Wall clock time and date at job start Fri Apr 10 2020 18:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46897 * 111.00060 * 2 1 4 4 C 1.50707 * 109.46696 * 293.94669 * 3 2 1 5 5 O 1.21277 * 120.00093 * 0.02562 * 4 3 2 6 6 N 1.34781 * 119.99890 * 180.02562 * 4 3 2 7 7 C 1.48090 * 125.74336 * 180.02562 * 6 4 3 8 8 C 1.53850 * 103.41301 * 204.44722 * 7 6 4 9 9 H 1.09000 * 109.06380 * 73.84598 * 8 7 6 10 10 C 1.49841 * 114.34659 * 195.56589 * 8 7 6 11 11 C 1.51599 * 114.45570 * 66.00885 * 10 8 7 12 12 N 1.44533 * 112.99999 * 35.49757 * 11 10 8 13 13 C 1.36942 * 117.26602 * 150.68790 * 12 11 10 14 14 H 1.08004 * 119.99658 * 205.10872 * 13 12 11 15 15 C 1.38810 * 120.00238 * 25.10459 * 13 12 11 16 16 N 1.31621 * 119.99762 * 17.22933 * 15 13 12 17 17 Si 1.86790 * 119.99992 * 197.22670 * 15 13 12 18 18 H 1.48507 * 109.46958 * 269.99888 * 17 15 13 19 19 H 1.48495 * 109.47663 * 29.99969 * 17 15 13 20 20 H 1.48508 * 109.47109 * 150.00412 * 17 15 13 21 21 C 1.44402 * 125.46370 * 330.40015 * 12 11 10 22 22 C 1.52993 * 113.17967 * 34.94605 * 21 12 11 23 23 H 1.08996 * 112.80446 * 84.26543 * 22 21 12 24 24 C 1.47460 * 125.74230 * 0.02590 * 6 4 3 25 25 C 1.46909 * 110.99902 * 123.94771 * 2 1 3 26 26 C 1.53780 * 113.61451 * 153.54301 * 25 2 1 27 27 C 1.53782 * 87.07782 * 220.01998 * 26 25 2 28 28 C 1.53780 * 87.08507 * 25.43310 * 27 26 25 29 29 H 1.08998 * 109.46796 * 60.00288 * 1 2 3 30 30 H 1.08996 * 109.46876 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47357 * 300.00854 * 1 2 3 32 32 H 1.08998 * 109.47242 * 173.95579 * 3 2 1 33 33 H 1.08993 * 109.47828 * 53.94847 * 3 2 1 34 34 H 1.09003 * 110.63554 * 322.92852 * 7 6 4 35 35 H 1.09003 * 110.63218 * 85.96482 * 7 6 4 36 36 H 1.09004 * 108.47102 * 187.51384 * 10 8 7 37 37 H 1.08999 * 108.47659 * 304.89918 * 10 8 7 38 38 H 1.08997 * 108.96610 * 274.49690 * 11 10 8 39 39 H 1.09003 * 108.68912 * 156.30132 * 11 10 8 40 40 H 0.96997 * 119.99757 * 180.02562 * 16 15 13 41 41 H 1.09008 * 108.73948 * 155.89563 * 21 12 11 42 42 H 1.09001 * 108.74435 * 273.98511 * 21 12 11 43 43 H 1.09002 * 110.03942 * 62.78374 * 24 6 4 44 44 H 1.09001 * 110.08558 * 301.35653 * 24 6 4 45 45 H 1.08996 * 112.84648 * 284.85325 * 25 2 1 46 46 H 1.09001 * 113.61139 * 334.57043 * 26 25 2 47 47 H 1.09000 * 113.61209 * 105.47048 * 26 25 2 48 48 H 1.08999 * 113.61493 * 270.87686 * 27 26 25 49 49 H 1.09002 * 113.61101 * 139.98225 * 27 26 25 50 50 H 1.09000 * 113.61486 * 220.01727 * 28 27 26 51 51 H 1.09003 * 113.68716 * 89.12172 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 -1.2986 5 8 1.0049 1.4454 -2.1408 6 7 2.0190 3.3197 -1.5240 7 6 1.7370 4.1037 -2.7483 8 6 2.8597 5.1555 -2.7651 9 1 3.7946 4.6738 -3.0515 10 6 2.6134 6.3071 -3.6916 11 6 1.4458 7.1904 -3.2984 12 7 1.3019 7.3323 -1.8673 13 6 0.7532 8.4985 -1.4045 14 1 0.9786 8.8423 -0.4058 15 6 -0.0926 9.2388 -2.2191 16 7 -0.6380 8.6824 -3.2799 17 14 -0.4568 11.0245 -1.8095 18 1 -1.6494 11.0967 -0.9274 19 1 0.7111 11.6208 -1.1128 20 1 -0.7221 11.7757 -3.0629 21 6 1.6829 6.3449 -0.8849 22 6 2.9352 5.5580 -1.2764 23 1 3.8581 6.0723 -1.0087 24 6 2.7881 4.1659 -0.5929 25 6 1.9955 -0.7659 1.1377 26 6 3.3939 -1.3554 0.8893 27 6 2.9042 -2.6190 1.6162 28 6 1.4814 -2.2141 1.1961 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8899 32 1 3.0797 1.3444 0.1082 33 1 1.5612 1.9274 0.8308 34 1 1.7925 3.4685 -3.6324 35 1 0.7611 4.5845 -2.6802 36 1 3.5153 6.9180 -3.7305 37 1 2.4245 5.9128 -4.6901 38 1 0.5274 6.7642 -3.7022 39 1 1.5924 8.1782 -3.7354 40 1 -1.2287 9.1998 -3.8493 41 1 1.8680 6.8483 0.0641 42 1 0.8571 5.6459 -0.7524 43 1 3.7718 3.7302 -0.4179 44 1 2.2518 4.2676 0.3505 45 1 1.9067 -0.2327 2.0842 46 1 3.6184 -1.5174 -0.1650 47 1 4.1896 -0.8290 1.4165 48 1 3.0654 -2.5929 2.6939 49 1 3.2474 -3.5467 1.1583 50 1 0.7332 -2.3810 1.9709 51 1 1.1818 -2.6105 0.2259 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087994645.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:49 Heat of formation + Delta-G solvation = 8.935450 kcal Electronic energy + Delta-G solvation = -28395.380794 eV Core-core repulsion = 24716.518338 eV Total energy + Delta-G solvation = -3678.862456 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.61872 -40.41133 -39.37584 -37.16391 -35.81793 -34.40832 -33.06257 -31.96238 -29.99017 -28.54601 -27.19970 -27.02052 -26.15192 -25.43009 -23.62647 -23.16233 -22.93537 -20.29503 -20.16393 -19.60505 -18.47234 -18.12733 -17.27721 -17.10046 -16.80063 -16.56767 -16.16225 -15.91605 -15.62567 -15.34788 -15.22261 -14.92571 -14.68667 -14.46639 -14.22768 -13.83379 -13.69213 -13.45803 -13.40533 -13.26515 -12.91122 -12.88742 -12.72645 -12.62852 -12.49274 -12.37130 -12.23964 -12.00727 -11.88733 -11.77783 -11.55502 -11.42645 -11.36686 -11.09264 -10.99173 -10.70749 -10.49990 -9.63139 -9.31280 -8.69634 -7.80554 -5.33228 1.45280 1.46921 1.56628 1.63370 1.88570 2.51167 2.98438 3.27762 3.41243 3.49880 3.64637 3.78139 3.84319 3.84962 3.91105 3.99797 4.06392 4.22191 4.27468 4.28690 4.39306 4.48577 4.50619 4.54403 4.56754 4.63299 4.68486 4.69910 4.80147 4.88767 4.89389 4.96937 5.01182 5.05812 5.07152 5.08379 5.12727 5.16359 5.24484 5.34627 5.35422 5.39352 5.52383 5.52853 5.69196 5.88819 5.90559 6.18297 6.39628 6.58328 7.19297 7.21503 8.04022 8.27905 9.18163 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.025083 B = 0.002637 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.007032 B =10616.919823 C =10819.294187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.530 5.530 3 C 0.051 3.949 4 C 0.521 3.479 5 O -0.574 6.574 6 N -0.619 5.619 7 C 0.121 3.879 8 C -0.076 4.076 9 H 0.098 0.902 10 C -0.116 4.116 11 C 0.201 3.799 12 N -0.603 5.603 13 C -0.276 4.276 14 H 0.071 0.929 15 C -0.052 4.052 16 N -0.936 5.936 17 Si 0.966 3.034 18 H -0.287 1.287 19 H -0.267 1.267 20 H -0.295 1.295 21 C 0.164 3.836 22 C -0.098 4.098 23 H 0.125 0.875 24 C 0.108 3.892 25 C 0.046 3.954 26 C -0.126 4.126 27 C -0.133 4.133 28 C -0.132 4.132 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.026 0.974 32 H 0.127 0.873 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.035 0.965 36 H 0.071 0.929 37 H 0.065 0.935 38 H -0.007 1.007 39 H 0.019 0.981 40 H 0.247 0.753 41 H 0.048 0.952 42 H -0.014 1.014 43 H 0.107 0.893 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.078 0.922 48 H 0.093 0.907 49 H 0.074 0.926 50 H 0.073 0.927 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.299 -18.376 10.991 24.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.254 5.254 3 C -0.080 4.080 4 C 0.311 3.689 5 O -0.453 6.453 6 N -0.353 5.353 7 C -0.002 4.002 8 C -0.096 4.096 9 H 0.116 0.884 10 C -0.155 4.155 11 C 0.075 3.925 12 N -0.326 5.326 13 C -0.406 4.406 14 H 0.088 0.912 15 C -0.248 4.248 16 N -0.582 5.582 17 Si 0.794 3.206 18 H -0.214 1.214 19 H -0.192 1.192 20 H -0.221 1.221 21 C 0.038 3.962 22 C -0.117 4.117 23 H 0.143 0.857 24 C -0.014 4.014 25 C -0.061 4.061 26 C -0.164 4.164 27 C -0.171 4.171 28 C -0.169 4.169 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.045 0.955 32 H 0.145 0.855 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.053 0.947 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.010 0.990 39 H 0.037 0.963 40 H 0.056 0.944 41 H 0.066 0.934 42 H 0.004 0.996 43 H 0.125 0.875 44 H 0.098 0.902 45 H 0.095 0.905 46 H 0.094 0.906 47 H 0.097 0.903 48 H 0.112 0.888 49 H 0.093 0.907 50 H 0.091 0.909 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 12.016 -18.996 10.027 24.613 hybrid contribution -1.531 1.770 0.221 2.350 sum 10.485 -17.227 10.247 22.621 Atomic orbital electron populations 1.22391 0.87282 1.02486 1.00231 1.61918 1.08308 1.11908 1.43305 1.21917 1.03413 0.89728 0.92921 1.20864 0.78520 0.79800 0.89727 1.90643 1.41613 1.64550 1.48498 1.48872 1.55273 1.11943 1.19221 1.21957 0.98210 0.92279 0.87722 1.21118 0.98239 0.94473 0.95735 0.88418 1.20838 0.99396 0.96429 0.98851 1.19553 0.93677 0.96105 0.83153 1.43080 1.71030 1.16601 1.01935 1.19680 1.21541 0.98882 1.00511 0.91166 1.25807 0.97387 1.02925 0.98650 1.70311 1.33232 1.36025 1.18659 0.85308 0.78097 0.80568 0.76669 1.21385 1.19151 1.22104 1.20475 0.93514 0.90204 0.91957 1.22773 0.99672 0.94682 0.94592 0.85680 1.22656 0.97062 0.89491 0.92235 1.23412 0.97628 0.93657 0.91426 1.22957 0.95306 0.96988 1.01127 1.22709 0.95348 0.97957 1.01052 1.22984 0.97903 0.94272 1.01777 0.92663 0.90425 0.95549 0.85512 0.90658 0.91609 0.94675 0.90987 0.91652 0.98951 0.96251 0.94393 0.93357 0.99641 0.87502 0.90216 0.90544 0.90564 0.90288 0.88816 0.90703 0.90878 0.90486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 9.01 127.69 1.15 1.73 16 2 N -0.53 -11.85 4.46 -898.49 -4.01 -15.86 16 3 C 0.05 1.08 4.62 85.56 0.40 1.47 16 4 C 0.52 15.79 7.58 87.66 0.66 16.45 16 5 O -0.57 -22.42 14.59 -3.02 -0.04 -22.46 16 6 N -0.62 -17.97 3.33 -808.12 -2.69 -20.67 16 7 C 0.12 4.17 5.84 86.36 0.50 4.68 16 8 C -0.08 -2.27 2.69 -11.05 -0.03 -2.30 16 9 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 10 C -0.12 -4.11 5.46 29.12 0.16 -3.95 16 11 C 0.20 9.74 4.37 86.29 0.38 10.12 16 12 N -0.60 -29.72 3.17 -714.77 -2.27 -31.99 16 13 C -0.28 -15.06 9.32 84.03 0.78 -14.28 16 14 H 0.07 3.69 7.70 -2.91 -0.02 3.67 16 15 C -0.05 -2.95 4.81 84.86 0.41 -2.54 16 16 N -0.94 -56.48 10.79 21.65 0.23 -56.25 16 17 Si 0.97 45.09 29.59 68.60 2.03 47.12 16 18 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 19 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 20 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 21 C 0.16 6.39 4.94 86.77 0.43 6.82 16 22 C -0.10 -2.69 3.98 -9.36 -0.04 -2.73 16 23 H 0.13 2.85 8.14 -2.39 -0.02 2.83 16 24 C 0.11 2.35 5.63 87.15 0.49 2.84 16 25 C 0.05 0.74 3.20 45.44 0.15 0.88 16 26 C -0.13 -1.69 7.66 31.12 0.24 -1.46 16 27 C -0.13 -1.47 8.08 31.12 0.25 -1.22 16 28 C -0.13 -1.88 6.54 31.12 0.20 -1.67 16 29 H 0.05 1.73 5.88 -2.39 -0.01 1.72 16 30 H 0.08 1.66 6.91 -2.39 -0.02 1.64 16 31 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.13 2.01 7.91 -2.39 -0.02 1.99 16 33 H 0.08 1.41 8.12 -2.39 -0.02 1.39 16 34 H 0.07 2.31 8.06 -2.39 -0.02 2.29 16 35 H 0.03 1.52 7.07 -2.39 -0.02 1.50 16 36 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 37 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 38 H -0.01 -0.42 7.27 -2.39 -0.02 -0.44 16 39 H 0.02 1.04 6.94 -2.39 -0.02 1.02 16 40 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 41 H 0.05 1.81 7.72 -2.38 -0.02 1.79 16 42 H -0.01 -0.61 6.91 -2.39 -0.02 -0.63 16 43 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.08 1.62 7.74 -2.39 -0.02 1.60 16 45 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.07 0.78 8.14 -2.39 -0.02 0.77 16 50 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 51 H 0.08 1.32 7.90 -2.39 -0.02 1.30 16 Total: -1.00 -72.53 383.14 0.27 -72.26 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.88 Total: 13.00 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: 6.13 Total: 14.85 kcal Atomic # 7 Polarization: -116.03 SS G_CDS: -8.74 Total: -124.77 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.04 Total: -22.46 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -72.53 0.27 -72.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087994645.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.199 kcal (2) G-P(sol) polarization free energy of solvation -72.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds