0.887 46 H 0.096 0.904 47 H 0.109 0.891 48 H 0.062 0.938 49 H 0.113 0.887 50 H 0.077 0.923 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.735 -22.104 -5.658 28.899 hybrid contribution 1.312 1.677 0.046 2.130 sum -16.423 -20.427 -5.613 26.804 Atomic orbital electron populations 1.22780 0.77182 1.05467 1.03553 1.47879 1.08451 1.04668 1.72312 1.21398 0.95984 0.84989 0.96762 1.22367 0.90867 0.88896 0.94942 0.96230 1.23417 0.95146 0.98073 0.99647 1.22135 0.89406 0.98748 0.88422 1.46027 1.42613 1.19840 1.27199 1.19214 1.11038 0.96831 1.08340 0.91024 1.25592 1.02710 0.97485 0.99831 1.70011 1.45850 1.13805 1.30135 0.85037 0.78340 0.78287 0.77842 1.19595 1.20986 1.21903 1.21627 0.87461 0.86438 0.74718 1.90703 1.16801 1.87933 1.51606 1.21153 0.97811 0.91150 0.99084 1.21818 0.98554 1.00107 0.95203 1.21947 0.98879 0.93567 1.03929 1.21890 0.93594 0.98894 0.92284 1.60207 1.30814 1.31589 1.04861 1.21874 0.96601 0.98236 0.89894 1.21939 0.99654 0.93034 1.03613 1.21530 0.99959 0.99609 0.93467 1.21551 0.94114 0.86332 1.01373 0.90437 0.87213 0.89974 0.89051 0.94417 0.89175 0.88799 0.97493 0.93202 0.94161 0.87782 0.93430 0.90311 0.89457 0.91923 0.88902 0.92109 0.88733 0.90440 0.89137 0.93809 0.88739 0.92251 0.92398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.85 8.49 127.77 1.08 1.93 16 2 N -0.60 -17.16 2.87 -845.69 -2.43 -19.59 16 3 C 0.13 5.02 5.27 86.38 0.46 5.47 16 4 C 0.14 5.93 4.28 41.71 0.18 6.11 16 5 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 6 C -0.12 -4.54 7.70 30.84 0.24 -4.31 16 7 C 0.14 6.86 7.53 83.18 0.63 7.48 16 8 N -0.63 -34.35 3.65 -714.37 -2.61 -36.96 16 9 C -0.23 -13.50 10.55 84.03 0.89 -12.62 16 10 H 0.07 4.26 7.83 -2.91 -0.02 4.24 16 11 C -0.06 -3.75 5.50 84.86 0.47 -3.29 16 12 N -0.95 -58.96 11.42 21.65 0.25 -58.71 16 13 Si 0.98 47.93 29.55 68.60 2.03 49.96 16 14 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 15 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 16 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 17 C 0.51 16.16 6.31 87.91 0.55 16.72 16 18 O -0.59 -25.60 15.62 -3.05 -0.05 -25.65 16 19 C -0.09 -1.87 0.43 -52.97 -0.02 -1.89 16 20 C -0.12 -1.85 4.11 30.13 0.12 -1.73 16 21 C -0.14 -1.52 5.13 30.06 0.15 -1.37 16 22 C 0.06 0.81 5.77 86.24 0.50 1.31 16 23 N -0.55 -10.10 4.79 -902.17 -4.32 -14.42 16 24 C 0.06 0.86 5.77 86.26 0.50 1.36 16 25 C -0.14 -1.66 5.13 30.07 0.15 -1.50 16 26 C -0.11 -1.85 4.44 30.14 0.13 -1.72 16 27 C 0.10 2.36 4.24 86.44 0.37 2.73 16 28 H 0.08 1.02 7.35 -2.39 -0.02 1.00 16 29 H 0.11 1.35 2.75 -2.39 -0.01 1.34 16 30 H 0.08 1.28 7.81 -2.39 -0.02 1.26 16 31 H 0.09 3.18 7.83 -2.39 -0.02 3.16 16 32 H 0.04 1.71 7.63 -2.39 -0.02 1.69 16 33 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.09 3.11 7.97 -2.39 -0.02 3.09 16 35 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.05 2.72 6.92 -2.39 -0.02 2.70 16 37 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 38 H 0.10 1.20 4.09 -2.01 -0.01 1.19 16 39 H 0.05 0.91 8.14 -1.98 -0.02 0.89 16 40 H 0.08 0.65 8.27 -1.54 -0.01 0.64 16 41 H 0.09 0.64 5.70 -2.52 -0.01 0.62 16 42 H 0.06 0.94 8.20 -2.03 -0.02 0.93 16 43 H 0.09 0.88 8.10 -2.04 -0.02 0.86 16 44 H 0.06 0.99 8.20 -2.05 -0.02 0.98 16 45 H 0.09 0.94 8.10 -2.05 -0.02 0.92 16 46 H 0.08 0.75 8.27 -1.55 -0.01 0.74 16 47 H 0.09 0.70 5.69 -2.55 -0.01 0.69 16 48 H 0.04 0.97 8.14 -2.01 -0.02 0.95 16 49 H 0.09 1.25 5.19 -2.02 -0.01 1.24 16 50 H 0.06 1.68 8.13 -2.45 -0.02 1.66 16 51 H 0.06 1.72 7.96 -2.44 -0.02 1.70 16 Total: -1.00 -78.79 370.86 0.21 -78.58 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 0.94 Total: 12.07 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: 6.39 Total: 14.70 kcal Atomic # 7 Polarization: -120.57 SS G_CDS: -9.11 Total: -129.68 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.05 Total: -25.65 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 2.03 Total: 49.96 kcal Total: -78.79 0.21 -78.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085669262.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.809 kcal (2) G-P(sol) polarization free energy of solvation -78.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds