Wall clock time and date at job start Fri Apr 10 2020 18:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46899 * 110.99527 * 2 1 4 4 C 1.46898 * 110.99828 * 123.95243 * 2 1 3 5 5 C 1.50696 * 112.85423 * 294.25212 * 4 2 1 6 6 O 1.21283 * 120.00285 * 266.64247 * 5 4 2 7 7 N 1.34777 * 119.99872 * 86.63914 * 5 4 2 8 8 C 1.47192 * 126.70100 * 5.14783 * 7 5 4 9 9 C 1.55053 * 106.47425 * 211.67769 * 8 7 5 10 10 H 1.08997 * 112.74866 * 103.27379 * 9 8 7 11 11 C 1.54880 * 108.94809 * 229.45236 * 9 8 7 12 12 N 1.48330 * 104.11318 * 136.88535 * 11 9 8 13 13 C 1.36941 * 128.19597 * 138.16407 * 12 11 9 14 14 H 1.08000 * 119.99712 * 348.46868 * 13 12 11 15 15 C 1.38804 * 120.00206 * 168.19910 * 13 12 11 16 16 N 1.31631 * 119.99926 * 353.36953 * 15 13 12 17 17 Si 1.86800 * 120.00213 * 173.36935 * 15 13 12 18 18 H 1.48493 * 109.46933 * 90.00087 * 17 15 13 19 19 H 1.48500 * 109.47142 * 209.99812 * 17 15 13 20 20 H 1.48499 * 109.46951 * 329.99688 * 17 15 13 21 21 C 1.48323 * 103.60452 * 317.89790 * 12 11 9 22 22 C 1.54455 * 104.32651 * 42.06720 * 21 12 11 23 23 C 1.52999 * 112.29567 * 96.98634 * 22 21 12 24 24 C 1.47192 * 126.70393 * 185.19377 * 7 5 4 25 25 C 1.53780 * 113.68980 * 65.52537 * 4 2 1 26 26 C 1.53787 * 87.08102 * 89.12619 * 25 4 2 27 27 C 1.53774 * 87.08398 * 25.42993 * 26 25 4 28 28 H 1.08995 * 109.47066 * 297.46749 * 1 2 3 29 29 H 1.08994 * 109.46998 * 57.47223 * 1 2 3 30 30 H 1.09004 * 109.46806 * 177.46757 * 1 2 3 31 31 H 1.09006 * 109.46942 * 183.95143 * 3 2 1 32 32 H 1.08997 * 109.47345 * 303.95423 * 3 2 1 33 33 H 1.09001 * 109.47224 * 63.95894 * 3 2 1 34 34 H 1.09000 * 110.06758 * 330.64504 * 8 7 5 35 35 H 1.09000 * 110.06902 * 92.16416 * 8 7 5 36 36 H 1.09008 * 110.58900 * 18.22795 * 11 9 8 37 37 H 1.08998 * 110.53374 * 255.51638 * 11 9 8 38 38 H 0.97000 * 120.00097 * 179.97438 * 16 15 13 39 39 H 1.09004 * 110.46626 * 160.78138 * 21 12 11 40 40 H 1.09007 * 110.46416 * 283.22609 * 21 12 11 41 41 H 1.08993 * 109.47654 * 61.02094 * 23 22 21 42 42 H 1.09003 * 109.46556 * 181.02181 * 23 22 21 43 43 H 1.09006 * 109.47195 * 301.01194 * 23 22 21 44 44 H 1.09002 * 110.06795 * 29.34916 * 24 7 5 45 45 H 1.09007 * 110.06332 * 267.83384 * 24 7 5 46 46 H 1.09002 * 113.61283 * 203.67097 * 25 4 2 47 47 H 1.08998 * 113.61606 * 334.57396 * 25 4 2 48 48 H 1.09007 * 113.60781 * 270.88112 * 26 25 4 49 49 H 1.08998 * 113.69453 * 139.99360 * 26 25 4 50 50 H 1.08993 * 113.62022 * 220.01995 * 27 26 25 51 51 H 1.09007 * 113.69032 * 89.12555 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.6726 -0.1350 2.4675 6 8 2.4647 0.6218 2.9879 7 7 0.5037 -0.4118 3.0786 8 6 -0.5117 -1.3816 2.6372 9 6 -1.8841 -0.8159 3.0852 10 1 -2.4454 -0.3715 2.2634 11 6 -2.6711 -1.9290 3.8204 12 7 -3.2585 -1.2406 4.9957 13 6 -4.5187 -1.3766 5.5142 14 1 -5.2778 -1.9052 4.9567 15 6 -4.8188 -0.8399 6.7586 16 7 -3.8635 -0.3159 7.4971 17 14 -6.5784 -0.8614 7.3854 18 1 -6.8182 -2.1151 8.1442 19 1 -6.8011 0.3062 8.2754 20 1 -7.5146 -0.7924 6.2347 21 6 -2.1558 -0.3752 5.4803 22 6 -1.5395 0.2154 4.1931 23 6 -2.0798 1.6119 3.8787 24 6 -0.0073 0.1975 4.3173 25 6 1.6722 -2.2680 1.0737 26 6 2.9822 -2.4363 0.2859 27 6 3.4746 -1.1580 0.9845 28 1 -0.3633 0.4740 0.9118 29 1 -0.3633 0.5526 -0.8664 30 1 -0.3633 -1.0267 -0.0454 31 1 3.0828 1.3433 -0.0708 32 1 1.5897 1.9163 -0.8524 33 1 1.7043 1.8723 0.9233 34 1 -0.4889 -1.4792 1.5518 35 1 -0.3319 -2.3500 3.1041 36 1 -1.9994 -2.7253 4.1415 37 1 -3.4577 -2.3280 3.1800 38 1 -4.0733 0.0595 8.3666 39 1 -2.5463 0.4200 6.1155 40 1 -1.4174 -0.9663 6.0222 41 1 -1.8322 2.2897 4.6956 42 1 -1.6297 1.9761 2.9552 43 1 -3.1625 1.5647 3.7612 44 1 0.3717 1.2145 4.4179 45 1 0.2911 -0.4002 5.1787 46 1 1.6820 -2.7586 2.0470 47 1 0.7799 -2.4983 0.4915 48 1 2.8608 -2.3258 -0.7917 49 1 3.5461 -3.3281 0.5591 50 1 4.0374 -0.4920 0.3305 51 1 3.9775 -1.3436 1.9337 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091735306.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:29 Heat of formation + Delta-G solvation = 41.712547 kcal Electronic energy + Delta-G solvation = -29969.338112 eV Core-core repulsion = 26291.896978 eV Total energy + Delta-G solvation = -3677.441134 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.22777 -39.28332 -37.48568 -35.23069 -35.01110 -32.54370 -31.39319 -29.57330 -28.25373 -27.37606 -26.27022 -25.55554 -25.20844 -24.98030 -23.09236 -22.49745 -20.56060 -20.07436 -18.60764 -18.29875 -17.38432 -16.75130 -16.12632 -15.97690 -15.19030 -14.95346 -14.72051 -14.57856 -14.26623 -14.03054 -13.74251 -13.55807 -13.27528 -12.80116 -12.68787 -12.53587 -12.42098 -12.22617 -12.08116 -11.97008 -11.81018 -11.64105 -11.49154 -11.31689 -11.19890 -10.94467 -10.86240 -10.79322 -10.76550 -10.37282 -10.19911 -10.03073 -10.01810 -9.83002 -9.82052 -9.57426 -8.75782 -8.48289 -8.42754 -6.93699 -5.79933 -3.16948 2.62041 3.11238 3.35135 3.40774 3.42444 3.63187 4.19647 4.41412 4.48890 4.53394 4.65852 4.84370 4.90431 4.99764 5.10569 5.22743 5.26509 5.37368 5.40624 5.47059 5.51537 5.57598 5.58290 5.61207 5.64446 5.66385 5.74499 5.75839 5.83354 5.88629 5.90529 6.00636 6.02808 6.09231 6.13131 6.21426 6.26360 6.31043 6.45158 6.61618 6.67289 6.71209 6.74212 6.78835 6.90982 7.25300 7.50308 7.70466 7.72637 8.19438 8.24822 9.06864 9.70057 10.45738 11.30886 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.025688 B = 0.003463 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.757077 B = 8083.257962 C = 8234.954188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 N -0.502 5.502 3 C 0.020 3.980 4 C 0.067 3.933 5 C 0.513 3.487 6 O -0.546 6.546 7 N -0.606 5.606 8 C 0.092 3.908 9 C -0.108 4.108 10 H 0.084 0.916 11 C 0.133 3.867 12 N -0.594 5.594 13 C -0.223 4.223 14 H 0.078 0.922 15 C -0.007 4.007 16 N -0.917 5.917 17 Si 0.912 3.088 18 H -0.288 1.288 19 H -0.290 1.290 20 H -0.281 1.281 21 C 0.159 3.841 22 C -0.094 4.094 23 C -0.115 4.115 24 C 0.116 3.884 25 C -0.129 4.129 26 C -0.128 4.128 27 C -0.107 4.107 28 H 0.041 0.959 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.033 0.967 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.027 0.973 37 H 0.049 0.951 38 H 0.254 0.746 39 H 0.105 0.895 40 H 0.019 0.981 41 H 0.052 0.948 42 H 0.037 0.963 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.089 0.911 47 H 0.081 0.919 48 H 0.089 0.911 49 H 0.068 0.932 50 H 0.077 0.923 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.708 -1.291 -15.673 19.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 N -0.226 5.226 3 C -0.127 4.127 4 C -0.026 4.026 5 C 0.299 3.701 6 O -0.422 6.422 7 N -0.339 5.339 8 C -0.031 4.031 9 C -0.128 4.128 10 H 0.102 0.898 11 C 0.006 3.994 12 N -0.316 5.316 13 C -0.351 4.351 14 H 0.095 0.905 15 C -0.203 4.203 16 N -0.564 5.564 17 Si 0.742 3.258 18 H -0.215 1.215 19 H -0.216 1.216 20 H -0.206 1.206 21 C 0.033 3.967 22 C -0.097 4.097 23 C -0.172 4.172 24 C -0.007 4.007 25 C -0.167 4.167 26 C -0.165 4.165 27 C -0.145 4.145 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.052 0.948 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.045 0.955 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.123 0.877 40 H 0.037 0.963 41 H 0.071 0.929 42 H 0.056 0.944 43 H 0.082 0.918 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.108 0.892 47 H 0.099 0.901 48 H 0.107 0.893 49 H 0.086 0.914 50 H 0.095 0.905 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.194 -1.040 -15.639 19.260 hybrid contribution -1.230 0.428 1.246 1.803 sum 9.964 -0.611 -14.392 17.515 Atomic orbital electron populations 1.22760 0.86871 1.02636 1.01751 1.62261 1.08325 1.14393 1.37615 1.22421 1.01223 0.88088 1.01018 1.22551 0.99037 0.94656 0.86352 1.21081 0.80147 0.81901 0.86943 1.90672 1.47353 1.37415 1.66775 1.48768 1.18234 1.40766 1.26142 1.22919 0.87570 0.92191 1.00443 1.23413 0.94111 0.97578 0.97744 0.89795 1.21906 0.95046 0.92401 0.90094 1.45078 1.10275 1.45728 1.30555 1.19010 0.85196 1.31722 0.99167 0.90465 1.24827 0.97832 1.01685 0.95982 1.69802 1.30279 1.44642 1.11695 0.86122 0.83869 0.77243 0.78530 1.21540 1.21592 1.20627 1.21969 0.88716 0.95248 0.90758 1.22536 0.92329 0.95538 0.99292 1.21533 1.01336 0.94720 0.99660 1.22240 0.93659 0.98575 0.86225 1.23196 0.99389 0.92698 1.01400 1.22730 0.96288 0.97370 1.00158 1.22813 0.92884 0.97446 1.01353 0.94049 0.90862 0.90482 0.90916 0.91068 0.94796 0.90119 0.91168 0.95542 0.93276 0.93561 0.87660 0.96285 0.92857 0.94403 0.91815 0.91142 0.91261 0.89247 0.90067 0.89274 0.91357 0.90458 0.89448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 7.91 60.07 0.47 0.55 16 2 N -0.50 -5.55 4.81 -235.80 -1.13 -6.68 16 3 C 0.02 0.23 9.17 60.06 0.55 0.78 16 4 C 0.07 0.80 0.24 -131.94 -0.03 0.77 16 5 C 0.51 7.92 5.19 -10.99 -0.06 7.87 16 6 O -0.55 -10.28 16.54 5.55 0.09 -10.19 16 7 N -0.61 -9.24 2.83 -170.84 -0.48 -9.72 16 8 C 0.09 1.23 4.10 -2.58 -0.01 1.22 16 9 C -0.11 -1.72 3.83 -87.36 -0.33 -2.05 16 10 H 0.08 1.28 7.93 -51.93 -0.41 0.87 16 11 C 0.13 2.51 6.79 -2.04 -0.01 2.50 16 12 N -0.59 -14.25 3.38 -168.21 -0.57 -14.82 16 13 C -0.22 -5.92 10.40 -15.06 -0.16 -6.08 16 14 H 0.08 1.98 7.84 -52.49 -0.41 1.57 16 15 C -0.01 -0.18 5.45 -17.43 -0.09 -0.28 16 16 N -0.92 -26.01 10.56 55.49 0.59 -25.42 16 17 Si 0.91 21.39 29.56 -169.99 -5.02 16.37 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 C 0.16 3.62 5.23 -2.27 -0.01 3.61 16 22 C -0.09 -1.69 1.07 -152.18 -0.16 -1.85 16 23 C -0.12 -1.98 8.57 37.16 0.32 -1.66 16 24 C 0.12 1.98 6.19 -3.28 -0.02 1.96 16 25 C -0.13 -1.29 5.02 -25.92 -0.13 -1.42 16 26 C -0.13 -1.13 7.99 -25.92 -0.21 -1.34 16 27 C -0.11 -1.15 6.92 -25.92 -0.18 -1.33 16 28 H 0.04 0.51 6.22 -51.93 -0.32 0.19 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.72 5.21 -51.93 -0.27 0.45 16 31 H 0.07 0.78 7.08 -51.93 -0.37 0.41 16 32 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 33 H 0.03 0.46 6.94 -51.93 -0.36 0.10 16 34 H 0.08 0.91 2.76 -51.93 -0.14 0.77 16 35 H 0.07 0.94 6.98 -51.93 -0.36 0.58 16 36 H 0.03 0.50 7.20 -51.92 -0.37 0.13 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 39 H 0.11 2.73 5.80 -51.93 -0.30 2.43 16 40 H 0.02 0.46 7.18 -51.92 -0.37 0.09 16 41 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.07 1.25 7.67 -51.93 -0.40 0.85 16 45 H 0.07 1.25 7.11 -51.93 -0.37 0.88 16 46 H 0.09 0.93 7.62 -51.93 -0.40 0.53 16 47 H 0.08 0.74 6.04 -51.93 -0.31 0.42 16 48 H 0.09 0.75 8.14 -51.92 -0.42 0.33 16 49 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 50 H 0.08 0.80 7.17 -51.93 -0.37 0.43 16 51 H 0.09 1.01 8.09 -51.93 -0.42 0.59 16 LS Contribution 371.33 15.07 5.60 5.60 Total: -1.00 -30.24 371.33 -9.49 -39.73 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -8.48 Total: 1.90 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -0.07 Total: 3.24 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -1.60 Total: -56.65 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.19 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.24 -9.49 -39.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091735306.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.441 kcal (2) G-P(sol) polarization free energy of solvation -30.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds