Wall clock time and date at job start Fri Apr 10 2020 18:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86803 * 120.00388 * 2 1 4 4 H 1.48502 * 109.47104 * 240.00441 * 3 2 1 5 5 H 1.48497 * 109.46838 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47417 * 120.00173 * 3 2 1 7 7 C 1.38817 * 119.99829 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00257 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00113 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00438 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.51711 * 324.87392 * 10 9 7 12 12 C 1.53804 * 109.52123 * 84.99630 * 10 9 7 13 13 C 1.52450 * 109.40371 * 197.80882 * 12 10 9 14 14 C 1.53954 * 110.72774 * 246.26902 * 13 12 10 15 15 C 1.52877 * 109.72623 * 44.36835 * 14 13 12 16 16 C 1.53442 * 109.38591 * 72.89042 * 15 14 13 17 17 N 1.45328 * 108.41884 * 282.27205 * 16 15 14 18 18 C 1.34780 * 120.36554 * 136.63130 * 17 16 15 19 19 O 1.21282 * 119.99976 * 175.39776 * 18 17 16 20 20 C 1.50695 * 119.99972 * 355.39926 * 18 17 16 21 21 C 1.56248 * 116.69071 * 58.60093 * 20 18 17 22 22 C 1.56951 * 102.16334 * 159.28685 * 21 20 18 23 23 N 1.49519 * 105.47036 * 1.12776 * 22 21 20 24 24 C 1.49519 * 105.92192 * 70.93916 * 23 22 21 25 25 C 1.54659 * 105.28738 * 288.73738 * 24 23 22 26 26 C 1.50469 * 102.03473 * 324.52723 * 23 22 21 27 27 C 1.46964 * 119.26975 * 316.65877 * 17 16 15 28 28 H 0.97005 * 119.99759 * 0.02562 * 1 2 3 29 29 H 0.96999 * 119.99855 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.47927 * 77.83373 * 12 10 9 31 31 H 1.08998 * 109.48645 * 317.78748 * 12 10 9 32 32 H 1.09005 * 109.22499 * 125.94723 * 13 12 10 33 33 H 1.08997 * 109.18874 * 6.57247 * 13 12 10 34 34 H 1.09006 * 109.42750 * 164.44030 * 14 13 12 35 35 H 1.08992 * 109.43198 * 284.28645 * 14 13 12 36 36 H 1.09001 * 109.48593 * 192.86172 * 15 14 13 37 37 H 1.08994 * 109.48592 * 312.91719 * 15 14 13 38 38 H 1.09007 * 109.67674 * 162.53743 * 16 15 14 39 39 H 1.09003 * 109.67555 * 42.00490 * 16 15 14 40 40 H 1.08995 * 110.67035 * 277.38687 * 21 20 18 41 41 H 1.08996 * 110.66623 * 40.52171 * 21 20 18 42 42 H 1.08998 * 110.46231 * 241.97478 * 22 21 20 43 43 H 1.09002 * 109.91705 * 119.99842 * 22 21 20 44 44 H 1.09005 * 110.28179 * 169.78645 * 24 23 22 45 45 H 1.08995 * 110.36457 * 47.73577 * 24 23 22 46 46 H 1.08998 * 110.67579 * 240.91283 * 25 24 23 47 47 H 1.08994 * 110.81517 * 117.83837 * 25 24 23 48 48 H 1.08997 * 112.69283 * 297.54277 * 26 23 22 49 49 H 1.08994 * 111.12019 * 171.33554 * 26 23 22 50 50 H 1.09000 * 109.53330 * 351.74801 * 27 17 16 51 51 H 1.09004 * 109.59224 * 231.56119 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0005 11 1 2.9676 -3.5522 -0.5916 12 6 2.4243 -4.0388 1.4436 13 6 3.5349 -5.0830 1.4250 14 6 3.0266 -6.4289 1.9730 15 6 1.6526 -6.7416 1.3800 16 6 1.8124 -7.1399 -0.0932 17 7 2.0134 -5.9321 -0.8761 18 6 2.9508 -5.8957 -1.8440 19 8 3.0569 -4.9144 -2.5487 20 6 3.8668 -7.0743 -2.0504 21 6 3.1869 -8.4438 -2.3719 22 6 4.3583 -9.2454 -3.0419 23 7 5.5368 -8.3257 -3.0159 24 6 5.9567 -8.2373 -1.5836 25 6 4.8526 -7.4095 -0.8853 26 6 4.8927 -6.9840 -3.2374 27 6 1.1838 -4.7507 -0.6005 28 1 -0.4850 0.8401 -0.0004 29 1 0.3555 -2.3880 0.0002 30 1 1.5477 -4.4494 1.9446 31 1 2.7672 -3.1529 1.9781 32 1 4.3648 -4.7353 2.0404 33 1 3.8807 -5.2200 0.4005 34 1 3.7270 -7.2187 1.7013 35 1 2.9486 -6.3722 3.0586 36 1 1.1972 -7.5641 1.9316 37 1 1.0166 -5.8594 1.4512 38 1 0.9131 -7.6530 -0.4343 39 1 2.6749 -7.7971 -0.2043 40 1 2.8553 -8.9332 -1.4562 41 1 2.3528 -8.3070 -3.0600 42 1 4.1038 -9.5045 -4.0696 43 1 4.5692 -10.1461 -2.4654 44 1 6.9179 -7.7297 -1.5023 45 1 6.0175 -9.2328 -1.1441 46 1 5.2680 -6.4967 -0.4583 47 1 4.3535 -7.9997 -0.1169 48 1 4.3922 -6.9121 -4.2030 49 1 5.6098 -6.1757 -3.0945 50 1 0.3957 -5.0153 0.1044 51 1 0.7377 -4.3929 -1.5285 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088414339.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:07 Heat of formation + Delta-G solvation = -5.709175 kcal Electronic energy + Delta-G solvation = -30120.340364 eV Core-core repulsion = 26440.842869 eV Total energy + Delta-G solvation = -3679.497494 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.49074 -40.66936 -38.67632 -36.72549 -35.10271 -34.01937 -31.97198 -31.51598 -31.26370 -29.12984 -28.84865 -27.27497 -25.82637 -24.45125 -23.48823 -22.70699 -22.16922 -21.50001 -20.62855 -19.78213 -19.11977 -17.84192 -17.31466 -17.08945 -16.95306 -16.42467 -16.28982 -16.01313 -15.36521 -15.21840 -15.19898 -14.76522 -14.69523 -14.33306 -13.94334 -13.72808 -13.68955 -13.51155 -13.15454 -13.08816 -12.93835 -12.78632 -12.66393 -12.52682 -12.38674 -12.31090 -12.22827 -12.18429 -11.95987 -11.88295 -11.62367 -11.55322 -11.42834 -11.23777 -11.04852 -10.96969 -10.69909 -10.00242 -9.52833 -9.01822 -7.98094 -5.26124 1.40857 1.44856 1.50548 1.54385 1.94031 2.53399 2.81354 3.34100 3.37020 3.46868 3.60266 3.75268 3.89822 3.97219 4.01993 4.03327 4.11488 4.13561 4.16923 4.18683 4.34079 4.41829 4.45305 4.49731 4.50876 4.55952 4.61248 4.66861 4.73387 4.78431 4.82953 4.85709 4.94189 4.96153 4.99840 5.05157 5.06451 5.16263 5.17427 5.21180 5.38533 5.42246 5.44924 5.48292 5.49049 5.60528 5.70754 5.72256 6.24703 6.48600 7.19770 7.30180 8.04480 8.29398 9.24976 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.017523 B = 0.003923 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.539354 B = 7135.775505 C = 7705.292026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.070 4.070 3 Si 0.969 3.031 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.238 4.238 8 H 0.061 0.939 9 N -0.733 5.733 10 C 0.168 3.832 11 H 0.021 0.979 12 C -0.129 4.129 13 C -0.116 4.116 14 C -0.106 4.106 15 C -0.150 4.150 16 C 0.091 3.909 17 N -0.589 5.589 18 C 0.539 3.461 19 O -0.584 6.584 20 C -0.131 4.131 21 C -0.130 4.130 22 C 0.015 3.985 23 N -0.474 5.474 24 C 0.016 3.984 25 C -0.130 4.130 26 C 0.036 3.964 27 C 0.124 3.876 28 H 0.252 0.748 29 H 0.373 0.627 30 H 0.074 0.926 31 H 0.028 0.972 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.105 0.895 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.068 0.932 42 H 0.085 0.915 43 H 0.106 0.894 44 H 0.080 0.920 45 H 0.109 0.891 46 H 0.058 0.942 47 H 0.107 0.893 48 H 0.079 0.921 49 H 0.069 0.931 50 H 0.104 0.896 51 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.343 -27.610 2.230 28.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.263 4.263 3 Si 0.797 3.203 4 H -0.211 1.211 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.370 4.370 8 H 0.079 0.921 9 N -0.374 5.374 10 C 0.059 3.941 11 H 0.039 0.961 12 C -0.168 4.168 13 C -0.154 4.154 14 C -0.144 4.144 15 C -0.188 4.188 16 C -0.030 4.030 17 N -0.320 5.320 18 C 0.327 3.673 19 O -0.464 6.464 20 C -0.136 4.136 21 C -0.169 4.169 22 C -0.114 4.114 23 N -0.194 5.194 24 C -0.113 4.113 25 C -0.169 4.169 26 C -0.094 4.094 27 C 0.000 4.000 28 H 0.061 0.939 29 H 0.205 0.795 30 H 0.092 0.908 31 H 0.047 0.953 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.123 0.877 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.130 0.870 40 H 0.128 0.872 41 H 0.087 0.913 42 H 0.103 0.897 43 H 0.124 0.876 44 H 0.098 0.902 45 H 0.127 0.873 46 H 0.077 0.923 47 H 0.125 0.875 48 H 0.098 0.902 49 H 0.088 0.912 50 H 0.122 0.878 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 8.114 -27.221 1.383 28.439 hybrid contribution -0.789 2.322 0.277 2.468 sum 7.326 -24.899 1.660 26.008 Atomic orbital electron populations 1.69786 1.06315 1.26120 1.59444 1.25468 0.96425 1.00708 1.03674 0.85290 0.77388 0.79584 0.78008 1.21149 1.21428 1.20219 1.19397 0.90804 0.85473 1.41284 0.92139 1.42418 1.05339 1.00792 1.88807 1.20743 0.93997 0.85038 0.94334 0.96053 1.22308 0.99312 0.97615 0.97601 1.21688 0.97200 0.95918 1.00609 1.21723 0.96769 0.95549 1.00332 1.22345 0.98294 1.03199 0.94913 1.22307 1.03995 0.85810 0.90893 1.47697 1.35524 1.13888 1.34888 1.20143 0.80412 0.87512 0.79196 1.90756 1.71399 1.36445 1.47764 1.23656 0.96256 0.94040 0.99678 1.23828 0.98618 0.91563 1.02886 1.24102 0.88259 0.96690 1.02301 1.69969 1.25086 1.04080 1.20281 1.23680 0.97970 1.01707 0.87900 1.23395 0.95956 1.01077 0.96468 1.24219 0.94548 0.93360 0.97249 1.21500 0.93511 0.85270 0.99683 0.93896 0.79463 0.90757 0.95346 0.93287 0.93284 0.89850 0.91251 0.87715 0.91513 0.89828 0.87045 0.87232 0.91313 0.89651 0.87563 0.90174 0.87310 0.92277 0.87472 0.90214 0.91194 0.87812 0.94138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.03 13.06 21.65 0.28 -60.74 16 2 C -0.07 -4.25 5.50 84.86 0.47 -3.79 16 3 Si 0.97 48.78 29.55 68.60 2.03 50.81 16 4 H -0.28 -14.19 7.11 99.48 0.71 -13.48 16 5 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 6 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 7 C -0.24 -14.26 9.88 84.04 0.83 -13.43 16 8 H 0.06 3.63 7.83 -2.91 -0.02 3.61 16 9 N -0.73 -39.65 5.13 -322.70 -1.66 -41.31 16 10 C 0.17 7.26 2.39 45.04 0.11 7.36 16 11 H 0.02 1.08 6.29 -2.39 -0.02 1.07 16 12 C -0.13 -4.62 5.09 30.68 0.16 -4.46 16 13 C -0.12 -3.15 5.41 30.73 0.17 -2.98 16 14 C -0.11 -1.82 5.75 30.88 0.18 -1.64 16 15 C -0.15 -2.36 5.45 30.70 0.17 -2.19 16 16 C 0.09 1.45 4.98 86.75 0.43 1.88 16 17 N -0.59 -15.85 1.68 -823.95 -1.39 -17.24 16 18 C 0.54 16.81 5.59 87.65 0.49 17.30 16 19 O -0.58 -25.54 15.50 -3.04 -0.05 -25.59 16 20 C -0.13 -2.78 0.92 -49.21 -0.05 -2.82 16 21 C -0.13 -1.76 5.28 33.11 0.17 -1.58 16 22 C 0.02 0.18 6.67 87.18 0.58 0.77 16 23 N -0.47 -8.37 6.94 -851.63 -5.91 -14.28 16 24 C 0.02 0.22 6.60 86.36 0.57 0.79 16 25 C -0.13 -2.04 5.07 32.29 0.16 -1.88 16 26 C 0.04 0.85 6.09 87.06 0.53 1.38 16 27 C 0.12 4.36 4.64 86.07 0.40 4.76 16 28 H 0.25 15.40 8.31 -92.70 -0.77 14.63 16 29 H 0.37 21.06 7.80 -92.71 -0.72 20.33 16 30 H 0.07 2.40 5.47 -2.39 -0.01 2.39 16 31 H 0.03 1.20 8.08 -2.39 -0.02 1.18 16 32 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.05 1.46 3.85 -2.39 -0.01 1.45 16 34 H 0.08 1.01 6.64 -2.38 -0.02 0.99 16 35 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.07 1.42 3.35 -2.39 -0.01 1.41 16 38 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.11 1.27 2.20 -2.39 -0.01 1.26 16 40 H 0.11 0.85 5.95 -2.39 -0.01 0.83 16 41 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.11 0.76 7.69 -2.39 -0.02 0.74 16 44 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 45 H 0.11 0.88 7.70 -2.39 -0.02 0.87 16 46 H 0.06 1.19 7.07 -2.39 -0.02 1.17 16 47 H 0.11 1.06 4.92 -2.39 -0.01 1.05 16 48 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 49 H 0.07 1.91 8.13 -2.39 -0.02 1.89 16 50 H 0.10 3.11 6.07 -2.39 -0.01 3.10 16 51 H 0.04 1.69 8.05 -2.39 -0.02 1.67 16 Total: -1.00 -78.15 359.03 -1.09 -79.24 By element: Atomic # 1 Polarization: 29.42 SS G_CDS: 0.23 Total: 29.65 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: 5.37 Total: -0.54 kcal Atomic # 7 Polarization: -124.91 SS G_CDS: -8.67 Total: -133.58 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.05 Total: -25.59 kcal Atomic # 14 Polarization: 48.78 SS G_CDS: 2.03 Total: 50.81 kcal Total: -78.15 -1.09 -79.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088414339.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.532 kcal (2) G-P(sol) polarization free energy of solvation -78.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds