Wall clock time and date at job start Fri Apr 10 2020 18:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46897 * 111.00060 * 2 1 4 4 C 1.50707 * 109.46696 * 293.94669 * 3 2 1 5 5 O 1.21277 * 120.00093 * 0.02562 * 4 3 2 6 6 N 1.34781 * 119.99890 * 180.02562 * 4 3 2 7 7 C 1.48090 * 125.74336 * 180.02562 * 6 4 3 8 8 C 1.53850 * 103.41301 * 204.44722 * 7 6 4 9 9 H 1.09000 * 109.06380 * 73.84598 * 8 7 6 10 10 C 1.49841 * 114.34659 * 195.56589 * 8 7 6 11 11 C 1.51599 * 114.45570 * 66.00885 * 10 8 7 12 12 N 1.44533 * 112.99999 * 35.49757 * 11 10 8 13 13 C 1.36942 * 117.26602 * 150.68790 * 12 11 10 14 14 H 1.08004 * 119.99658 * 205.10872 * 13 12 11 15 15 C 1.38810 * 120.00238 * 25.10459 * 13 12 11 16 16 N 1.31621 * 119.99762 * 17.22933 * 15 13 12 17 17 Si 1.86790 * 119.99992 * 197.22670 * 15 13 12 18 18 H 1.48507 * 109.46958 * 269.99888 * 17 15 13 19 19 H 1.48495 * 109.47663 * 29.99969 * 17 15 13 20 20 H 1.48508 * 109.47109 * 150.00412 * 17 15 13 21 21 C 1.44402 * 125.46370 * 330.40015 * 12 11 10 22 22 C 1.52993 * 113.17967 * 34.94605 * 21 12 11 23 23 H 1.08996 * 112.80446 * 84.26543 * 22 21 12 24 24 C 1.47460 * 125.74230 * 0.02590 * 6 4 3 25 25 C 1.46909 * 110.99902 * 123.94771 * 2 1 3 26 26 C 1.53780 * 113.61451 * 153.54301 * 25 2 1 27 27 C 1.53782 * 87.07782 * 220.01998 * 26 25 2 28 28 C 1.53780 * 87.08507 * 25.43310 * 27 26 25 29 29 H 1.08998 * 109.46796 * 60.00288 * 1 2 3 30 30 H 1.08996 * 109.46876 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47357 * 300.00854 * 1 2 3 32 32 H 1.08998 * 109.47242 * 173.95579 * 3 2 1 33 33 H 1.08993 * 109.47828 * 53.94847 * 3 2 1 34 34 H 1.09003 * 110.63554 * 322.92852 * 7 6 4 35 35 H 1.09003 * 110.63218 * 85.96482 * 7 6 4 36 36 H 1.09004 * 108.47102 * 187.51384 * 10 8 7 37 37 H 1.08999 * 108.47659 * 304.89918 * 10 8 7 38 38 H 1.08997 * 108.96610 * 274.49690 * 11 10 8 39 39 H 1.09003 * 108.68912 * 156.30132 * 11 10 8 40 40 H 0.96997 * 119.99757 * 180.02562 * 16 15 13 41 41 H 1.09008 * 108.73948 * 155.89563 * 21 12 11 42 42 H 1.09001 * 108.74435 * 273.98511 * 21 12 11 43 43 H 1.09002 * 110.03942 * 62.78374 * 24 6 4 44 44 H 1.09001 * 110.08558 * 301.35653 * 24 6 4 45 45 H 1.08996 * 112.84648 * 284.85325 * 25 2 1 46 46 H 1.09001 * 113.61139 * 334.57043 * 26 25 2 47 47 H 1.09000 * 113.61209 * 105.47048 * 26 25 2 48 48 H 1.08999 * 113.61493 * 270.87686 * 27 26 25 49 49 H 1.09002 * 113.61101 * 139.98225 * 27 26 25 50 50 H 1.09000 * 113.61486 * 220.01727 * 28 27 26 51 51 H 1.09003 * 113.68716 * 89.12172 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 -1.2986 5 8 1.0049 1.4454 -2.1408 6 7 2.0190 3.3197 -1.5240 7 6 1.7370 4.1037 -2.7483 8 6 2.8597 5.1555 -2.7651 9 1 3.7946 4.6738 -3.0515 10 6 2.6134 6.3071 -3.6916 11 6 1.4458 7.1904 -3.2984 12 7 1.3019 7.3323 -1.8673 13 6 0.7532 8.4985 -1.4045 14 1 0.9786 8.8423 -0.4058 15 6 -0.0926 9.2388 -2.2191 16 7 -0.6380 8.6824 -3.2799 17 14 -0.4568 11.0245 -1.8095 18 1 -1.6494 11.0967 -0.9274 19 1 0.7111 11.6208 -1.1128 20 1 -0.7221 11.7757 -3.0629 21 6 1.6829 6.3449 -0.8849 22 6 2.9352 5.5580 -1.2764 23 1 3.8581 6.0723 -1.0087 24 6 2.7881 4.1659 -0.5929 25 6 1.9955 -0.7659 1.1377 26 6 3.3939 -1.3554 0.8893 27 6 2.9042 -2.6190 1.6162 28 6 1.4814 -2.2141 1.1961 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8899 32 1 3.0797 1.3444 0.1082 33 1 1.5612 1.9274 0.8308 34 1 1.7925 3.4685 -3.6324 35 1 0.7611 4.5845 -2.6802 36 1 3.5153 6.9180 -3.7305 37 1 2.4245 5.9128 -4.6901 38 1 0.5274 6.7642 -3.7022 39 1 1.5924 8.1782 -3.7354 40 1 -1.2287 9.1998 -3.8493 41 1 1.8680 6.8483 0.0641 42 1 0.8571 5.6459 -0.7524 43 1 3.7718 3.7302 -0.4179 44 1 2.2518 4.2676 0.3505 45 1 1.9067 -0.2327 2.0842 46 1 3.6184 -1.5174 -0.1650 47 1 4.1896 -0.8290 1.4165 48 1 3.0654 -2.5929 2.6939 49 1 3.2474 -3.5467 1.1583 50 1 0.7332 -2.3810 1.9709 51 1 1.1818 -2.6105 0.2259 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087994645.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:50 Heat of formation + Delta-G solvation = 28.334091 kcal Electronic energy + Delta-G solvation = -28394.539605 eV Core-core repulsion = 24716.518338 eV Total energy + Delta-G solvation = -3678.021268 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.38981 -39.49658 -38.18512 -35.54337 -34.90355 -32.79824 -31.40631 -30.32452 -28.82582 -27.32861 -26.28858 -25.49703 -25.25118 -24.04016 -22.47107 -21.74539 -21.54296 -19.57064 -19.03717 -18.06006 -17.13042 -16.59190 -16.17926 -16.00168 -15.54063 -15.30775 -14.85713 -14.83238 -14.17901 -14.09170 -13.76987 -13.58746 -13.19851 -13.05056 -12.86466 -12.82631 -12.63715 -12.42738 -12.20554 -12.05780 -11.84262 -11.72156 -11.52384 -11.24389 -11.10494 -10.90768 -10.79945 -10.70923 -10.61548 -10.48692 -10.24052 -10.13341 -9.94577 -9.72052 -9.53351 -9.40758 -8.48777 -8.43799 -8.34574 -6.67734 -5.73209 -3.21951 2.81543 3.00935 3.36636 3.43975 3.45859 3.86175 4.29027 4.42938 4.47487 4.55526 4.61427 4.67674 4.77796 4.98243 5.06601 5.13935 5.19723 5.26800 5.40107 5.40299 5.41046 5.48694 5.51330 5.59068 5.59256 5.63180 5.65693 5.69606 5.77325 5.86505 5.94918 6.01493 6.04787 6.08214 6.17793 6.21751 6.31030 6.40349 6.49968 6.57165 6.70307 6.79143 6.83361 6.90214 6.97558 7.42723 7.73909 7.79583 7.84653 8.38424 8.47597 9.28290 9.96316 10.30186 11.28719 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.025083 B = 0.002637 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.007032 B =10616.919823 C =10819.294187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.513 5.513 3 C 0.042 3.958 4 C 0.528 3.472 5 O -0.529 6.529 6 N -0.617 5.617 7 C 0.117 3.883 8 C -0.082 4.082 9 H 0.061 0.939 10 C -0.125 4.125 11 C 0.187 3.813 12 N -0.590 5.590 13 C -0.267 4.267 14 H 0.066 0.934 15 C 0.005 3.995 16 N -0.902 5.902 17 Si 0.901 3.099 18 H -0.288 1.288 19 H -0.280 1.280 20 H -0.290 1.290 21 C 0.168 3.832 22 C -0.108 4.108 23 H 0.096 0.904 24 C 0.103 3.897 25 C 0.050 3.950 26 C -0.128 4.128 27 C -0.142 4.142 28 C -0.129 4.129 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.019 0.981 32 H 0.100 0.900 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.038 0.962 39 H 0.054 0.946 40 H 0.253 0.747 41 H 0.042 0.958 42 H 0.008 0.992 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.091 0.909 47 H 0.064 0.936 48 H 0.078 0.922 49 H 0.070 0.930 50 H 0.064 0.936 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.208 -17.455 8.423 21.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.237 5.237 3 C -0.089 4.089 4 C 0.316 3.684 5 O -0.406 6.406 6 N -0.353 5.353 7 C -0.004 4.004 8 C -0.101 4.101 9 H 0.080 0.920 10 C -0.164 4.164 11 C 0.062 3.938 12 N -0.313 5.313 13 C -0.397 4.397 14 H 0.083 0.917 15 C -0.194 4.194 16 N -0.546 5.546 17 Si 0.730 3.270 18 H -0.215 1.215 19 H -0.206 1.206 20 H -0.216 1.216 21 C 0.041 3.959 22 C -0.127 4.127 23 H 0.114 0.886 24 C -0.020 4.020 25 C -0.058 4.058 26 C -0.166 4.166 27 C -0.180 4.180 28 C -0.167 4.167 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.037 0.963 32 H 0.118 0.882 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.056 0.944 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.026 0.974 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.109 0.891 47 H 0.082 0.918 48 H 0.097 0.903 49 H 0.089 0.911 50 H 0.083 0.917 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.885 -18.066 7.408 21.453 hybrid contribution -0.493 1.519 1.006 1.888 sum 8.392 -16.547 8.414 20.372 Atomic orbital electron populations 1.22538 0.86482 1.02282 1.01670 1.61937 1.08787 1.11531 1.41450 1.21913 1.01854 0.89935 0.95229 1.20057 0.79512 0.79981 0.88837 1.90657 1.39738 1.63442 1.46737 1.48764 1.55189 1.11795 1.19504 1.22223 0.99726 0.91824 0.86653 1.21149 0.97597 0.95772 0.95588 0.92013 1.21005 1.01381 0.96221 0.97827 1.19894 0.93154 0.97211 0.83557 1.42795 1.71189 1.16222 1.01064 1.19266 1.22198 0.97850 1.00393 0.91667 1.25005 0.96931 0.99082 0.98389 1.70110 1.32181 1.34856 1.17442 0.86330 0.78105 0.85277 0.77249 1.21455 1.20555 1.21562 1.20307 0.91919 0.91078 0.92624 1.22811 1.01187 0.93819 0.94933 0.88603 1.22511 0.95083 0.91408 0.93019 1.23255 0.96898 0.93643 0.92010 1.22985 0.95570 0.96359 1.01657 1.22719 0.96747 0.98284 1.00261 1.22984 0.96750 0.94820 1.02130 0.89208 0.91389 0.96259 0.88202 0.92070 0.90972 0.90105 0.92839 0.92550 0.94420 0.92785 0.93689 0.93922 0.97401 0.91962 0.91294 0.91709 0.89068 0.91761 0.90330 0.91106 0.91699 0.89096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.01 60.07 0.54 0.76 16 2 N -0.51 -6.13 4.46 -235.34 -1.05 -7.18 16 3 C 0.04 0.50 4.62 -4.97 -0.02 0.47 16 4 C 0.53 8.24 7.58 -10.98 -0.08 8.16 16 5 O -0.53 -10.08 14.59 5.56 0.08 -10.00 16 6 N -0.62 -9.44 3.33 -169.36 -0.56 -10.00 16 7 C 0.12 2.01 5.84 -2.73 -0.02 1.99 16 8 C -0.08 -1.30 2.69 -91.01 -0.25 -1.55 16 9 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 10 C -0.13 -2.25 5.46 -29.01 -0.16 -2.41 16 11 C 0.19 4.36 4.37 -5.80 -0.03 4.33 16 12 N -0.59 -14.24 3.17 -177.27 -0.56 -14.80 16 13 C -0.27 -7.18 9.32 -15.06 -0.14 -7.32 16 14 H 0.07 1.72 7.70 -52.48 -0.40 1.31 16 15 C 0.00 0.13 4.81 -17.43 -0.08 0.05 16 16 N -0.90 -25.90 10.79 55.49 0.60 -25.30 16 17 Si 0.90 21.48 29.59 -169.99 -5.03 16.45 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 C 0.17 3.32 4.94 -5.16 -0.03 3.29 16 22 C -0.11 -1.65 3.98 -88.41 -0.35 -2.00 16 23 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 24 C 0.10 1.33 5.63 -2.04 -0.01 1.32 16 25 C 0.05 0.47 3.20 -66.89 -0.21 0.25 16 26 C -0.13 -1.05 7.66 -25.92 -0.20 -1.25 16 27 C -0.14 -0.99 8.08 -25.92 -0.21 -1.20 16 28 C -0.13 -1.05 6.54 -25.92 -0.17 -1.22 16 29 H 0.09 1.35 5.88 -51.93 -0.31 1.04 16 30 H 0.07 0.73 6.91 -51.93 -0.36 0.37 16 31 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.10 1.01 7.91 -51.93 -0.41 0.60 16 33 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 34 H 0.07 1.24 8.06 -51.93 -0.42 0.82 16 35 H 0.08 1.64 7.07 -51.93 -0.37 1.27 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.04 0.99 7.27 -51.93 -0.38 0.62 16 39 H 0.05 1.40 6.94 -51.93 -0.36 1.04 16 40 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.04 0.83 7.72 -51.92 -0.40 0.43 16 42 H 0.01 0.18 6.91 -51.93 -0.36 -0.18 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.07 0.83 7.74 -51.93 -0.40 0.43 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.09 0.82 7.90 -51.93 -0.41 0.41 16 LS Contribution 383.14 15.07 5.77 5.77 Total: -1.00 -30.90 383.14 -11.37 -42.27 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -9.20 Total: -0.88 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -1.41 Total: 3.67 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: -1.58 Total: -57.29 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.08 Total: -10.00 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.90 -11.37 -42.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087994645.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.608 kcal (2) G-P(sol) polarization free energy of solvation -30.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds