Wall clock time and date at job start Fri Apr 10 2020 18:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99498 * 2 1 4 4 H 1.48501 * 109.47356 * 269.99816 * 3 2 1 5 5 H 1.48501 * 109.47215 * 30.00333 * 3 2 1 6 6 H 1.48496 * 109.46783 * 149.99991 * 3 2 1 7 7 C 1.38802 * 120.00448 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00328 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00151 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00473 * 180.02562 * 9 7 2 11 11 H 1.09003 * 112.84469 * 336.19950 * 10 9 7 12 12 C 1.54049 * 113.61109 * 107.50623 * 10 9 7 13 13 C 1.53786 * 86.98426 * 89.11993 * 12 10 9 14 14 H 1.09002 * 113.61357 * 270.83585 * 13 12 10 15 15 C 1.53003 * 113.61503 * 140.01654 * 13 12 10 16 16 N 1.46504 * 109.46983 * 85.86203 * 15 13 12 17 17 C 1.34775 * 120.00207 * 179.97438 * 16 15 13 18 18 O 1.21278 * 119.99540 * 0.02562 * 17 16 15 19 19 C 1.51489 * 120.00253 * 180.02562 * 17 16 15 20 20 C 1.52455 * 108.86685 * 299.21369 * 19 17 16 21 21 C 1.52112 * 112.63092 * 188.73770 * 20 19 17 22 22 C 1.52182 * 112.85782 * 44.69593 * 21 20 19 23 23 N 1.45774 * 112.65290 * 314.15707 * 22 21 20 24 24 C 1.45916 * 113.89001 * 288.59722 * 23 22 21 25 25 C 1.52316 * 112.11529 * 70.03379 * 24 23 22 26 26 C 1.52184 * 112.45313 * 47.60163 * 25 24 23 27 27 C 1.46458 * 112.18586 * 56.97060 * 23 22 21 28 28 C 1.53781 * 87.17350 * 25.42668 * 13 12 10 29 29 H 0.96995 * 120.00753 * 0.02562 * 1 2 3 30 30 H 0.96999 * 119.99812 * 0.02562 * 9 7 2 31 31 H 1.08992 * 113.69868 * 334.60103 * 12 10 9 32 32 H 1.09000 * 113.61076 * 203.61862 * 12 10 9 33 33 H 1.09000 * 109.47107 * 205.86243 * 15 13 12 34 34 H 1.08997 * 109.47112 * 325.86394 * 15 13 12 35 35 H 0.96999 * 119.99647 * 0.02562 * 16 15 13 36 36 H 1.09705 * 109.05431 * 310.24688 * 20 19 17 37 37 H 1.09717 * 109.02961 * 67.32823 * 20 19 17 38 38 H 1.08755 * 110.89880 * 279.63950 * 21 20 19 39 39 H 1.10630 * 107.94132 * 163.75203 * 21 20 19 40 40 H 1.09711 * 109.04745 * 192.79018 * 22 21 20 41 41 H 1.09692 * 109.14863 * 75.67563 * 22 21 20 42 42 H 1.09622 * 109.22095 * 191.06903 * 24 23 22 43 43 H 1.09557 * 109.34691 * 308.74224 * 24 23 22 44 44 H 1.10500 * 107.98243 * 166.80650 * 25 24 23 45 45 H 1.08688 * 110.72871 * 282.92995 * 25 24 23 46 46 H 1.09676 * 109.24927 * 192.98665 * 26 25 24 47 47 H 1.09703 * 109.19074 * 75.59907 * 26 25 24 48 48 H 1.08887 * 109.94866 * 175.93699 * 27 23 22 49 49 H 1.08905 * 109.90126 * 54.95246 * 27 23 22 50 50 H 1.08999 * 113.61567 * 89.07405 * 28 13 12 51 51 H 1.09000 * 113.61379 * 219.89528 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4474 2.6527 0.7001 6 1 3.5476 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 3.0658 -3.5636 -0.4059 12 6 1.9990 -4.4033 1.3456 13 6 0.7207 -5.0791 0.8220 14 1 -0.1901 -4.5240 1.0469 15 6 0.6180 -6.5617 1.1858 16 7 0.0196 -6.6977 2.5161 17 6 -0.1707 -7.9216 3.0476 18 8 0.1540 -8.9102 2.4246 19 6 -0.7900 -8.0623 4.4229 20 6 0.1025 -7.3595 5.4397 21 6 -0.3237 -7.6258 6.8754 22 6 -0.6483 -9.0900 7.1338 23 7 -1.4874 -9.6712 6.0931 24 6 -2.8653 -9.1914 6.1084 25 6 -2.9706 -7.7359 5.6722 26 6 -2.1876 -7.4527 4.3984 27 6 -0.8828 -9.5521 4.7645 28 6 1.2604 -4.8287 -0.5960 29 1 -0.4851 0.8399 -0.0004 30 1 0.3557 -2.3881 -0.0005 31 1 1.8286 -3.7505 2.2016 32 1 2.8275 -5.0951 1.4979 33 1 -0.0057 -7.0733 0.4528 34 1 1.6138 -7.0050 1.1883 35 1 -0.2404 -5.9070 3.0141 36 1 1.1375 -7.6957 5.3006 37 1 0.0787 -6.2791 5.2502 38 1 -1.1590 -6.9887 7.1566 39 1 0.5158 -7.3430 7.5381 40 1 -1.1601 -9.1781 8.1002 41 1 0.2869 -9.6590 7.2037 42 1 -3.4709 -9.8116 5.4372 43 1 -3.2747 -9.2956 7.1192 44 1 -4.0355 -7.5143 5.4774 45 1 -2.6603 -7.0707 6.4738 46 1 -2.1036 -6.3681 4.2592 47 1 -2.7386 -7.8551 3.5394 48 1 -1.5031 -10.0593 4.0272 49 1 0.1149 -9.9888 4.7707 50 1 1.8873 -5.6365 -0.9736 51 1 0.4937 -4.5203 -1.3069 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086399765.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:24 Heat of formation + Delta-G solvation = -16.357202 kcal Electronic energy + Delta-G solvation = -28072.470099 eV Core-core repulsion = 24392.510871 eV Total energy + Delta-G solvation = -3679.959228 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.37298 -39.23889 -38.31472 -34.75420 -33.80700 -33.43895 -33.06666 -31.09652 -30.16901 -27.46752 -26.74462 -25.09503 -24.40805 -23.71169 -23.25189 -21.82397 -21.68552 -20.48499 -18.83378 -18.39063 -17.53797 -17.07740 -16.22769 -15.97403 -15.43114 -15.33855 -14.98673 -14.77945 -14.51939 -14.35200 -14.00015 -13.78023 -13.65712 -13.27390 -13.21047 -12.91064 -12.86943 -12.70216 -12.25732 -11.95400 -11.88741 -11.75528 -11.64982 -11.41747 -11.36985 -11.21739 -11.06826 -10.93772 -10.87941 -10.51592 -10.20431 -10.15833 -10.07179 -9.73017 -9.69138 -9.45462 -9.00181 -8.91302 -8.37153 -7.04024 -5.84571 -3.13723 2.60028 3.13940 3.38966 3.44452 3.45823 3.69938 4.25346 4.32499 4.33205 4.52308 4.59479 4.65373 4.80101 4.80849 4.85988 5.02938 5.05651 5.06318 5.14032 5.20284 5.20415 5.34967 5.41708 5.43698 5.53144 5.57956 5.59656 5.62735 5.67744 5.71299 5.73152 5.74154 5.82303 5.84697 5.93276 5.97256 6.03453 6.08330 6.18182 6.33833 6.41613 6.56209 6.70438 6.84016 6.86751 6.98507 7.00526 7.49831 7.65388 8.19492 8.34624 9.45320 10.02706 10.36916 11.37868 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.019164 B = 0.002510 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.697287 B =11151.981181 C =11791.822829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.168 3.832 11 H 0.062 0.938 12 C -0.168 4.168 13 C -0.119 4.119 14 H 0.092 0.908 15 C 0.130 3.870 16 N -0.721 5.721 17 C 0.521 3.479 18 O -0.544 6.544 19 C -0.104 4.104 20 C -0.102 4.102 21 C -0.151 4.151 22 C 0.066 3.934 23 N -0.546 5.546 24 C 0.065 3.935 25 C -0.152 4.152 26 C -0.102 4.102 27 C 0.092 3.908 28 C -0.148 4.148 29 H 0.256 0.744 30 H 0.385 0.615 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.401 0.599 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.064 0.936 45 H 0.070 0.930 46 H 0.067 0.933 47 H 0.066 0.934 48 H 0.083 0.917 49 H 0.083 0.917 50 H 0.077 0.923 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.480 -18.676 13.815 23.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.344 5.344 10 C 0.055 3.945 11 H 0.080 0.920 12 C -0.209 4.209 13 C -0.138 4.138 14 H 0.110 0.890 15 C 0.007 3.993 16 N -0.372 5.372 17 C 0.306 3.694 18 O -0.421 6.421 19 C -0.109 4.109 20 C -0.140 4.140 21 C -0.190 4.190 22 C -0.062 4.062 23 N -0.266 5.266 24 C -0.063 4.063 25 C -0.191 4.191 26 C -0.140 4.140 27 C -0.036 4.036 28 C -0.187 4.187 29 H 0.066 0.934 30 H 0.219 0.781 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.235 0.765 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.088 0.912 46 H 0.086 0.914 47 H 0.084 0.916 48 H 0.101 0.899 49 H 0.101 0.899 50 H 0.095 0.905 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.152 -19.676 13.460 24.198 hybrid contribution -0.004 2.370 0.052 2.371 sum -4.156 -17.306 13.512 22.346 Atomic orbital electron populations 1.69654 1.05144 1.25813 1.57480 1.24761 0.95543 0.97800 1.02765 0.86171 0.78663 0.83659 0.77588 1.21623 1.21751 1.20696 1.19289 0.91125 0.83964 1.42962 0.90994 1.42171 1.05675 0.99447 1.87122 1.21103 0.95093 0.85574 0.92691 0.91961 1.23923 0.95678 0.99610 1.01721 1.22704 0.99506 0.92970 0.98629 0.89007 1.21481 0.97994 0.96976 0.82850 1.46110 1.63232 1.08148 1.19670 1.20690 0.78162 0.83206 0.87364 1.90684 1.51324 1.37563 1.62546 1.21295 0.96255 1.00589 0.92786 1.21276 0.98717 1.00421 0.93544 1.21973 1.02424 0.98513 0.96112 1.21759 0.97646 0.92413 0.94413 1.60265 1.02320 1.59147 1.04835 1.21809 0.89255 0.93274 1.01962 1.22005 1.00670 0.98649 0.97804 1.21297 0.93312 1.00940 0.98446 1.21775 1.01034 0.91453 0.89361 1.23437 1.00493 0.99699 0.95112 0.93425 0.78131 0.91588 0.91442 0.91907 0.91638 0.76484 0.91540 0.91405 0.91231 0.91745 0.90938 0.90889 0.90868 0.90862 0.91695 0.91179 0.91411 0.91554 0.89856 0.89886 0.90468 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.57 13.06 55.49 0.72 -26.85 16 2 C -0.01 -0.36 5.50 -17.44 -0.10 -0.45 16 3 Si 0.91 22.00 29.55 -169.99 -5.02 16.97 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.24 -6.59 9.97 -15.06 -0.15 -6.74 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.71 -17.18 5.31 -52.50 -0.28 -17.45 16 10 C 0.17 3.23 4.57 -66.98 -0.31 2.92 16 11 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 12 C -0.17 -2.75 7.45 -25.77 -0.19 -2.94 16 13 C -0.12 -1.76 3.62 -89.80 -0.33 -2.08 16 14 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 15 C 0.13 1.74 5.50 -4.04 -0.02 1.71 16 16 N -0.72 -8.71 5.36 -60.00 -0.32 -9.03 16 17 C 0.52 6.64 6.35 -10.60 -0.07 6.58 16 18 O -0.54 -8.83 15.92 5.56 0.09 -8.74 16 19 C -0.10 -1.02 0.57 -155.75 -0.09 -1.11 16 20 C -0.10 -0.90 4.51 -27.46 -0.12 -1.02 16 21 C -0.15 -1.11 5.10 -27.60 -0.14 -1.25 16 22 C 0.07 0.49 5.76 -4.85 -0.03 0.46 16 23 N -0.55 -4.73 4.79 -236.56 -1.13 -5.86 16 24 C 0.07 0.48 5.77 -4.71 -0.03 0.46 16 25 C -0.15 -1.11 5.15 -27.50 -0.14 -1.25 16 26 C -0.10 -0.90 4.51 -27.41 -0.12 -1.02 16 27 C 0.09 0.94 4.18 -4.00 -0.02 0.93 16 28 C -0.15 -2.34 7.39 -25.92 -0.19 -2.54 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.38 9.90 7.90 -40.82 -0.32 9.58 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.07 1.00 7.92 -51.93 -0.41 0.59 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.91 7.88 -51.93 -0.41 0.50 16 35 H 0.40 4.34 7.58 -40.82 -0.31 4.03 16 36 H 0.07 0.64 8.14 -51.53 -0.42 0.22 16 37 H 0.07 0.59 7.81 -51.52 -0.40 0.19 16 38 H 0.07 0.49 5.74 -52.07 -0.30 0.19 16 39 H 0.06 0.43 8.28 -50.99 -0.42 0.01 16 40 H 0.07 0.46 8.10 -51.53 -0.42 0.04 16 41 H 0.07 0.55 8.20 -51.54 -0.42 0.12 16 42 H 0.07 0.55 8.19 -51.58 -0.42 0.12 16 43 H 0.07 0.46 8.10 -51.61 -0.42 0.05 16 44 H 0.06 0.43 8.27 -51.07 -0.42 0.01 16 45 H 0.07 0.50 5.66 -52.10 -0.29 0.20 16 46 H 0.07 0.58 7.80 -51.55 -0.40 0.18 16 47 H 0.07 0.63 8.14 -51.53 -0.42 0.21 16 48 H 0.08 0.93 8.07 -51.99 -0.42 0.51 16 49 H 0.08 0.93 8.08 -51.98 -0.42 0.51 16 50 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 51 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 385.95 15.07 5.82 5.82 Total: -1.00 -30.56 385.95 -11.30 -41.86 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -9.13 Total: 10.64 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -2.04 Total: -7.36 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: -1.01 Total: -59.20 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.09 Total: -8.74 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.56 -11.30 -41.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086399765.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.505 kcal (2) G-P(sol) polarization free energy of solvation -30.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds