Wall clock time and date at job start Fri Apr 10 2020 18:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99888 * 2 1 4 4 H 1.48499 * 109.47101 * 269.99417 * 3 2 1 5 5 H 1.48498 * 109.47475 * 29.99886 * 3 2 1 6 6 H 1.48503 * 109.46641 * 149.99884 * 3 2 1 7 7 C 1.38814 * 119.99473 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00448 * 0.02562 * 7 2 1 9 9 N 1.36943 * 119.99386 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99355 * 180.02562 * 9 7 2 11 11 H 1.08993 * 110.82277 * 31.65936 * 10 9 7 12 12 C 1.55238 * 110.89672 * 268.21055 * 10 9 7 13 13 C 1.54266 * 104.23333 * 203.79695 * 12 10 9 14 14 C 1.53869 * 106.59800 * 23.61579 * 13 12 10 15 15 H 1.09004 * 110.06815 * 240.69431 * 14 13 12 16 16 C 1.53004 * 110.03661 * 119.28399 * 14 13 12 17 17 N 1.46498 * 109.46721 * 67.83039 * 16 14 13 18 18 C 1.34783 * 119.99829 * 180.02562 * 17 16 14 19 19 O 1.21281 * 119.99679 * 0.02562 * 18 17 16 20 20 C 1.50695 * 120.00226 * 179.97438 * 18 17 16 21 21 H 1.09004 * 109.57505 * 60.00151 * 20 18 17 22 22 C 1.53137 * 109.58107 * 299.73820 * 20 18 17 23 23 N 1.47182 * 109.22442 * 240.25476 * 22 20 18 24 24 C 1.46945 * 111.12976 * 61.89936 * 23 22 20 25 25 C 1.53118 * 109.35388 * 298.03633 * 24 23 22 26 26 C 1.53383 * 109.57634 * 180.26063 * 20 18 17 27 27 C 1.53399 * 108.59514 * 178.75767 * 26 20 18 28 28 C 1.46939 * 111.01563 * 297.87971 * 23 22 20 29 29 C 1.54266 * 106.60031 * 359.97438 * 14 13 12 30 30 H 0.96995 * 120.00082 * 0.02562 * 1 2 3 31 31 H 0.96997 * 119.99864 * 359.97438 * 9 7 2 32 32 H 1.09005 * 110.46917 * 85.10725 * 12 10 9 33 33 H 1.09007 * 110.58541 * 322.54645 * 12 10 9 34 34 H 1.08999 * 110.03060 * 264.32313 * 13 12 10 35 35 H 1.09003 * 110.02805 * 142.89578 * 13 12 10 36 36 H 1.08994 * 109.47141 * 187.82732 * 16 14 13 37 37 H 1.08999 * 109.46772 * 307.83234 * 16 14 13 38 38 H 0.96999 * 120.00478 * 0.02562 * 17 16 14 39 39 H 1.09006 * 109.48363 * 0.17853 * 22 20 18 40 40 H 1.09000 * 109.49055 * 120.23912 * 22 20 18 41 41 H 1.09001 * 109.48501 * 178.06819 * 24 23 22 42 42 H 1.09002 * 109.48914 * 58.00342 * 24 23 22 43 43 H 1.09001 * 109.57360 * 240.14160 * 25 24 23 44 44 H 1.08995 * 109.68480 * 119.82299 * 25 24 23 45 45 H 1.08995 * 110.11740 * 300.19546 * 26 20 18 46 46 H 1.09001 * 109.57449 * 60.80809 * 27 26 20 47 47 H 1.09004 * 109.57406 * 181.18485 * 27 26 20 48 48 H 1.08995 * 109.49350 * 181.98856 * 28 23 22 49 49 H 1.09001 * 109.49123 * 302.03348 * 28 23 22 50 50 H 1.09002 * 110.48629 * 95.07240 * 29 14 13 51 51 H 1.08998 * 110.48744 * 217.58143 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1120 -2.4710 0.0011 11 1 3.5549 -3.2399 -0.5340 12 6 4.4274 -2.9282 1.4507 13 6 5.6528 -3.8530 1.2985 14 6 6.3497 -3.4471 -0.0119 15 1 6.3670 -4.2899 -0.7030 16 6 7.7769 -2.9774 0.2771 17 7 8.5822 -4.1135 0.7320 18 6 9.8805 -3.9360 1.0474 19 8 10.3819 -2.8355 0.9551 20 6 10.7087 -5.1045 1.5159 21 1 10.7297 -5.8712 0.7414 22 6 10.1000 -5.6846 2.7958 23 7 11.0863 -5.5962 3.8848 24 6 11.4407 -4.1982 4.1663 25 6 12.0851 -3.5779 2.9234 26 6 12.1383 -4.6348 1.8131 27 6 12.9521 -5.8335 2.3172 28 6 12.2836 -6.3905 3.5771 29 6 5.5232 -2.2903 -0.6107 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3622 0.0007 32 1 3.5842 -3.4780 1.8690 33 1 4.6719 -2.0711 2.0783 34 1 5.3312 -4.8930 1.2439 35 1 6.3313 -3.7152 2.1404 36 1 8.2139 -2.5629 -0.6313 37 1 7.7574 -2.2120 1.0529 38 1 8.1810 -4.9936 0.8062 39 1 9.2090 -5.1170 3.0643 40 1 9.8309 -6.7278 2.6301 41 1 12.1447 -4.1619 4.9976 42 1 10.5411 -3.6403 4.4264 43 1 13.0961 -3.2481 3.1624 44 1 11.4927 -2.7264 2.5890 45 1 12.5885 -4.2124 0.9148 46 1 12.9811 -6.6048 1.5476 47 1 13.9667 -5.5126 2.5535 48 1 12.9808 -6.3362 4.4131 49 1 11.9979 -7.4289 3.4088 50 1 5.9450 -1.3288 -0.3181 51 1 5.4821 -2.3731 -1.6967 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086697636.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:30 Heat of formation + Delta-G solvation = -31.323393 kcal Electronic energy + Delta-G solvation = -27868.455517 eV Core-core repulsion = 24187.847306 eV Total energy + Delta-G solvation = -3680.608210 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.58963 -39.31304 -38.11335 -35.11978 -33.54585 -32.57987 -31.90705 -31.26099 -30.93098 -29.07789 -27.60300 -25.05552 -23.72268 -23.30932 -23.22546 -22.70529 -20.80098 -19.91772 -19.47340 -17.94061 -17.60769 -17.51097 -16.87124 -16.75222 -16.08160 -15.75180 -15.26178 -14.91461 -14.77064 -14.15584 -13.58500 -13.41974 -13.35379 -13.14917 -13.01201 -12.78575 -12.60419 -12.55706 -12.51996 -12.40701 -12.29635 -12.11419 -11.85113 -11.40461 -11.36101 -11.00245 -10.85896 -10.76135 -10.63230 -10.58771 -10.55449 -10.40186 -10.25890 -9.95312 -9.72439 -9.58561 -9.19460 -8.90905 -8.60926 -7.26344 -5.77753 -3.13134 2.43173 2.96105 3.37811 3.41045 3.45644 3.57012 4.09298 4.22184 4.44594 4.58772 4.61411 4.66273 4.74480 4.77595 4.79828 4.82779 4.90322 4.91613 4.99691 5.06616 5.19985 5.36228 5.40205 5.45765 5.46962 5.54098 5.56940 5.62095 5.62356 5.69544 5.74833 5.78612 5.80644 5.82977 5.92295 5.95693 6.05522 6.12985 6.20694 6.25970 6.33682 6.40974 6.59479 6.65227 6.67438 6.78129 6.96726 7.30870 7.99090 8.04171 8.41929 9.20323 9.93136 10.12796 11.40572 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.027431 B = 0.002295 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.513393 B =12195.657786 C =12373.046713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.244 4.244 8 H 0.090 0.910 9 N -0.744 5.744 10 C 0.183 3.817 11 H 0.065 0.935 12 C -0.144 4.144 13 C -0.120 4.120 14 C -0.100 4.100 15 H 0.075 0.925 16 C 0.126 3.874 17 N -0.726 5.726 18 C 0.517 3.483 19 O -0.536 6.536 20 C -0.141 4.141 21 H 0.098 0.902 22 C 0.061 3.939 23 N -0.527 5.527 24 C 0.051 3.949 25 C -0.161 4.161 26 C -0.065 4.065 27 C -0.150 4.150 28 C 0.051 3.949 29 C -0.127 4.127 30 H 0.259 0.741 31 H 0.361 0.639 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.400 0.600 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.061 0.939 44 H 0.095 0.905 45 H 0.083 0.917 46 H 0.066 0.934 47 H 0.069 0.931 48 H 0.076 0.924 49 H 0.076 0.924 50 H 0.066 0.934 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.150 -15.595 4.991 31.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.374 4.374 8 H 0.108 0.892 9 N -0.386 5.386 10 C 0.072 3.928 11 H 0.083 0.917 12 C -0.185 4.185 13 C -0.158 4.158 14 C -0.120 4.120 15 H 0.094 0.906 16 C 0.003 3.997 17 N -0.378 5.378 18 C 0.303 3.697 19 O -0.413 6.413 20 C -0.164 4.164 21 H 0.117 0.883 22 C -0.068 4.068 23 N -0.247 5.247 24 C -0.077 4.077 25 C -0.200 4.200 26 C -0.085 4.085 27 C -0.190 4.190 28 C -0.077 4.077 29 C -0.166 4.166 30 H 0.069 0.931 31 H 0.194 0.806 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.234 0.766 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.080 0.920 44 H 0.113 0.887 45 H 0.101 0.899 46 H 0.084 0.916 47 H 0.087 0.913 48 H 0.095 0.905 49 H 0.095 0.905 50 H 0.084 0.916 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 26.997 -15.040 5.372 31.368 hybrid contribution 0.722 1.158 -0.765 1.565 sum 27.719 -13.882 4.607 31.342 Atomic orbital electron populations 1.69701 1.05106 1.25833 1.57533 1.24685 0.95252 0.97241 1.02038 0.86554 0.79244 0.84977 0.77793 1.21079 1.21752 1.20286 1.19095 0.80612 0.94695 1.42973 0.89201 1.42742 1.04034 1.02006 1.89768 1.21180 0.89805 0.89168 0.92606 0.91709 1.23099 0.96010 0.98525 1.00856 1.22201 0.97839 0.99637 0.96112 1.21951 0.92829 0.99173 0.98012 0.90648 1.21552 0.90005 0.88330 0.99791 1.46093 1.10565 1.12963 1.68136 1.20517 0.82088 0.90153 0.76932 1.90646 1.71534 1.26500 1.52650 1.22126 0.96488 0.97205 1.00584 0.88347 1.22306 0.95472 1.01684 0.87361 1.62561 1.12027 1.10966 1.39138 1.22237 1.00617 0.87765 0.97115 1.22482 1.02169 0.99892 0.95476 1.20887 0.92797 0.95452 0.99331 1.22299 0.99794 0.97872 0.98993 1.22228 0.91573 0.97418 0.96515 1.22642 0.96608 0.97286 1.00035 0.93066 0.80573 0.92103 0.92039 0.92172 0.92328 0.91644 0.91292 0.76583 0.89943 0.89605 0.90665 0.90734 0.91977 0.88686 0.89886 0.91555 0.91251 0.90526 0.90526 0.91566 0.91513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.31 13.97 55.49 0.78 -28.54 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 3 Si 0.88 22.19 27.74 -169.99 -4.71 17.48 16 4 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.28 -6.56 6.52 56.52 0.37 -6.20 16 7 C -0.24 -6.82 10.44 -15.06 -0.16 -6.98 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 9 N -0.74 -17.37 5.04 -51.33 -0.26 -17.63 16 10 C 0.18 3.35 3.58 -65.76 -0.24 3.12 16 11 H 0.06 1.23 8.09 -51.93 -0.42 0.81 16 12 C -0.14 -2.35 6.53 -24.88 -0.16 -2.52 16 13 C -0.12 -1.42 6.19 -25.62 -0.16 -1.58 16 14 C -0.10 -1.13 2.96 -89.50 -0.27 -1.40 16 15 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 16 C 0.13 1.42 4.69 -4.04 -0.02 1.40 16 17 N -0.73 -6.66 5.10 -60.30 -0.31 -6.97 16 18 C 0.52 5.44 6.60 -10.98 -0.07 5.37 16 19 O -0.54 -7.68 13.72 5.56 0.08 -7.61 16 20 C -0.14 -1.09 2.59 -91.50 -0.24 -1.32 16 21 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 22 C 0.06 0.43 5.64 -3.60 -0.02 0.41 16 23 N -0.53 -4.15 5.22 -234.07 -1.22 -5.37 16 24 C 0.05 0.43 6.10 -3.74 -0.02 0.41 16 25 C -0.16 -1.49 5.43 -26.47 -0.14 -1.63 16 26 C -0.07 -0.54 2.60 -90.01 -0.23 -0.77 16 27 C -0.15 -0.93 5.75 -26.46 -0.15 -1.09 16 28 C 0.05 0.32 6.09 -3.74 -0.02 0.30 16 29 C -0.13 -1.84 5.97 -25.08 -0.15 -1.99 16 30 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 31 H 0.36 8.35 5.62 -40.82 -0.23 8.12 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.66 7.61 -51.93 -0.40 0.27 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.40 2.70 8.26 -40.82 -0.34 2.37 16 39 H 0.08 0.65 7.46 -51.93 -0.39 0.27 16 40 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.09 1.14 5.57 -51.93 -0.29 0.85 16 45 H 0.08 0.78 8.11 -51.93 -0.42 0.36 16 46 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 49 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.07 1.00 7.73 -51.93 -0.40 0.60 16 51 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 383.28 15.07 5.78 5.78 Total: -1.00 -32.61 383.28 -11.26 -43.87 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -9.24 Total: 7.27 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -2.15 Total: -8.27 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: -1.01 Total: -58.51 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: 0.08 Total: -7.61 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.71 Total: 17.48 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.61 -11.26 -43.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086697636.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.544 kcal (2) G-P(sol) polarization free energy of solvation -32.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds