Wall clock time and date at job start Fri Apr 10 2020 18:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52991 * 109.47141 * 2 1 4 4 H 1.09002 * 109.87598 * 55.48353 * 3 2 1 5 5 C 1.54324 * 109.88788 * 294.46705 * 3 2 1 6 6 H 1.09001 * 110.72032 * 336.75337 * 5 3 2 7 7 N 1.46498 * 110.71956 * 100.02626 * 5 3 2 8 8 C 1.34778 * 119.99752 * 205.00427 * 7 5 3 9 9 O 1.21278 * 120.00187 * 359.97438 * 8 7 5 10 10 C 1.50702 * 120.00108 * 179.97438 * 8 7 5 11 11 H 1.08998 * 109.57666 * 59.73628 * 10 8 7 12 12 C 1.53143 * 109.57922 * 299.34134 * 10 8 7 13 13 N 1.46905 * 109.36951 * 240.18483 * 12 10 8 14 14 C 1.46939 * 111.05579 * 298.00324 * 13 12 10 15 15 C 1.53129 * 109.34970 * 61.96686 * 14 13 12 16 16 C 1.53382 * 109.58000 * 179.97438 * 10 8 7 17 17 C 1.53386 * 108.59934 * 60.84826 * 16 10 8 18 18 C 1.46943 * 111.05712 * 62.00577 * 13 12 10 19 19 C 1.55155 * 102.94315 * 218.38965 * 5 3 2 20 20 C 1.54912 * 101.58280 * 35.50212 * 19 5 3 21 21 N 1.47022 * 109.88570 * 176.65644 * 3 2 1 22 22 C 1.36943 * 125.64794 * 298.34292 * 21 3 2 23 23 H 1.08000 * 120.00046 * 345.64864 * 22 21 3 24 24 C 1.38811 * 120.00045 * 165.64675 * 22 21 3 25 25 N 1.31621 * 119.99963 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00113 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46876 * 60.00173 * 26 24 22 28 28 H 1.48496 * 109.47116 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47148 * 300.00269 * 26 24 22 30 30 H 1.09003 * 109.46748 * 185.62821 * 1 2 3 31 31 H 1.08999 * 109.47422 * 65.62780 * 1 2 3 32 32 H 1.08994 * 109.46755 * 305.62387 * 1 2 3 33 33 H 1.08994 * 109.47175 * 120.00847 * 2 1 3 34 34 H 1.09006 * 109.46642 * 240.00455 * 2 1 3 35 35 H 0.96993 * 120.00196 * 24.99795 * 7 5 3 36 36 H 1.09004 * 109.48503 * 0.15604 * 12 10 8 37 37 H 1.09003 * 109.48824 * 120.21041 * 12 10 8 38 38 H 1.09000 * 109.49377 * 302.00293 * 14 13 12 39 39 H 1.09003 * 109.49416 * 181.92337 * 14 13 12 40 40 H 1.09003 * 109.57957 * 240.23970 * 15 14 13 41 41 H 1.09003 * 109.68424 * 119.92127 * 15 14 13 42 42 H 1.09006 * 110.11019 * 299.40926 * 16 10 8 43 43 H 1.09005 * 109.57173 * 178.81222 * 17 16 10 44 44 H 1.08995 * 109.57957 * 299.19458 * 17 16 10 45 45 H 1.08993 * 109.49053 * 58.00617 * 18 13 12 46 46 H 1.08998 * 109.49163 * 178.08036 * 18 13 12 47 47 H 1.09005 * 111.00402 * 153.57808 * 19 5 3 48 48 H 1.09006 * 111.00440 * 277.42231 * 19 5 3 49 49 H 1.08995 * 110.36712 * 81.82647 * 20 19 5 50 50 H 1.09002 * 110.36192 * 204.15314 * 20 19 5 51 51 H 0.96998 * 119.99786 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6159 1.9854 0.8446 5 6 1.6484 2.1377 -1.3209 6 1 1.4777 1.4029 -2.1077 7 7 0.4654 2.9809 -1.1318 8 6 -0.3332 3.2662 -2.1794 9 8 -0.0722 2.8252 -3.2786 10 6 -1.5505 4.1331 -1.9848 11 1 -1.2468 5.1099 -1.6086 12 6 -2.5000 3.4674 -0.9846 13 7 -3.7920 3.2117 -1.6353 14 6 -4.4252 4.4668 -2.0631 15 6 -3.5303 5.1610 -3.0936 16 6 -2.2801 4.3025 -3.3233 17 6 -2.7212 2.9194 -3.8185 18 6 -3.6393 2.2872 -2.7671 19 6 2.8949 3.0045 -1.6403 20 6 4.0432 2.0967 -1.1333 21 7 3.5080 1.4538 0.0806 22 6 4.2546 0.9509 1.1126 23 1 3.7825 0.7113 2.0540 24 6 5.6181 0.7489 0.9488 25 7 6.1934 1.0403 -0.1986 26 14 6.6363 0.0621 2.3563 27 1 6.1182 -1.2771 2.7346 28 1 8.0536 -0.0573 1.9296 29 1 6.5467 0.9755 3.5237 30 1 -0.3633 -1.0228 0.1008 31 1 -0.3634 0.4241 -0.9361 32 1 -0.3632 0.5986 0.8353 33 1 1.8934 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 0.2568 3.3338 -0.2527 36 1 -2.0699 2.5244 -0.6470 37 1 -2.6477 4.1268 -0.1292 38 1 -4.5597 5.1189 -1.2001 39 1 -5.3953 4.2507 -2.5108 40 1 -3.2358 6.1418 -2.7200 41 1 -4.0721 5.2756 -4.0325 42 1 -1.6239 4.7819 -4.0498 43 1 -3.2607 3.0236 -4.7600 44 1 -1.8453 2.2876 -3.9654 45 1 -3.2017 1.3525 -2.4167 46 1 -4.6157 2.0889 -3.2091 47 1 2.9823 3.1833 -2.7120 48 1 2.8683 3.9450 -1.0899 49 1 4.2916 1.3450 -1.8826 50 1 4.9209 2.6955 -0.8899 51 1 7.1462 0.8995 -0.3129 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087574180.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:32 Heat of formation + Delta-G solvation = -31.768099 kcal Electronic energy + Delta-G solvation = -29312.633702 eV Core-core repulsion = 25632.006208 eV Total energy + Delta-G solvation = -3680.627494 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.24516 -40.44824 -38.97436 -35.65313 -34.34947 -33.61114 -33.13959 -32.25051 -31.78968 -30.66202 -28.10082 -26.46803 -24.95506 -23.98359 -23.77547 -23.49981 -22.19617 -21.53901 -21.04743 -18.77801 -18.54100 -18.13871 -17.55069 -17.36448 -17.01948 -16.66104 -16.14573 -15.79942 -15.65697 -15.33815 -15.01008 -14.42382 -14.21291 -13.90237 -13.86669 -13.74138 -13.55293 -13.27479 -13.11855 -13.08150 -13.04038 -12.96657 -12.83722 -12.68240 -12.58455 -12.44931 -12.23456 -12.08088 -12.01218 -12.00218 -11.79803 -11.57238 -11.37718 -11.28278 -11.06620 -10.68900 -10.49708 -9.92338 -9.16309 -8.83628 -7.85571 -5.23778 1.46969 1.49789 1.55888 1.68578 2.15428 2.51789 3.06271 3.34084 3.48931 3.57466 3.70622 3.84710 3.88184 3.92231 4.07724 4.12563 4.19830 4.26796 4.32662 4.35067 4.39169 4.40841 4.44306 4.52512 4.60592 4.65201 4.67768 4.74933 4.85936 4.87539 5.00275 5.01363 5.05533 5.12760 5.15961 5.18613 5.19592 5.23798 5.24852 5.31417 5.43797 5.47104 5.51305 5.57116 5.69411 5.70714 6.11151 6.18581 6.23037 6.63317 7.08620 7.33240 7.76618 8.43759 9.25477 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.027803 B = 0.003098 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.846345 B = 9035.621235 C = 9421.329136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.126 4.126 3 C 0.160 3.840 4 H 0.053 0.947 5 C 0.159 3.841 6 H 0.073 0.927 7 N -0.701 5.701 8 C 0.518 3.482 9 O -0.576 6.576 10 C -0.131 4.131 11 H 0.120 0.880 12 C 0.062 3.938 13 N -0.531 5.531 14 C 0.051 3.949 15 C -0.142 4.142 16 C -0.068 4.068 17 C -0.158 4.158 18 C 0.055 3.945 19 C -0.141 4.141 20 C 0.182 3.818 21 N -0.613 5.613 22 C -0.234 4.234 23 H 0.083 0.917 24 C -0.063 4.063 25 N -0.950 5.950 26 Si 0.975 3.025 27 H -0.278 1.278 28 H -0.298 1.298 29 H -0.274 1.274 30 H 0.057 0.943 31 H 0.046 0.954 32 H 0.068 0.932 33 H 0.049 0.951 34 H 0.032 0.968 35 H 0.412 0.588 36 H 0.074 0.926 37 H 0.110 0.890 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.061 0.939 46 H 0.085 0.915 47 H 0.062 0.938 48 H 0.074 0.926 49 H -0.009 1.009 50 H 0.041 0.959 51 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.420 8.841 -1.952 25.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.166 4.166 3 C 0.053 3.947 4 H 0.071 0.929 5 C 0.053 3.947 6 H 0.091 0.909 7 N -0.353 5.353 8 C 0.306 3.694 9 O -0.455 6.455 10 C -0.154 4.154 11 H 0.138 0.862 12 C -0.067 4.067 13 N -0.251 5.251 14 C -0.077 4.077 15 C -0.181 4.181 16 C -0.088 4.088 17 C -0.197 4.197 18 C -0.073 4.073 19 C -0.181 4.181 20 C 0.057 3.943 21 N -0.338 5.338 22 C -0.363 4.363 23 H 0.101 0.899 24 C -0.256 4.256 25 N -0.599 5.599 26 Si 0.804 3.196 27 H -0.204 1.204 28 H -0.224 1.224 29 H -0.200 1.200 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.249 0.751 36 H 0.092 0.908 37 H 0.128 0.872 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.104 0.896 47 H 0.081 0.919 48 H 0.093 0.907 49 H 0.009 0.991 50 H 0.059 0.941 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -23.365 8.236 -2.298 24.881 hybrid contribution 2.069 -0.217 -0.122 2.084 sum -21.297 8.019 -2.420 22.885 Atomic orbital electron populations 1.21623 0.93710 1.01862 1.01632 1.21903 0.96549 0.97778 1.00364 1.21254 0.84335 0.94450 0.94677 0.92896 1.21562 0.84251 0.91928 0.96973 0.90905 1.45863 1.25546 1.51455 1.12390 1.21101 0.84137 0.80510 0.83614 1.90631 1.74014 1.54614 1.26271 1.22147 0.93126 1.00432 0.99681 0.86224 1.22326 0.87353 1.01201 0.95817 1.62537 1.21641 1.13464 1.27415 1.22322 0.97280 0.89848 0.98227 1.22261 0.95607 0.99207 1.01073 1.20885 0.96645 0.96413 0.94871 1.22410 1.00618 0.97227 0.99484 1.22187 0.99603 0.95334 0.90189 1.23226 0.95828 0.98780 1.00249 1.21117 0.93868 0.92288 0.87064 1.44679 1.00646 1.68565 1.19874 1.19283 0.90333 1.34925 0.91742 0.89932 1.25716 0.98530 1.01996 0.99366 1.70140 1.10053 1.54500 1.25161 0.85203 0.77159 0.78632 0.78647 1.20383 1.22448 1.19985 0.92424 0.93508 0.91297 0.93264 0.94957 0.75088 0.90767 0.87181 0.88976 0.89888 0.90290 0.90907 0.91748 0.91698 0.91870 0.92065 0.89636 0.91890 0.90734 0.99136 0.94088 0.94415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.54 9.59 71.98 0.69 -2.85 16 2 C -0.13 -4.62 5.41 30.59 0.17 -4.46 16 3 C 0.16 6.13 2.94 45.34 0.13 6.26 16 4 H 0.05 1.87 7.71 -2.39 -0.02 1.86 16 5 C 0.16 5.54 2.02 46.18 0.09 5.63 16 6 H 0.07 2.89 7.20 -2.39 -0.02 2.88 16 7 N -0.70 -17.99 4.69 -436.92 -2.05 -20.04 16 8 C 0.52 13.57 6.59 87.66 0.58 14.15 16 9 O -0.58 -20.04 13.37 -3.02 -0.04 -20.08 16 10 C -0.13 -2.35 2.60 -11.36 -0.03 -2.38 16 11 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 12 C 0.06 0.94 5.62 86.35 0.49 1.43 16 13 N -0.53 -8.39 5.22 -894.96 -4.67 -13.06 16 14 C 0.05 0.60 6.09 86.34 0.53 1.13 16 15 C -0.14 -1.81 5.75 30.77 0.18 -1.63 16 16 C -0.07 -1.30 2.59 -10.40 -0.03 -1.32 16 17 C -0.16 -3.37 5.43 30.80 0.17 -3.21 16 18 C 0.06 1.01 6.10 86.37 0.53 1.54 16 19 C -0.14 -5.51 6.77 31.99 0.22 -5.30 16 20 C 0.18 9.16 5.41 86.86 0.47 9.63 16 21 N -0.61 -30.56 3.13 -668.27 -2.09 -32.65 16 22 C -0.23 -12.71 9.75 84.03 0.82 -11.89 16 23 H 0.08 4.26 7.83 -2.91 -0.02 4.23 16 24 C -0.06 -3.53 5.47 84.86 0.46 -3.07 16 25 N -0.95 -57.26 10.57 21.65 0.23 -57.03 16 26 Si 0.98 45.28 29.55 68.60 2.03 47.30 16 27 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 28 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 29 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 30 H 0.06 1.43 8.14 -2.39 -0.02 1.42 16 31 H 0.05 1.28 7.43 -2.39 -0.02 1.27 16 32 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.05 1.94 7.89 -2.39 -0.02 1.92 16 34 H 0.03 1.31 8.06 -2.38 -0.02 1.30 16 35 H 0.41 8.22 8.29 -92.71 -0.77 7.45 16 36 H 0.07 1.29 7.47 -2.39 -0.02 1.28 16 37 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.06 1.45 8.13 -2.38 -0.02 1.43 16 43 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 44 H 0.06 1.80 5.56 -2.39 -0.01 1.79 16 45 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.06 2.43 8.14 -2.38 -0.02 2.42 16 48 H 0.07 2.71 8.14 -2.38 -0.02 2.69 16 49 H -0.01 -0.53 8.07 -2.39 -0.02 -0.55 16 50 H 0.04 2.30 6.91 -2.39 -0.02 2.28 16 51 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -68.53 380.71 -1.01 -69.54 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 0.13 Total: 22.36 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: 5.46 Total: 3.67 kcal Atomic # 7 Polarization: -114.20 SS G_CDS: -8.58 Total: -122.78 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.04 Total: -20.08 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -68.53 -1.01 -69.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087574180.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.768 kcal (2) G-P(sol) polarization free energy of solvation -68.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds