Wall clock time and date at job start Fri Apr 10 2020 18:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46904 * 110.99918 * 2 1 4 4 C 1.46902 * 111.00195 * 236.04481 * 2 1 3 5 5 C 1.50698 * 112.84647 * 55.39607 * 4 2 1 6 6 O 1.21286 * 119.99996 * 260.52899 * 5 4 2 7 7 N 1.34776 * 119.99926 * 80.53285 * 5 4 2 8 8 C 1.47761 * 125.81795 * 186.10773 * 7 5 4 9 9 C 1.56208 * 104.00541 * 154.05964 * 8 7 5 10 10 H 1.08997 * 113.91295 * 161.25596 * 9 8 7 11 11 C 1.52870 * 106.67425 * 286.46463 * 9 8 7 12 12 C 1.51603 * 111.55506 * 168.35021 * 11 9 8 13 13 N 1.44330 * 113.11459 * 320.91268 * 12 11 9 14 14 C 1.36939 * 116.35363 * 187.25733 * 13 12 11 15 15 H 1.07999 * 119.99473 * 155.08017 * 14 13 12 16 16 C 1.38809 * 119.99980 * 335.08295 * 14 13 12 17 17 N 1.31613 * 120.00220 * 5.00762 * 16 14 13 18 18 Si 1.86801 * 119.99724 * 185.01285 * 16 14 13 19 19 H 1.48499 * 109.47306 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47229 * 119.99765 * 18 16 14 21 21 H 1.48496 * 109.47094 * 239.99861 * 18 16 14 22 22 C 1.43989 * 127.28581 * 7.28294 * 13 12 11 23 23 C 1.49952 * 116.10030 * 2.47951 * 22 13 12 24 24 H 1.09003 * 108.82447 * 141.05356 * 23 22 13 25 25 C 1.47614 * 125.82232 * 6.41819 * 7 5 4 26 26 C 1.53778 * 113.61320 * 284.20218 * 4 2 1 27 27 C 1.53960 * 87.01738 * 220.04812 * 26 4 2 28 28 C 1.53780 * 113.61463 * 186.59012 * 4 2 1 29 29 H 1.09000 * 109.47060 * 178.92925 * 1 2 3 30 30 H 1.08999 * 109.47177 * 58.93218 * 1 2 3 31 31 H 1.08995 * 109.47449 * 298.93044 * 1 2 3 32 32 H 1.08997 * 109.46916 * 61.38174 * 3 2 1 33 33 H 1.09000 * 109.47125 * 181.38308 * 3 2 1 34 34 H 1.09000 * 109.46937 * 301.38377 * 3 2 1 35 35 H 1.08998 * 110.50404 * 272.80301 * 8 7 5 36 36 H 1.09003 * 110.50278 * 35.48669 * 8 7 5 37 37 H 1.09001 * 109.07009 * 47.81288 * 11 9 8 38 38 H 1.09001 * 109.05844 * 288.88323 * 11 9 8 39 39 H 1.08999 * 108.75467 * 199.97595 * 12 11 9 40 40 H 1.09001 * 108.75724 * 81.85459 * 12 11 9 41 41 H 0.97004 * 120.00141 * 180.02562 * 17 16 14 42 42 H 1.09003 * 108.15520 * 240.75386 * 22 13 12 43 43 H 1.09004 * 107.99665 * 124.07920 * 22 13 12 44 44 H 1.09004 * 110.07804 * 299.82155 * 25 7 5 45 45 H 1.08992 * 110.08108 * 61.32004 * 25 7 5 46 46 H 1.08999 * 113.61344 * 334.56562 * 26 4 2 47 47 H 1.08999 * 113.61919 * 105.47192 * 26 4 2 48 48 H 1.08994 * 113.53398 * 270.81032 * 27 26 4 49 49 H 1.09002 * 113.74191 * 139.94884 * 27 26 4 50 50 H 1.08994 * 113.61585 * 254.53252 * 28 4 2 51 51 H 1.09008 * 113.61200 * 25.43518 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 -1.1376 5 6 1.4689 -0.2808 -2.4636 6 8 0.5535 -0.8656 -3.0032 7 7 2.0152 0.8028 -3.0498 8 6 1.5227 1.4629 -4.2767 9 6 2.0188 2.9375 -4.1379 10 1 2.0320 3.4896 -5.0776 11 6 1.1417 3.5971 -3.0737 12 6 1.7012 4.9390 -2.6441 13 7 3.1407 4.9452 -2.5390 14 6 3.7066 6.0739 -2.0089 15 1 4.6745 6.0201 -1.5329 16 6 3.0362 7.2871 -2.0835 17 7 1.8159 7.3356 -2.5743 18 14 3.8660 8.8509 -1.4873 19 1 5.2255 8.5290 -0.9840 20 1 3.9695 9.8158 -2.6114 21 1 3.0625 9.4510 -0.3922 22 6 4.0483 3.8978 -2.9294 23 6 3.4272 2.6887 -3.5625 24 1 4.0715 2.3454 -4.3720 25 6 3.2113 1.5289 -2.5795 26 6 1.8935 -2.2894 -0.9544 27 6 3.2887 -2.3795 -1.5992 28 6 3.5230 -0.9412 -1.1082 29 1 -0.3633 -1.0275 -0.0192 30 1 -0.3633 0.5303 -0.8802 31 1 -0.3634 0.4971 0.8994 32 1 1.6661 1.8870 0.9021 33 1 3.0847 1.3425 -0.0248 34 1 1.6260 1.9024 -0.8773 35 1 1.9536 0.9944 -5.1615 36 1 0.4339 1.4290 -4.3176 37 1 1.0821 2.9416 -2.2049 38 1 0.1398 3.7421 -3.4780 39 1 1.2779 5.2010 -1.6744 40 1 1.3996 5.6934 -3.3707 41 1 1.3476 8.1835 -2.6267 42 1 4.5950 3.5744 -2.0436 43 1 4.7659 4.3192 -3.6335 44 1 3.0427 1.9164 -1.5747 45 1 4.0770 0.8667 -2.5844 46 1 1.8738 -2.6033 0.0892 47 1 1.1054 -2.7492 -1.5507 48 1 3.2612 -2.4711 -2.6850 49 1 3.9429 -3.1136 -1.1290 50 1 4.0483 -0.3140 -1.8283 51 1 3.9496 -0.8858 -0.1066 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087992147.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:46 Heat of formation + Delta-G solvation = 42.661156 kcal Electronic energy + Delta-G solvation = -30439.839366 eV Core-core repulsion = 26762.439367 eV Total energy + Delta-G solvation = -3677.399999 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.51266 -40.54153 -38.60816 -37.35960 -36.29149 -34.21802 -33.15745 -31.90468 -30.03189 -28.72347 -27.69700 -26.86906 -26.28535 -25.47092 -23.76044 -23.58614 -22.86439 -21.62432 -19.58973 -19.43351 -18.92672 -18.27065 -17.40525 -16.90763 -16.78108 -16.63077 -15.90418 -15.83099 -15.66053 -15.49201 -15.17793 -14.86785 -14.80964 -14.64922 -14.15906 -13.84764 -13.73470 -13.46240 -13.37178 -13.27167 -13.05783 -12.93751 -12.81184 -12.71403 -12.64370 -12.31102 -12.11560 -12.00341 -11.91846 -11.76402 -11.70475 -11.43026 -11.31984 -11.27752 -11.03016 -10.96837 -10.46109 -9.70035 -9.48542 -8.68303 -7.61254 -5.29383 1.39885 1.47511 1.49700 1.59051 1.83927 2.51525 2.85102 3.24079 3.30008 3.35615 3.49347 3.63319 3.65395 3.76512 3.83155 3.85275 4.03613 4.10550 4.23586 4.28939 4.35579 4.39246 4.46675 4.51072 4.53263 4.60553 4.65141 4.76078 4.84077 4.86230 4.87629 4.90525 4.93673 4.95450 5.04598 5.05196 5.09525 5.13006 5.18171 5.22859 5.28567 5.35611 5.36558 5.57385 5.76837 5.77787 5.88163 6.11723 6.40903 6.51676 6.98741 7.29122 8.12269 8.28728 9.19043 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.020334 B = 0.003960 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.672959 B = 7068.235079 C = 7272.315899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.500 5.500 3 C 0.005 3.995 4 C 0.053 3.947 5 C 0.524 3.476 6 O -0.580 6.580 7 N -0.607 5.607 8 C 0.111 3.889 9 C -0.079 4.079 10 H 0.101 0.899 11 C -0.119 4.119 12 C 0.193 3.807 13 N -0.609 5.609 14 C -0.268 4.268 15 H 0.073 0.927 16 C -0.047 4.047 17 N -0.934 5.934 18 Si 0.965 3.035 19 H -0.265 1.265 20 H -0.292 1.292 21 H -0.296 1.296 22 C 0.177 3.823 23 C -0.095 4.095 24 H 0.101 0.899 25 C 0.079 3.921 26 C -0.105 4.105 27 C -0.132 4.132 28 C -0.131 4.131 29 H 0.076 0.924 30 H 0.001 0.999 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.027 0.973 35 H 0.085 0.915 36 H 0.061 0.939 37 H 0.045 0.955 38 H 0.052 0.948 39 H -0.017 1.017 40 H 0.057 0.943 41 H 0.243 0.757 42 H 0.022 0.978 43 H 0.019 0.981 44 H 0.091 0.909 45 H 0.105 0.895 46 H 0.111 0.889 47 H 0.059 0.941 48 H 0.068 0.932 49 H 0.101 0.899 50 H 0.087 0.913 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.990 -17.719 1.938 18.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.223 5.223 3 C -0.143 4.143 4 C -0.040 4.040 5 C 0.311 3.689 6 O -0.459 6.459 7 N -0.339 5.339 8 C -0.011 4.011 9 C -0.098 4.098 10 H 0.120 0.880 11 C -0.157 4.157 12 C 0.068 3.932 13 N -0.335 5.335 14 C -0.398 4.398 15 H 0.091 0.909 16 C -0.241 4.241 17 N -0.582 5.582 18 Si 0.794 3.206 19 H -0.189 1.189 20 H -0.219 1.219 21 H -0.223 1.223 22 C 0.051 3.949 23 C -0.114 4.114 24 H 0.119 0.881 25 C -0.042 4.042 26 C -0.143 4.143 27 C -0.170 4.170 28 C -0.168 4.168 29 H 0.095 0.905 30 H 0.019 0.981 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.046 0.954 35 H 0.103 0.897 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.002 0.998 40 H 0.074 0.926 41 H 0.053 0.947 42 H 0.040 0.960 43 H 0.037 0.963 44 H 0.109 0.891 45 H 0.122 0.878 46 H 0.129 0.871 47 H 0.078 0.922 48 H 0.087 0.913 49 H 0.119 0.881 50 H 0.105 0.895 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.516 -18.260 2.102 18.714 hybrid contribution -0.662 1.957 -0.517 2.130 sum 2.854 -16.303 1.585 16.627 Atomic orbital electron populations 1.22397 0.87277 1.02486 1.00339 1.62707 1.08140 1.14058 1.37398 1.22978 1.01609 0.88408 1.01267 1.22905 0.99048 0.97027 0.85044 1.21112 0.82006 0.78801 0.86986 1.90641 1.31733 1.57173 1.66343 1.48818 1.29673 1.28293 1.27162 1.22635 0.99155 0.91768 0.87541 1.22208 0.94782 0.93778 0.99029 0.88039 1.21657 0.98473 0.97583 0.97955 1.20132 0.82179 0.92910 0.97969 1.42957 1.01803 1.15676 1.73104 1.19670 1.03247 0.86886 1.29999 0.90937 1.25906 0.97092 1.00622 1.00491 1.70340 1.12081 1.23765 1.51998 0.85221 0.78452 0.80114 0.76824 1.18921 1.21905 1.22282 1.19390 0.91429 0.87547 0.96526 1.21461 0.97170 0.94356 0.98446 0.88071 1.23223 0.87463 0.93263 1.00246 1.22935 0.98245 0.90355 1.02809 1.22750 0.96713 0.97355 1.00189 1.23514 0.91303 0.97709 1.04307 0.90488 0.98059 0.89706 0.90769 0.89173 0.95438 0.89726 0.92093 0.93658 0.92919 0.99845 0.92552 0.94700 0.96018 0.96340 0.89143 0.87799 0.87055 0.92223 0.91288 0.88070 0.89486 0.86760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 9.14 127.69 1.17 1.76 16 2 N -0.50 -12.13 4.92 -899.96 -4.42 -16.55 16 3 C 0.00 0.12 7.48 127.69 0.96 1.07 16 4 C 0.05 1.25 0.37 3.30 0.00 1.25 16 5 C 0.52 15.56 4.95 87.66 0.43 15.99 16 6 O -0.58 -21.22 16.51 -3.05 -0.05 -21.27 16 7 N -0.61 -16.88 2.38 -808.27 -1.93 -18.81 16 8 C 0.11 3.14 6.23 87.25 0.54 3.68 16 9 C -0.08 -2.45 3.78 -9.33 -0.04 -2.48 16 10 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 11 C -0.12 -4.50 4.98 30.09 0.15 -4.35 16 12 C 0.19 9.32 4.67 86.33 0.40 9.73 16 13 N -0.61 -28.85 3.25 -722.08 -2.35 -31.20 16 14 C -0.27 -14.11 9.41 84.03 0.79 -13.32 16 15 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 16 C -0.05 -2.56 5.40 84.86 0.46 -2.10 16 17 N -0.93 -53.70 9.53 21.65 0.21 -53.50 16 18 Si 0.97 43.93 29.56 68.60 2.03 45.95 16 19 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 20 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 21 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 22 C 0.18 6.49 5.67 85.87 0.49 6.98 16 23 C -0.10 -2.71 2.68 -11.19 -0.03 -2.74 16 24 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 25 C 0.08 1.98 3.70 86.36 0.32 2.30 16 26 C -0.11 -2.15 6.90 31.18 0.22 -1.93 16 27 C -0.13 -2.20 7.81 31.18 0.24 -1.96 16 28 C -0.13 -2.33 5.75 31.12 0.18 -2.15 16 29 H 0.08 1.85 7.74 -2.39 -0.02 1.83 16 30 H 0.00 0.02 7.36 -2.39 -0.02 0.01 16 31 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.09 2.06 6.05 -2.39 -0.01 2.05 16 34 H 0.03 0.85 3.47 -2.39 -0.01 0.84 16 35 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.06 1.90 7.99 -2.39 -0.02 1.88 16 37 H 0.04 1.72 4.66 -2.39 -0.01 1.71 16 38 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 39 H -0.02 -0.93 7.80 -2.39 -0.02 -0.95 16 40 H 0.06 3.15 5.83 -2.39 -0.01 3.13 16 41 H 0.24 13.65 8.31 -92.70 -0.77 12.87 16 42 H 0.02 0.77 7.78 -2.39 -0.02 0.75 16 43 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 44 H 0.09 2.49 3.07 -2.38 -0.01 2.49 16 45 H 0.10 2.05 5.34 -2.39 -0.01 2.04 16 46 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.06 1.44 7.46 -2.39 -0.02 1.42 16 48 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 49 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 50 H 0.09 1.51 4.22 -2.39 -0.01 1.50 16 51 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -65.25 360.86 0.70 -64.55 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.93 Total: 19.11 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: 6.28 Total: 11.72 kcal Atomic # 7 Polarization: -111.57 SS G_CDS: -8.49 Total: -120.06 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.05 Total: -21.27 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -65.25 0.70 -64.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087992147.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.215 kcal (2) G-P(sol) polarization free energy of solvation -65.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds