Wall clock time and date at job start Fri Apr 10 2020 18:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99888 * 2 1 4 4 H 1.48499 * 109.47101 * 269.99417 * 3 2 1 5 5 H 1.48498 * 109.47475 * 29.99886 * 3 2 1 6 6 H 1.48503 * 109.46641 * 149.99884 * 3 2 1 7 7 C 1.38814 * 119.99473 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00448 * 0.02562 * 7 2 1 9 9 N 1.36943 * 119.99386 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99355 * 180.02562 * 9 7 2 11 11 H 1.08993 * 110.82277 * 31.65936 * 10 9 7 12 12 C 1.55238 * 110.89672 * 268.21055 * 10 9 7 13 13 C 1.54266 * 104.23333 * 203.79695 * 12 10 9 14 14 C 1.53869 * 106.59800 * 23.61579 * 13 12 10 15 15 H 1.09004 * 110.06815 * 240.69431 * 14 13 12 16 16 C 1.53004 * 110.03661 * 119.28399 * 14 13 12 17 17 N 1.46498 * 109.46721 * 67.83039 * 16 14 13 18 18 C 1.34783 * 119.99829 * 180.02562 * 17 16 14 19 19 O 1.21281 * 119.99679 * 0.02562 * 18 17 16 20 20 C 1.50695 * 120.00226 * 179.97438 * 18 17 16 21 21 H 1.09004 * 109.57505 * 60.00151 * 20 18 17 22 22 C 1.53137 * 109.58107 * 299.73820 * 20 18 17 23 23 N 1.47182 * 109.22442 * 240.25476 * 22 20 18 24 24 C 1.46945 * 111.12976 * 61.89936 * 23 22 20 25 25 C 1.53118 * 109.35388 * 298.03633 * 24 23 22 26 26 C 1.53383 * 109.57634 * 180.26063 * 20 18 17 27 27 C 1.53399 * 108.59514 * 178.75767 * 26 20 18 28 28 C 1.46939 * 111.01563 * 297.87971 * 23 22 20 29 29 C 1.54266 * 106.60031 * 359.97438 * 14 13 12 30 30 H 0.96995 * 120.00082 * 0.02562 * 1 2 3 31 31 H 0.96997 * 119.99864 * 359.97438 * 9 7 2 32 32 H 1.09005 * 110.46917 * 85.10725 * 12 10 9 33 33 H 1.09007 * 110.58541 * 322.54645 * 12 10 9 34 34 H 1.08999 * 110.03060 * 264.32313 * 13 12 10 35 35 H 1.09003 * 110.02805 * 142.89578 * 13 12 10 36 36 H 1.08994 * 109.47141 * 187.82732 * 16 14 13 37 37 H 1.08999 * 109.46772 * 307.83234 * 16 14 13 38 38 H 0.96999 * 120.00478 * 0.02562 * 17 16 14 39 39 H 1.09006 * 109.48363 * 0.17853 * 22 20 18 40 40 H 1.09000 * 109.49055 * 120.23912 * 22 20 18 41 41 H 1.09001 * 109.48501 * 178.06819 * 24 23 22 42 42 H 1.09002 * 109.48914 * 58.00342 * 24 23 22 43 43 H 1.09001 * 109.57360 * 240.14160 * 25 24 23 44 44 H 1.08995 * 109.68480 * 119.82299 * 25 24 23 45 45 H 1.08995 * 110.11740 * 300.19546 * 26 20 18 46 46 H 1.09001 * 109.57449 * 60.80809 * 27 26 20 47 47 H 1.09004 * 109.57406 * 181.18485 * 27 26 20 48 48 H 1.08995 * 109.49350 * 181.98856 * 28 23 22 49 49 H 1.09001 * 109.49123 * 302.03348 * 28 23 22 50 50 H 1.09002 * 110.48629 * 95.07240 * 29 14 13 51 51 H 1.08998 * 110.48744 * 217.58143 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1120 -2.4710 0.0011 11 1 3.5549 -3.2399 -0.5340 12 6 4.4274 -2.9282 1.4507 13 6 5.6528 -3.8530 1.2985 14 6 6.3497 -3.4471 -0.0119 15 1 6.3670 -4.2899 -0.7030 16 6 7.7769 -2.9774 0.2771 17 7 8.5822 -4.1135 0.7320 18 6 9.8805 -3.9360 1.0474 19 8 10.3819 -2.8355 0.9551 20 6 10.7087 -5.1045 1.5159 21 1 10.7297 -5.8712 0.7414 22 6 10.1000 -5.6846 2.7958 23 7 11.0863 -5.5962 3.8848 24 6 11.4407 -4.1982 4.1663 25 6 12.0851 -3.5779 2.9234 26 6 12.1383 -4.6348 1.8131 27 6 12.9521 -5.8335 2.3172 28 6 12.2836 -6.3905 3.5771 29 6 5.5232 -2.2903 -0.6107 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3622 0.0007 32 1 3.5842 -3.4780 1.8690 33 1 4.6719 -2.0711 2.0783 34 1 5.3312 -4.8930 1.2439 35 1 6.3313 -3.7152 2.1404 36 1 8.2139 -2.5629 -0.6313 37 1 7.7574 -2.2120 1.0529 38 1 8.1810 -4.9936 0.8062 39 1 9.2090 -5.1170 3.0643 40 1 9.8309 -6.7278 2.6301 41 1 12.1447 -4.1619 4.9976 42 1 10.5411 -3.6403 4.4264 43 1 13.0961 -3.2481 3.1624 44 1 11.4927 -2.7264 2.5890 45 1 12.5885 -4.2124 0.9148 46 1 12.9811 -6.6048 1.5476 47 1 13.9667 -5.5126 2.5535 48 1 12.9808 -6.3362 4.4131 49 1 11.9979 -7.4289 3.4088 50 1 5.9450 -1.3288 -0.3181 51 1 5.4821 -2.3731 -1.6967 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086697636.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:29 Heat of formation + Delta-G solvation = -54.429055 kcal Electronic energy + Delta-G solvation = -27869.457453 eV Core-core repulsion = 24187.847306 eV Total energy + Delta-G solvation = -3681.610147 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.24630 -40.20639 -39.23861 -36.43516 -35.06370 -33.26851 -33.09185 -32.32197 -31.83978 -30.19500 -29.00101 -26.13005 -24.72214 -24.31591 -23.91195 -23.81594 -21.81147 -21.18608 -20.59149 -19.58136 -18.63581 -18.21171 -17.54251 -17.41257 -17.01805 -16.76057 -16.50367 -16.19776 -15.80804 -15.62550 -14.83610 -14.42873 -14.40747 -14.20079 -14.09142 -13.93454 -13.76898 -13.44747 -13.14269 -13.12671 -13.11712 -13.06678 -12.91049 -12.69184 -12.48829 -12.34305 -12.12626 -12.00597 -11.96341 -11.85464 -11.70770 -11.52083 -11.35401 -11.25925 -11.10257 -10.94987 -10.54930 -10.04658 -9.28586 -9.19996 -8.03194 -5.35512 1.36559 1.38893 1.46164 1.63696 2.18570 2.47103 3.01894 3.27365 3.46440 3.53859 3.64734 3.69006 3.78500 3.85318 4.04600 4.08563 4.13752 4.22588 4.29235 4.33069 4.37264 4.40475 4.47026 4.49023 4.60102 4.63143 4.64534 4.73537 4.78057 4.82877 4.89148 4.97562 5.02430 5.05136 5.08680 5.11215 5.15009 5.20067 5.20678 5.21385 5.33814 5.41005 5.49607 5.54532 5.56981 5.77912 6.07232 6.14498 6.22333 6.58548 7.07837 7.28534 7.86187 8.03449 9.18419 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.027431 B = 0.002295 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.513393 B =12195.657786 C =12373.046713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.067 4.067 3 Si 0.953 3.047 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.256 1.256 7 C -0.227 4.227 8 H 0.058 0.942 9 N -0.751 5.751 10 C 0.167 3.833 11 H 0.056 0.944 12 C -0.142 4.142 13 C -0.107 4.107 14 C -0.084 4.084 15 H 0.103 0.897 16 C 0.134 3.866 17 N -0.714 5.714 18 C 0.513 3.487 19 O -0.580 6.580 20 C -0.132 4.132 21 H 0.124 0.876 22 C 0.062 3.938 23 N -0.535 5.535 24 C 0.054 3.946 25 C -0.159 4.159 26 C -0.068 4.068 27 C -0.142 4.142 28 C 0.051 3.949 29 C -0.120 4.120 30 H 0.257 0.743 31 H 0.364 0.636 32 H 0.046 0.954 33 H 0.045 0.955 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.049 0.951 38 H 0.416 0.584 39 H 0.072 0.928 40 H 0.112 0.888 41 H 0.083 0.917 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.066 0.934 46 H 0.081 0.919 47 H 0.070 0.930 48 H 0.080 0.920 49 H 0.093 0.907 50 H 0.060 0.940 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.850 -17.795 5.011 35.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.258 4.258 3 Si 0.781 3.219 4 H -0.204 1.204 5 H -0.224 1.224 6 H -0.180 1.180 7 C -0.358 4.358 8 H 0.076 0.924 9 N -0.393 5.393 10 C 0.059 3.941 11 H 0.074 0.926 12 C -0.182 4.182 13 C -0.145 4.145 14 C -0.103 4.103 15 H 0.121 0.879 16 C 0.010 3.990 17 N -0.366 5.366 18 C 0.301 3.699 19 O -0.460 6.460 20 C -0.155 4.155 21 H 0.142 0.858 22 C -0.067 4.067 23 N -0.255 5.255 24 C -0.074 4.074 25 C -0.198 4.198 26 C -0.088 4.088 27 C -0.181 4.181 28 C -0.077 4.077 29 C -0.159 4.159 30 H 0.066 0.934 31 H 0.197 0.803 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.253 0.747 39 H 0.091 0.909 40 H 0.130 0.870 41 H 0.101 0.899 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.100 0.900 47 H 0.089 0.911 48 H 0.098 0.902 49 H 0.111 0.889 50 H 0.079 0.921 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 29.744 -17.314 5.398 34.837 hybrid contribution -0.127 1.766 -0.760 1.927 sum 29.617 -15.547 4.638 33.770 Atomic orbital electron populations 1.69878 1.07035 1.26562 1.60025 1.25490 0.96118 1.01152 1.03029 0.85433 0.78517 0.79899 0.78068 1.20404 1.22383 1.18033 1.19070 0.82701 0.93380 1.40639 0.92365 1.42791 1.02475 1.04064 1.89920 1.21496 0.91330 0.86959 0.94326 0.92552 1.22959 0.97732 0.98807 0.98704 1.22124 0.95778 0.99777 0.96790 1.21821 0.91970 0.98579 0.97933 0.87904 1.21307 0.90114 0.88613 0.98919 1.45933 1.10102 1.13145 1.67391 1.21088 0.82378 0.90371 0.76104 1.90643 1.72434 1.28430 1.54445 1.22142 0.95369 0.96362 1.01621 0.85799 1.22381 0.94830 1.02943 0.86530 1.62578 1.12957 1.10280 1.39656 1.22159 1.00020 0.88332 0.96895 1.22405 1.01657 0.99379 0.96394 1.20888 0.93661 0.96009 0.98250 1.22252 0.99390 0.97117 0.99384 1.22319 0.91000 0.97866 0.96549 1.22545 0.94309 0.98533 1.00498 0.93423 0.80320 0.93504 0.93643 0.89704 0.91296 0.92289 0.93269 0.74726 0.90941 0.86974 0.89882 0.92216 0.91850 0.91830 0.91521 0.90010 0.91084 0.90180 0.88862 0.92122 0.90702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.66 13.97 21.65 0.30 -63.36 16 2 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 3 Si 0.95 46.36 27.74 68.60 1.90 48.26 16 4 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 5 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 6 H -0.26 -11.36 6.52 99.48 0.65 -10.72 16 7 C -0.23 -12.96 10.44 84.03 0.88 -12.08 16 8 H 0.06 3.63 8.06 -2.91 -0.02 3.60 16 9 N -0.75 -34.97 5.04 -316.31 -1.59 -36.57 16 10 C 0.17 6.02 3.58 46.40 0.17 6.19 16 11 H 0.06 2.12 8.09 -2.39 -0.02 2.10 16 12 C -0.14 -4.50 6.53 31.79 0.21 -4.29 16 13 C -0.11 -2.23 6.19 31.32 0.19 -2.04 16 14 C -0.08 -1.64 2.96 -10.07 -0.03 -1.67 16 15 H 0.10 1.56 8.14 -2.39 -0.02 1.55 16 16 C 0.13 2.74 4.69 86.38 0.40 3.14 16 17 N -0.71 -11.24 5.10 -463.06 -2.36 -13.60 16 18 C 0.51 10.02 6.60 87.65 0.58 10.60 16 19 O -0.58 -16.64 13.72 -3.03 -0.04 -16.68 16 20 C -0.13 -1.69 2.59 -11.37 -0.03 -1.72 16 21 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 22 C 0.06 0.69 5.64 86.29 0.49 1.18 16 23 N -0.53 -7.09 5.22 -894.46 -4.67 -11.76 16 24 C 0.05 0.87 6.10 86.33 0.53 1.40 16 25 C -0.16 -2.91 5.43 30.76 0.17 -2.74 16 26 C -0.07 -1.03 2.60 -10.40 -0.03 -1.06 16 27 C -0.14 -1.37 5.75 30.77 0.18 -1.19 16 28 C 0.05 0.47 6.09 86.34 0.53 0.99 16 29 C -0.12 -3.27 5.97 31.66 0.19 -3.08 16 30 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 31 H 0.36 16.48 5.62 -92.71 -0.52 15.96 16 32 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 34 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.07 1.35 7.61 -2.39 -0.02 1.34 16 36 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.42 3.97 8.26 -92.71 -0.77 3.20 16 39 H 0.07 0.96 7.46 -2.38 -0.02 0.95 16 40 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.06 1.59 5.57 -2.39 -0.01 1.58 16 45 H 0.07 1.22 8.11 -2.39 -0.02 1.20 16 46 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.09 0.59 8.14 -2.39 -0.02 0.58 16 50 H 0.06 1.74 7.73 -2.39 -0.02 1.72 16 51 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -74.03 383.28 -2.02 -76.05 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: -0.44 Total: 27.55 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: 4.88 Total: -9.88 kcal Atomic # 7 Polarization: -116.97 SS G_CDS: -8.32 Total: -125.29 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.04 Total: -16.68 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 1.90 Total: 48.26 kcal Total: -74.03 -2.02 -76.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086697636.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.617 kcal (2) G-P(sol) polarization free energy of solvation -74.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds