Wall clock time and date at job start Fri Apr 10 2020 18:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.99426 * 2 1 4 4 C 1.54327 * 109.88223 * 238.90498 * 2 1 3 5 5 H 1.09005 * 110.71595 * 336.75187 * 4 2 1 6 6 N 1.46489 * 110.72071 * 100.02592 * 4 2 1 7 7 C 1.34781 * 120.00124 * 204.99711 * 6 4 2 8 8 O 1.21274 * 119.99594 * 355.33257 * 7 6 4 9 9 C 1.50695 * 120.00040 * 175.32741 * 7 6 4 10 10 H 1.08994 * 109.47868 * 321.77360 * 9 7 6 11 11 C 1.53008 * 109.47060 * 81.77818 * 9 7 6 12 12 C 1.52996 * 117.49711 * 10.39855 * 11 9 7 13 13 C 1.53002 * 117.49646 * 301.74068 * 11 9 7 14 14 N 1.46900 * 109.47242 * 201.77090 * 9 7 6 15 15 C 1.48530 * 111.00247 * 293.66699 * 14 9 7 16 16 C 1.54939 * 103.22866 * 159.71770 * 15 14 9 17 17 C 1.54591 * 102.91908 * 322.58372 * 16 15 14 18 18 C 1.47904 * 110.99714 * 51.06290 * 14 9 7 19 19 C 1.55151 * 102.93927 * 218.38990 * 4 2 1 20 20 C 1.54690 * 101.68068 * 35.33518 * 19 4 2 21 21 N 1.47016 * 109.88238 * 121.09555 * 2 1 3 22 22 C 1.36937 * 125.64729 * 298.32035 * 21 2 1 23 23 H 1.08007 * 120.00204 * 348.16504 * 22 21 2 24 24 C 1.38813 * 120.00196 * 168.16109 * 22 21 2 25 25 N 1.31619 * 120.00003 * 350.77358 * 24 22 21 26 26 Si 1.86803 * 120.00359 * 170.77121 * 24 22 21 27 27 H 1.48502 * 109.47020 * 265.06077 * 26 24 22 28 28 H 1.48497 * 109.46720 * 25.05751 * 26 24 22 29 29 H 1.48495 * 109.47063 * 145.05664 * 26 24 22 30 30 H 1.09002 * 109.47502 * 300.36170 * 1 2 3 31 31 H 1.09006 * 109.47364 * 60.35831 * 1 2 3 32 32 H 1.08998 * 109.47474 * 180.36077 * 1 2 3 33 33 H 0.97003 * 120.00225 * 25.00135 * 6 4 2 34 34 H 1.08997 * 115.54980 * 156.06941 * 11 9 7 35 35 H 1.09003 * 117.49980 * 0.02562 * 12 11 9 36 36 H 1.08998 * 117.49989 * 145.02384 * 12 11 9 37 37 H 1.08994 * 117.50078 * 214.98277 * 13 11 9 38 38 H 1.09004 * 117.49360 * 359.97438 * 13 11 9 39 39 H 1.09001 * 110.66505 * 278.14706 * 15 14 9 40 40 H 1.09000 * 110.66829 * 41.28105 * 15 14 9 41 41 H 1.08995 * 110.72469 * 204.22640 * 16 15 14 42 42 H 1.09001 * 110.72360 * 80.94026 * 16 15 14 43 43 H 1.09001 * 110.31218 * 263.03670 * 17 16 15 44 44 H 1.09007 * 110.30956 * 140.87343 * 17 16 15 45 45 H 1.09000 * 109.91574 * 333.50415 * 18 14 9 46 46 H 1.08991 * 109.92406 * 94.60293 * 18 14 9 47 47 H 1.09005 * 111.00532 * 153.57480 * 19 4 2 48 48 H 1.09002 * 111.00440 * 277.38863 * 19 4 2 49 49 H 1.09004 * 110.39723 * 204.36336 * 20 19 4 50 50 H 1.09000 * 110.23995 * 82.11062 * 20 19 4 51 51 H 0.96994 * 120.00646 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0549 -0.7495 -1.2427 5 1 1.3050 -1.4460 -1.6182 6 7 2.4554 0.1960 -2.2875 7 6 2.4582 -0.1884 -3.5793 8 8 2.2113 -1.3397 -3.8698 9 6 2.7680 0.8123 -4.6626 10 1 2.3188 1.7726 -4.4095 11 6 4.2842 0.9756 -4.7876 12 6 5.1666 -0.0195 -4.0314 13 6 5.0511 1.4265 -3.5428 14 7 2.2199 0.3368 -5.9398 15 6 2.9177 -0.8934 -6.3935 16 6 1.9158 -1.5204 -7.3953 17 6 0.5454 -1.2273 -6.7427 18 6 0.7956 -0.0362 -5.7993 19 6 3.2876 -1.5142 -0.6924 20 6 2.8191 -1.8763 0.7367 21 7 2.0300 -0.7140 1.1839 22 6 1.8050 -0.3555 2.4862 23 1 1.3840 0.6125 2.7148 24 6 2.1178 -1.2362 3.5125 25 7 2.4578 -2.4769 3.2343 26 14 2.0563 -0.6606 5.2886 27 1 3.4123 -0.2335 5.7177 28 1 1.1168 0.4834 5.4058 29 1 1.5910 -1.7741 6.1539 30 1 -0.3634 0.5194 0.8867 31 1 -0.3634 0.5083 -0.8932 32 1 -0.3634 -1.0276 0.0065 33 1 2.7188 1.0988 -2.0496 34 1 4.6406 1.3307 -5.7545 35 1 4.6670 -0.7909 -3.4451 36 1 6.1038 -0.3188 -4.5005 37 1 5.9123 2.0780 -3.6908 38 1 4.4754 1.6072 -2.6350 39 1 3.8541 -0.6428 -6.8920 40 1 3.0953 -1.5665 -5.5548 41 1 2.0793 -2.5944 -7.4833 42 1 1.9905 -1.0367 -8.3693 43 1 0.2032 -2.0934 -6.1761 44 1 -0.1869 -0.9593 -7.5044 45 1 0.5880 -0.3279 -4.7698 46 1 0.1619 0.8045 -6.0817 47 1 3.4852 -2.4111 -1.2796 48 1 4.1655 -0.8690 -0.6610 49 1 3.6776 -2.0264 1.3913 50 1 2.1971 -2.7711 0.7143 51 1 2.6768 -3.0923 3.9514 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088770208.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:21 Heat of formation + Delta-G solvation = 11.858628 kcal Electronic energy + Delta-G solvation = -29298.179992 eV Core-core repulsion = 25619.444295 eV Total energy + Delta-G solvation = -3678.735697 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.10262 -39.89672 -38.38097 -37.83035 -35.54509 -33.83049 -32.93684 -32.11431 -30.57858 -29.75393 -27.88496 -26.23258 -25.83180 -23.49413 -23.07047 -22.41153 -22.00314 -21.62870 -21.43836 -20.44988 -18.73589 -18.08780 -17.76007 -17.33148 -16.73088 -16.48639 -16.22349 -15.76686 -15.51422 -15.34620 -15.23211 -14.96612 -14.49238 -14.12972 -14.03362 -13.75071 -13.51977 -13.29619 -13.23480 -12.94676 -12.80232 -12.72303 -12.62141 -12.43396 -12.37091 -12.22635 -12.16879 -12.07838 -11.97102 -11.91992 -11.66905 -11.57346 -11.53296 -11.28634 -11.19133 -10.85163 -10.70585 -10.00792 -9.26137 -8.88310 -7.87788 -5.23944 1.46736 1.47724 1.55001 1.56850 2.08339 2.50530 2.74331 2.99835 3.32703 3.51971 3.61170 3.76964 3.79912 3.83083 3.89648 3.91954 3.99853 4.06878 4.16415 4.19864 4.44729 4.46023 4.49956 4.51839 4.59034 4.60781 4.73016 4.76336 4.77123 4.81513 4.90617 4.97632 5.00151 5.01224 5.06319 5.10205 5.13890 5.20469 5.21503 5.24428 5.33972 5.38647 5.44637 5.53820 5.61378 5.67122 5.84419 5.92702 6.19138 6.52923 7.06261 7.21177 7.74769 8.41377 9.24469 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.021704 B = 0.003269 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.749674 B = 8562.837628 C = 9012.635521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.151 3.849 3 H 0.054 0.946 4 C 0.157 3.843 5 H 0.074 0.926 6 N -0.704 5.704 7 C 0.495 3.505 8 O -0.565 6.565 9 C 0.089 3.911 10 H 0.125 0.875 11 C -0.132 4.132 12 C -0.195 4.195 13 C -0.162 4.162 14 N -0.484 5.484 15 C 0.022 3.978 16 C -0.118 4.118 17 C -0.123 4.123 18 C 0.028 3.972 19 C -0.134 4.134 20 C 0.184 3.816 21 N -0.611 5.611 22 C -0.233 4.233 23 H 0.083 0.917 24 C -0.064 4.064 25 N -0.950 5.950 26 Si 0.975 3.025 27 H -0.287 1.287 28 H -0.265 1.265 29 H -0.299 1.299 30 H 0.046 0.954 31 H 0.069 0.931 32 H 0.030 0.970 33 H 0.410 0.590 34 H 0.135 0.865 35 H 0.069 0.931 36 H 0.106 0.894 37 H 0.120 0.880 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.083 0.917 43 H 0.050 0.950 44 H 0.084 0.916 45 H 0.032 0.968 46 H 0.088 0.912 47 H 0.062 0.938 48 H 0.073 0.927 49 H 0.034 0.966 50 H -0.007 1.007 51 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.222 9.652 -21.250 23.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.044 3.956 3 H 0.072 0.928 4 C 0.050 3.950 5 H 0.092 0.908 6 N -0.356 5.356 7 C 0.282 3.718 8 O -0.444 6.444 9 C -0.024 4.024 10 H 0.142 0.858 11 C -0.150 4.150 12 C -0.232 4.232 13 C -0.200 4.200 14 N -0.206 5.206 15 C -0.106 4.106 16 C -0.156 4.156 17 C -0.161 4.161 18 C -0.100 4.100 19 C -0.174 4.174 20 C 0.058 3.942 21 N -0.336 5.336 22 C -0.362 4.362 23 H 0.101 0.899 24 C -0.257 4.257 25 N -0.598 5.598 26 Si 0.804 3.196 27 H -0.214 1.214 28 H -0.190 1.190 29 H -0.226 1.226 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.049 0.951 33 H 0.247 0.753 34 H 0.153 0.847 35 H 0.088 0.912 36 H 0.124 0.876 37 H 0.138 0.862 38 H 0.111 0.889 39 H 0.103 0.897 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.101 0.899 43 H 0.069 0.931 44 H 0.102 0.898 45 H 0.051 0.949 46 H 0.106 0.894 47 H 0.081 0.919 48 H 0.091 0.909 49 H 0.053 0.947 50 H 0.011 0.989 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.082 9.210 -21.644 23.614 hybrid contribution -0.165 -0.869 2.333 2.495 sum 1.918 8.341 -19.311 21.122 Atomic orbital electron populations 1.22103 0.96895 1.00370 1.01041 1.21225 0.93237 0.95192 0.85917 0.92828 1.21606 0.95814 0.90817 0.86717 0.90786 1.46215 1.67590 1.16125 1.05696 1.22160 0.75382 0.90047 0.84222 1.90655 1.50200 1.21156 1.82430 1.21737 0.96284 0.97574 0.86805 0.85771 1.22083 0.89228 1.05014 0.98709 1.23108 1.02255 0.93458 1.04346 1.23146 1.03035 0.96862 0.96932 1.65256 1.02817 1.30112 1.22426 1.23468 0.97739 0.90994 0.98368 1.22428 0.93853 1.00542 0.98764 1.22274 0.98427 0.97028 0.98385 1.22971 0.89860 0.98277 0.98886 1.23098 0.97879 0.99919 0.96454 1.21022 0.93599 0.88750 0.90827 1.44699 1.58609 1.29425 1.00916 1.19337 1.36337 0.98840 0.81717 0.89883 1.25667 1.02630 0.95419 1.01992 1.70160 1.53481 1.04590 1.31572 0.85104 0.77720 0.77038 0.79747 1.21425 1.18986 1.22583 0.93478 0.91226 0.95085 0.75272 0.84673 0.91222 0.87561 0.86199 0.88935 0.89749 0.92332 0.91309 0.89878 0.93131 0.89756 0.94914 0.89368 0.91933 0.90862 0.94729 0.98896 0.94416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.28 9.14 71.98 0.66 -4.62 16 2 C 0.15 5.79 3.48 45.34 0.16 5.95 16 3 H 0.05 1.89 7.72 -2.39 -0.02 1.87 16 4 C 0.16 5.41 2.81 46.18 0.13 5.54 16 5 H 0.07 2.88 7.33 -2.38 -0.02 2.86 16 6 N -0.70 -18.25 4.76 -436.94 -2.08 -20.33 16 7 C 0.50 12.92 3.25 87.65 0.29 13.21 16 8 O -0.57 -18.85 11.85 -3.01 -0.04 -18.89 16 9 C 0.09 1.75 2.81 44.17 0.12 1.88 16 10 H 0.12 2.01 8.14 -2.39 -0.02 2.00 16 11 C -0.13 -2.19 4.68 -10.79 -0.05 -2.24 16 12 C -0.19 -3.86 9.72 30.62 0.30 -3.56 16 13 C -0.16 -2.53 9.94 30.62 0.30 -2.22 16 14 N -0.48 -10.05 5.37 -862.24 -4.63 -14.68 16 15 C 0.02 0.47 5.27 86.65 0.46 0.92 16 16 C -0.12 -2.24 7.06 31.80 0.22 -2.02 16 17 C -0.12 -2.50 6.93 31.47 0.22 -2.29 16 18 C 0.03 0.61 6.07 86.45 0.52 1.14 16 19 C -0.13 -5.16 6.76 31.91 0.22 -4.95 16 20 C 0.18 9.16 5.38 86.78 0.47 9.62 16 21 N -0.61 -30.31 3.13 -668.69 -2.09 -32.40 16 22 C -0.23 -12.65 9.83 84.03 0.83 -11.82 16 23 H 0.08 4.28 7.85 -2.91 -0.02 4.26 16 24 C -0.06 -3.57 5.39 84.86 0.46 -3.12 16 25 N -0.95 -57.19 10.76 21.65 0.23 -56.95 16 26 Si 0.98 45.19 29.56 68.60 2.03 47.22 16 27 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 28 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 29 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 30 H 0.05 1.78 8.03 -2.39 -0.02 1.76 16 31 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.41 8.58 6.78 -92.71 -0.63 7.95 16 34 H 0.14 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.07 1.85 6.46 -2.39 -0.02 1.84 16 36 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.09 1.50 6.17 -2.38 -0.01 1.48 16 39 H 0.08 1.60 7.90 -2.39 -0.02 1.58 16 40 H 0.06 1.64 5.33 -2.39 -0.01 1.63 16 41 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.08 1.37 8.14 -2.38 -0.02 1.36 16 45 H 0.03 0.89 5.46 -2.39 -0.01 0.87 16 46 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 48 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 49 H 0.03 1.92 7.07 -2.39 -0.02 1.90 16 50 H -0.01 -0.39 8.03 -2.39 -0.02 -0.41 16 51 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -66.77 383.55 -1.00 -67.77 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: 0.28 Total: 26.84 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: 5.30 Total: 1.43 kcal Atomic # 7 Polarization: -115.80 SS G_CDS: -8.57 Total: -124.37 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.04 Total: -18.89 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -66.77 -1.00 -67.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088770208.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.629 kcal (2) G-P(sol) polarization free energy of solvation -66.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds