Wall clock time and date at job start Fri Apr 10 2020 18:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46904 * 110.99918 * 2 1 4 4 C 1.46902 * 111.00195 * 236.04481 * 2 1 3 5 5 C 1.50698 * 112.84647 * 55.39607 * 4 2 1 6 6 O 1.21286 * 119.99996 * 260.52899 * 5 4 2 7 7 N 1.34776 * 119.99926 * 80.53285 * 5 4 2 8 8 C 1.47761 * 125.81795 * 186.10773 * 7 5 4 9 9 C 1.56208 * 104.00541 * 154.05964 * 8 7 5 10 10 H 1.08997 * 113.91295 * 161.25596 * 9 8 7 11 11 C 1.52870 * 106.67425 * 286.46463 * 9 8 7 12 12 C 1.51603 * 111.55506 * 168.35021 * 11 9 8 13 13 N 1.44330 * 113.11459 * 320.91268 * 12 11 9 14 14 C 1.36939 * 116.35363 * 187.25733 * 13 12 11 15 15 H 1.07999 * 119.99473 * 155.08017 * 14 13 12 16 16 C 1.38809 * 119.99980 * 335.08295 * 14 13 12 17 17 N 1.31613 * 120.00220 * 5.00762 * 16 14 13 18 18 Si 1.86801 * 119.99724 * 185.01285 * 16 14 13 19 19 H 1.48499 * 109.47306 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47229 * 119.99765 * 18 16 14 21 21 H 1.48496 * 109.47094 * 239.99861 * 18 16 14 22 22 C 1.43989 * 127.28581 * 7.28294 * 13 12 11 23 23 C 1.49952 * 116.10030 * 2.47951 * 22 13 12 24 24 H 1.09003 * 108.82447 * 141.05356 * 23 22 13 25 25 C 1.47614 * 125.82232 * 6.41819 * 7 5 4 26 26 C 1.53778 * 113.61320 * 284.20218 * 4 2 1 27 27 C 1.53960 * 87.01738 * 220.04812 * 26 4 2 28 28 C 1.53780 * 113.61463 * 186.59012 * 4 2 1 29 29 H 1.09000 * 109.47060 * 178.92925 * 1 2 3 30 30 H 1.08999 * 109.47177 * 58.93218 * 1 2 3 31 31 H 1.08995 * 109.47449 * 298.93044 * 1 2 3 32 32 H 1.08997 * 109.46916 * 61.38174 * 3 2 1 33 33 H 1.09000 * 109.47125 * 181.38308 * 3 2 1 34 34 H 1.09000 * 109.46937 * 301.38377 * 3 2 1 35 35 H 1.08998 * 110.50404 * 272.80301 * 8 7 5 36 36 H 1.09003 * 110.50278 * 35.48669 * 8 7 5 37 37 H 1.09001 * 109.07009 * 47.81288 * 11 9 8 38 38 H 1.09001 * 109.05844 * 288.88323 * 11 9 8 39 39 H 1.08999 * 108.75467 * 199.97595 * 12 11 9 40 40 H 1.09001 * 108.75724 * 81.85459 * 12 11 9 41 41 H 0.97004 * 120.00141 * 180.02562 * 17 16 14 42 42 H 1.09003 * 108.15520 * 240.75386 * 22 13 12 43 43 H 1.09004 * 107.99665 * 124.07920 * 22 13 12 44 44 H 1.09004 * 110.07804 * 299.82155 * 25 7 5 45 45 H 1.08992 * 110.08108 * 61.32004 * 25 7 5 46 46 H 1.08999 * 113.61344 * 334.56562 * 26 4 2 47 47 H 1.08999 * 113.61919 * 105.47192 * 26 4 2 48 48 H 1.08994 * 113.53398 * 270.81032 * 27 26 4 49 49 H 1.09002 * 113.74191 * 139.94884 * 27 26 4 50 50 H 1.08994 * 113.61585 * 254.53252 * 28 4 2 51 51 H 1.09008 * 113.61200 * 25.43518 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 -1.1376 5 6 1.4689 -0.2808 -2.4636 6 8 0.5535 -0.8656 -3.0032 7 7 2.0152 0.8028 -3.0498 8 6 1.5227 1.4629 -4.2767 9 6 2.0188 2.9375 -4.1379 10 1 2.0320 3.4896 -5.0776 11 6 1.1417 3.5971 -3.0737 12 6 1.7012 4.9390 -2.6441 13 7 3.1407 4.9452 -2.5390 14 6 3.7066 6.0739 -2.0089 15 1 4.6745 6.0201 -1.5329 16 6 3.0362 7.2871 -2.0835 17 7 1.8159 7.3356 -2.5743 18 14 3.8660 8.8509 -1.4873 19 1 5.2255 8.5290 -0.9840 20 1 3.9695 9.8158 -2.6114 21 1 3.0625 9.4510 -0.3922 22 6 4.0483 3.8978 -2.9294 23 6 3.4272 2.6887 -3.5625 24 1 4.0715 2.3454 -4.3720 25 6 3.2113 1.5289 -2.5795 26 6 1.8935 -2.2894 -0.9544 27 6 3.2887 -2.3795 -1.5992 28 6 3.5230 -0.9412 -1.1082 29 1 -0.3633 -1.0275 -0.0192 30 1 -0.3633 0.5303 -0.8802 31 1 -0.3634 0.4971 0.8994 32 1 1.6661 1.8870 0.9021 33 1 3.0847 1.3425 -0.0248 34 1 1.6260 1.9024 -0.8773 35 1 1.9536 0.9944 -5.1615 36 1 0.4339 1.4290 -4.3176 37 1 1.0821 2.9416 -2.2049 38 1 0.1398 3.7421 -3.4780 39 1 1.2779 5.2010 -1.6744 40 1 1.3996 5.6934 -3.3707 41 1 1.3476 8.1835 -2.6267 42 1 4.5950 3.5744 -2.0436 43 1 4.7659 4.3192 -3.6335 44 1 3.0427 1.9164 -1.5747 45 1 4.0770 0.8667 -2.5844 46 1 1.8738 -2.6033 0.0892 47 1 1.1054 -2.7492 -1.5507 48 1 3.2612 -2.4711 -2.6850 49 1 3.9429 -3.1136 -1.1290 50 1 4.0483 -0.3140 -1.8283 51 1 3.9496 -0.8858 -0.1066 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087992147.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:47 Heat of formation + Delta-G solvation = 60.651940 kcal Electronic energy + Delta-G solvation = -30439.059227 eV Core-core repulsion = 26762.439367 eV Total energy + Delta-G solvation = -3676.619861 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.39045 -39.26311 -37.39337 -35.72475 -35.30304 -32.59640 -31.61217 -30.21655 -28.75434 -27.48038 -26.60632 -25.43949 -25.31779 -23.90382 -22.53753 -22.18024 -21.41496 -20.58445 -18.47785 -17.88141 -17.34419 -16.99417 -16.18998 -15.71612 -15.45731 -14.93978 -14.84182 -14.73949 -14.18979 -14.00581 -13.82651 -13.53795 -13.39223 -13.08752 -12.84193 -12.61735 -12.40568 -12.34132 -12.24961 -12.01016 -11.77168 -11.75128 -11.45474 -11.36760 -11.01947 -10.92742 -10.79563 -10.71929 -10.52937 -10.35734 -10.20858 -10.13445 -9.96885 -9.69184 -9.60082 -9.55678 -8.53772 -8.44657 -8.33519 -6.73177 -5.59501 -3.24824 2.57356 2.98627 3.34626 3.42294 3.43784 3.87855 4.25666 4.38541 4.46176 4.51646 4.66117 4.73344 4.80795 5.03037 5.06941 5.26949 5.29349 5.38488 5.39347 5.47307 5.53429 5.54457 5.56022 5.66512 5.66690 5.68263 5.79642 5.86113 5.88920 5.90387 5.93640 5.98806 6.01916 6.07682 6.17525 6.19001 6.28032 6.33397 6.55795 6.62849 6.70542 6.79012 6.80892 6.84873 6.90347 7.54102 7.58890 7.81706 8.09374 8.17276 8.54470 9.31955 10.00428 10.25456 11.23775 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.020334 B = 0.003960 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.672959 B = 7068.235079 C = 7272.315899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.508 5.508 3 C 0.000 4.000 4 C 0.064 3.936 5 C 0.526 3.474 6 O -0.544 6.544 7 N -0.607 5.607 8 C 0.105 3.895 9 C -0.082 4.082 10 H 0.100 0.900 11 C -0.131 4.131 12 C 0.174 3.826 13 N -0.599 5.599 14 C -0.258 4.258 15 H 0.069 0.931 16 C 0.006 3.994 17 N -0.907 5.907 18 Si 0.905 3.095 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.291 1.291 22 C 0.180 3.820 23 C -0.099 4.099 24 H 0.071 0.929 25 C 0.073 3.927 26 C -0.107 4.107 27 C -0.142 4.142 28 C -0.140 4.140 29 H 0.070 0.930 30 H 0.028 0.972 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.044 0.956 38 H 0.053 0.947 39 H 0.026 0.974 40 H 0.091 0.909 41 H 0.249 0.751 42 H 0.011 0.989 43 H 0.022 0.978 44 H 0.100 0.900 45 H 0.074 0.926 46 H 0.096 0.904 47 H 0.077 0.923 48 H 0.077 0.923 49 H 0.076 0.924 50 H 0.085 0.915 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.716 -15.878 1.511 16.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.232 5.232 3 C -0.147 4.147 4 C -0.030 4.030 5 C 0.312 3.688 6 O -0.421 6.421 7 N -0.341 5.341 8 C -0.018 4.018 9 C -0.101 4.101 10 H 0.118 0.882 11 C -0.169 4.169 12 C 0.050 3.950 13 N -0.325 5.325 14 C -0.388 4.388 15 H 0.087 0.913 16 C -0.191 4.191 17 N -0.554 5.554 18 Si 0.734 3.266 19 H -0.204 1.204 20 H -0.216 1.216 21 H -0.217 1.217 22 C 0.053 3.947 23 C -0.119 4.119 24 H 0.089 0.911 25 C -0.048 4.048 26 C -0.145 4.145 27 C -0.180 4.180 28 C -0.177 4.177 29 H 0.089 0.911 30 H 0.047 0.953 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.044 0.956 40 H 0.109 0.891 41 H 0.061 0.939 42 H 0.029 0.971 43 H 0.040 0.960 44 H 0.117 0.883 45 H 0.092 0.908 46 H 0.115 0.885 47 H 0.095 0.905 48 H 0.096 0.904 49 H 0.094 0.906 50 H 0.103 0.897 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.201 -16.403 1.671 16.532 hybrid contribution 0.072 1.381 -0.412 1.443 sum 1.272 -15.023 1.259 15.129 Atomic orbital electron populations 1.22402 0.86953 1.02378 1.01046 1.62627 1.08477 1.14518 1.37582 1.23023 1.00917 0.88335 1.02396 1.22696 0.97249 0.96288 0.86725 1.20592 0.82626 0.79166 0.86387 1.90661 1.30182 1.55984 1.65227 1.48761 1.29496 1.28516 1.27282 1.22724 0.99756 0.92764 0.86519 1.22281 0.94698 0.93174 0.99973 0.88223 1.21869 0.98181 0.99918 0.96912 1.20636 0.81855 0.91209 1.01288 1.42751 1.01455 1.15103 1.73154 1.19319 1.03304 0.85860 1.30313 0.91334 1.25194 0.96537 0.97816 0.99505 1.70068 1.10978 1.23809 1.50561 0.86171 0.78941 0.83692 0.77750 1.20353 1.21560 1.21749 1.19250 0.92048 0.87340 0.96040 1.21517 0.97505 0.95347 0.97497 0.91062 1.23216 0.86878 0.93404 1.01329 1.22891 0.97755 0.91784 1.02067 1.22789 0.97462 0.97110 1.00635 1.23500 0.93415 0.97416 1.03394 0.91081 0.95295 0.90961 0.90795 0.90469 0.93024 0.91870 0.90759 0.93758 0.92818 0.95608 0.89135 0.93939 0.97133 0.96028 0.88278 0.90782 0.88521 0.90450 0.90422 0.90567 0.89661 0.88246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.14 60.06 0.55 0.81 16 2 N -0.51 -6.58 4.92 -235.81 -1.16 -7.74 16 3 C 0.00 0.00 7.48 60.07 0.45 0.45 16 4 C 0.06 0.81 0.37 -131.94 -0.05 0.76 16 5 C 0.53 8.14 4.95 -10.99 -0.05 8.09 16 6 O -0.54 -10.03 16.51 5.55 0.09 -9.94 16 7 N -0.61 -8.98 2.38 -169.41 -0.40 -9.38 16 8 C 0.10 1.56 6.23 -1.63 -0.01 1.54 16 9 C -0.08 -1.32 3.78 -88.36 -0.33 -1.65 16 10 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 11 C -0.13 -2.43 4.98 -27.51 -0.14 -2.57 16 12 C 0.17 4.06 4.67 -5.91 -0.03 4.03 16 13 N -0.60 -14.09 3.25 -179.58 -0.58 -14.67 16 14 C -0.26 -6.78 9.41 -15.06 -0.14 -6.92 16 15 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 16 C 0.01 0.17 5.40 -17.43 -0.09 0.08 16 17 N -0.91 -25.17 9.53 55.49 0.53 -24.65 16 18 Si 0.90 21.14 29.56 -169.99 -5.02 16.12 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 C 0.18 3.45 5.67 -6.89 -0.04 3.41 16 23 C -0.10 -1.54 2.68 -91.23 -0.24 -1.78 16 24 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 25 C 0.07 1.02 3.70 -3.14 -0.01 1.00 16 26 C -0.11 -1.21 6.90 -25.83 -0.18 -1.39 16 27 C -0.14 -1.42 7.81 -25.82 -0.20 -1.62 16 28 C -0.14 -1.50 5.75 -25.92 -0.15 -1.65 16 29 H 0.07 0.87 7.74 -51.93 -0.40 0.47 16 30 H 0.03 0.44 7.36 -51.93 -0.38 0.05 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.08 0.98 6.05 -51.93 -0.31 0.66 16 34 H 0.05 0.81 3.47 -51.93 -0.18 0.63 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 1.17 7.99 -51.93 -0.41 0.76 16 37 H 0.04 0.83 4.66 -51.93 -0.24 0.58 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.03 0.68 7.80 -51.93 -0.41 0.27 16 40 H 0.09 2.40 5.83 -51.93 -0.30 2.10 16 41 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 42 H 0.01 0.21 7.78 -51.93 -0.40 -0.20 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.10 1.47 3.07 -51.93 -0.16 1.31 16 45 H 0.07 0.89 5.34 -51.93 -0.28 0.62 16 46 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.08 0.98 7.46 -51.93 -0.39 0.59 16 48 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.09 0.92 4.22 -51.93 -0.22 0.70 16 51 H 0.10 0.98 8.14 -51.92 -0.42 0.56 16 LS Contribution 360.86 15.07 5.44 5.44 Total: -1.00 -29.24 360.86 -10.07 -39.31 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -8.29 Total: 2.90 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -0.67 Total: 2.61 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: -1.62 Total: -56.43 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.24 -10.07 -39.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087992147.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.963 kcal (2) G-P(sol) polarization free energy of solvation -29.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds