Wall clock time and date at job start Fri Apr 10 2020 18:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46899 * 110.99527 * 2 1 4 4 C 1.46898 * 110.99828 * 123.95243 * 2 1 3 5 5 C 1.50696 * 112.85423 * 294.25212 * 4 2 1 6 6 O 1.21283 * 120.00285 * 266.64247 * 5 4 2 7 7 N 1.34777 * 119.99872 * 86.63914 * 5 4 2 8 8 C 1.47192 * 126.70100 * 5.14783 * 7 5 4 9 9 C 1.55053 * 106.47425 * 211.67769 * 8 7 5 10 10 H 1.08997 * 112.74866 * 103.27379 * 9 8 7 11 11 C 1.54880 * 108.94809 * 229.45236 * 9 8 7 12 12 N 1.48330 * 104.11318 * 136.88535 * 11 9 8 13 13 C 1.36941 * 128.19597 * 138.16407 * 12 11 9 14 14 H 1.08000 * 119.99712 * 348.46868 * 13 12 11 15 15 C 1.38804 * 120.00206 * 168.19910 * 13 12 11 16 16 N 1.31631 * 119.99926 * 353.36953 * 15 13 12 17 17 Si 1.86800 * 120.00213 * 173.36935 * 15 13 12 18 18 H 1.48493 * 109.46933 * 90.00087 * 17 15 13 19 19 H 1.48500 * 109.47142 * 209.99812 * 17 15 13 20 20 H 1.48499 * 109.46951 * 329.99688 * 17 15 13 21 21 C 1.48323 * 103.60452 * 317.89790 * 12 11 9 22 22 C 1.54455 * 104.32651 * 42.06720 * 21 12 11 23 23 C 1.52999 * 112.29567 * 96.98634 * 22 21 12 24 24 C 1.47192 * 126.70393 * 185.19377 * 7 5 4 25 25 C 1.53780 * 113.68980 * 65.52537 * 4 2 1 26 26 C 1.53787 * 87.08102 * 89.12619 * 25 4 2 27 27 C 1.53774 * 87.08398 * 25.42993 * 26 25 4 28 28 H 1.08995 * 109.47066 * 297.46749 * 1 2 3 29 29 H 1.08994 * 109.46998 * 57.47223 * 1 2 3 30 30 H 1.09004 * 109.46806 * 177.46757 * 1 2 3 31 31 H 1.09006 * 109.46942 * 183.95143 * 3 2 1 32 32 H 1.08997 * 109.47345 * 303.95423 * 3 2 1 33 33 H 1.09001 * 109.47224 * 63.95894 * 3 2 1 34 34 H 1.09000 * 110.06758 * 330.64504 * 8 7 5 35 35 H 1.09000 * 110.06902 * 92.16416 * 8 7 5 36 36 H 1.09008 * 110.58900 * 18.22795 * 11 9 8 37 37 H 1.08998 * 110.53374 * 255.51638 * 11 9 8 38 38 H 0.97000 * 120.00097 * 179.97438 * 16 15 13 39 39 H 1.09004 * 110.46626 * 160.78138 * 21 12 11 40 40 H 1.09007 * 110.46416 * 283.22609 * 21 12 11 41 41 H 1.08993 * 109.47654 * 61.02094 * 23 22 21 42 42 H 1.09003 * 109.46556 * 181.02181 * 23 22 21 43 43 H 1.09006 * 109.47195 * 301.01194 * 23 22 21 44 44 H 1.09002 * 110.06795 * 29.34916 * 24 7 5 45 45 H 1.09007 * 110.06332 * 267.83384 * 24 7 5 46 46 H 1.09002 * 113.61283 * 203.67097 * 25 4 2 47 47 H 1.08998 * 113.61606 * 334.57396 * 25 4 2 48 48 H 1.09007 * 113.60781 * 270.88112 * 26 25 4 49 49 H 1.08998 * 113.69453 * 139.99360 * 26 25 4 50 50 H 1.08993 * 113.62022 * 220.01995 * 27 26 25 51 51 H 1.09007 * 113.69032 * 89.12555 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.6726 -0.1350 2.4675 6 8 2.4647 0.6218 2.9879 7 7 0.5037 -0.4118 3.0786 8 6 -0.5117 -1.3816 2.6372 9 6 -1.8841 -0.8159 3.0852 10 1 -2.4454 -0.3715 2.2634 11 6 -2.6711 -1.9290 3.8204 12 7 -3.2585 -1.2406 4.9957 13 6 -4.5187 -1.3766 5.5142 14 1 -5.2778 -1.9052 4.9567 15 6 -4.8188 -0.8399 6.7586 16 7 -3.8635 -0.3159 7.4971 17 14 -6.5784 -0.8614 7.3854 18 1 -6.8182 -2.1151 8.1442 19 1 -6.8011 0.3062 8.2754 20 1 -7.5146 -0.7924 6.2347 21 6 -2.1558 -0.3752 5.4803 22 6 -1.5395 0.2154 4.1931 23 6 -2.0798 1.6119 3.8787 24 6 -0.0073 0.1975 4.3173 25 6 1.6722 -2.2680 1.0737 26 6 2.9822 -2.4363 0.2859 27 6 3.4746 -1.1580 0.9845 28 1 -0.3633 0.4740 0.9118 29 1 -0.3633 0.5526 -0.8664 30 1 -0.3633 -1.0267 -0.0454 31 1 3.0828 1.3433 -0.0708 32 1 1.5897 1.9163 -0.8524 33 1 1.7043 1.8723 0.9233 34 1 -0.4889 -1.4792 1.5518 35 1 -0.3319 -2.3500 3.1041 36 1 -1.9994 -2.7253 4.1415 37 1 -3.4577 -2.3280 3.1800 38 1 -4.0733 0.0595 8.3666 39 1 -2.5463 0.4200 6.1155 40 1 -1.4174 -0.9663 6.0222 41 1 -1.8322 2.2897 4.6956 42 1 -1.6297 1.9761 2.9552 43 1 -3.1625 1.5647 3.7612 44 1 0.3717 1.2145 4.4179 45 1 0.2911 -0.4002 5.1787 46 1 1.6820 -2.7586 2.0470 47 1 0.7799 -2.4983 0.4915 48 1 2.8608 -2.3258 -0.7917 49 1 3.5461 -3.3281 0.5591 50 1 4.0374 -0.4920 0.3305 51 1 3.9775 -1.3436 1.9337 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091735306.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:28 Heat of formation + Delta-G solvation = 22.535464 kcal Electronic energy + Delta-G solvation = -29970.169693 eV Core-core repulsion = 26291.896978 eV Total energy + Delta-G solvation = -3678.272715 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.33003 -40.60157 -38.70843 -36.65495 -35.99528 -34.27680 -32.98847 -31.15927 -29.19525 -28.50502 -27.95287 -26.71104 -26.58286 -26.04948 -24.24447 -23.75926 -22.21139 -21.11602 -19.99498 -19.43325 -18.79628 -18.29365 -17.20174 -17.15057 -16.73486 -16.25279 -16.01456 -15.72237 -15.58731 -15.27300 -15.07912 -14.92434 -14.59517 -14.17632 -13.99152 -13.83397 -13.44720 -13.40774 -13.28162 -13.08970 -13.04596 -12.92472 -12.73759 -12.65722 -12.61063 -12.42786 -12.25038 -12.23013 -11.89533 -11.71726 -11.66633 -11.53817 -11.50793 -11.23543 -11.14298 -10.95723 -10.74645 -9.76789 -9.43977 -8.88757 -7.84197 -5.22284 1.42920 1.48192 1.48848 1.57732 1.89750 2.50313 2.75246 3.29904 3.33004 3.35682 3.45521 3.65745 3.71742 3.89442 3.92332 3.95221 4.11354 4.13338 4.20587 4.29872 4.39561 4.42708 4.47724 4.56567 4.59142 4.61977 4.68901 4.75185 4.79106 4.81984 4.86907 4.88418 4.93674 4.98184 5.03233 5.09636 5.12830 5.16499 5.19561 5.22521 5.24321 5.41997 5.43242 5.46034 5.53500 5.76320 5.82949 5.91223 6.24311 6.50792 7.01917 7.04017 7.72655 8.50088 9.25709 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.025688 B = 0.003463 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.757077 B = 8083.257962 C = 8234.954188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 N -0.492 5.492 3 C 0.022 3.978 4 C 0.064 3.936 5 C 0.510 3.490 6 O -0.586 6.586 7 N -0.604 5.604 8 C 0.101 3.899 9 C -0.094 4.094 10 H 0.102 0.898 11 C 0.130 3.870 12 N -0.618 5.618 13 C -0.229 4.229 14 H 0.086 0.914 15 C -0.064 4.064 16 N -0.949 5.949 17 Si 0.975 3.025 18 H -0.288 1.288 19 H -0.298 1.298 20 H -0.267 1.267 21 C 0.167 3.833 22 C -0.085 4.085 23 C -0.107 4.107 24 C 0.122 3.878 25 C -0.127 4.127 26 C -0.111 4.111 27 C -0.113 4.113 28 H 0.021 0.979 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.004 0.996 34 H 0.112 0.888 35 H 0.077 0.923 36 H 0.031 0.969 37 H 0.064 0.936 38 H 0.246 0.754 39 H 0.068 0.932 40 H -0.006 1.006 41 H 0.045 0.955 42 H 0.059 0.941 43 H 0.049 0.951 44 H 0.060 0.940 45 H 0.054 0.946 46 H 0.085 0.915 47 H 0.099 0.901 48 H 0.100 0.900 49 H 0.082 0.918 50 H 0.079 0.921 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.482 -2.616 -19.102 21.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 N -0.215 5.215 3 C -0.126 4.126 4 C -0.029 4.029 5 C 0.298 3.702 6 O -0.465 6.465 7 N -0.336 5.336 8 C -0.021 4.021 9 C -0.115 4.115 10 H 0.120 0.880 11 C 0.004 3.996 12 N -0.341 5.341 13 C -0.357 4.357 14 H 0.103 0.897 15 C -0.257 4.257 16 N -0.598 5.598 17 Si 0.803 3.197 18 H -0.215 1.215 19 H -0.225 1.225 20 H -0.192 1.192 21 C 0.040 3.960 22 C -0.087 4.087 23 C -0.164 4.164 24 C -0.002 4.002 25 C -0.165 4.165 26 C -0.148 4.148 27 C -0.151 4.151 28 H 0.039 0.961 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.092 0.908 32 H 0.111 0.889 33 H 0.022 0.978 34 H 0.130 0.870 35 H 0.095 0.905 36 H 0.049 0.951 37 H 0.082 0.918 38 H 0.056 0.944 39 H 0.087 0.913 40 H 0.012 0.988 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.072 0.928 46 H 0.103 0.897 47 H 0.117 0.883 48 H 0.119 0.881 49 H 0.101 0.899 50 H 0.098 0.902 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.965 -2.397 -19.123 22.173 hybrid contribution -1.106 0.847 2.314 2.701 sum 9.859 -1.549 -16.809 19.548 Atomic orbital electron populations 1.22860 0.86176 1.03738 1.01569 1.62364 1.08897 1.14028 1.36252 1.22436 1.01524 0.88224 1.00382 1.22758 1.00140 0.95683 0.84340 1.21945 0.79262 0.81122 0.87865 1.90648 1.48576 1.39245 1.68046 1.48803 1.18727 1.40862 1.25249 1.22950 0.85342 0.91543 1.02286 1.23319 0.95349 0.95776 0.97051 0.87967 1.22105 0.95678 0.93079 0.88700 1.45345 1.09942 1.46929 1.31867 1.19410 0.86558 1.30610 0.99165 0.89666 1.25602 1.01296 1.02252 0.96572 1.70029 1.32005 1.46095 1.11702 0.85136 0.79983 0.76566 0.77994 1.21510 1.22462 1.19160 1.21712 0.88051 0.93873 0.92343 1.22321 0.92389 0.96365 0.97672 1.21440 1.00421 0.94132 1.00445 1.21965 0.93160 0.97984 0.87073 1.23245 1.00920 0.90547 1.01770 1.22672 0.95173 0.96619 1.00357 1.22865 0.92194 0.98906 1.01156 0.96062 0.89098 0.88846 0.90813 0.88905 0.97757 0.87016 0.90534 0.95122 0.91799 0.94435 0.91340 0.98776 0.93625 0.92161 0.93169 0.92149 0.92819 0.89682 0.88303 0.88135 0.89914 0.90212 0.90831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.07 7.91 127.69 1.01 1.07 16 2 N -0.49 -9.37 4.81 -899.94 -4.33 -13.69 16 3 C 0.02 0.45 9.17 127.69 1.17 1.63 16 4 C 0.06 1.38 0.24 3.31 0.00 1.38 16 5 C 0.51 15.33 5.19 87.66 0.45 15.79 16 6 O -0.59 -22.38 16.54 -3.04 -0.05 -22.43 16 7 N -0.60 -17.82 2.83 -812.81 -2.30 -20.12 16 8 C 0.10 2.45 4.10 86.95 0.36 2.81 16 9 C -0.09 -2.83 3.83 -8.68 -0.03 -2.86 16 10 H 0.10 2.77 7.93 -2.39 -0.02 2.75 16 11 C 0.13 4.72 6.79 86.67 0.59 5.31 16 12 N -0.62 -29.86 3.38 -686.09 -2.32 -32.17 16 13 C -0.23 -12.20 10.40 84.03 0.87 -11.32 16 14 H 0.09 4.30 7.84 -2.91 -0.02 4.28 16 15 C -0.06 -3.54 5.45 84.86 0.46 -3.08 16 16 N -0.95 -55.99 10.56 21.65 0.23 -55.76 16 17 Si 0.97 44.56 29.56 68.60 2.03 46.59 16 18 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 19 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 20 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 21 C 0.17 7.86 5.23 86.52 0.45 8.31 16 22 C -0.08 -3.06 1.07 -50.67 -0.05 -3.11 16 23 C -0.11 -3.68 8.57 71.98 0.62 -3.07 16 24 C 0.12 4.26 6.19 86.50 0.54 4.80 16 25 C -0.13 -2.08 5.02 31.12 0.16 -1.92 16 26 C -0.11 -1.55 7.99 31.12 0.25 -1.30 16 27 C -0.11 -2.22 6.92 31.12 0.22 -2.01 16 28 H 0.02 0.45 6.22 -2.39 -0.01 0.44 16 29 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.09 1.26 5.21 -2.38 -0.01 1.25 16 31 H 0.07 1.47 7.08 -2.38 -0.02 1.45 16 32 H 0.09 1.46 8.13 -2.39 -0.02 1.44 16 33 H 0.00 0.10 6.94 -2.39 -0.02 0.08 16 34 H 0.11 2.06 2.76 -2.39 -0.01 2.05 16 35 H 0.08 1.84 6.98 -2.39 -0.02 1.82 16 36 H 0.03 1.11 7.20 -2.38 -0.02 1.09 16 37 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 39 H 0.07 3.76 5.80 -2.38 -0.01 3.74 16 40 H -0.01 -0.29 7.18 -2.38 -0.02 -0.30 16 41 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 44 H 0.06 2.23 7.67 -2.39 -0.02 2.21 16 45 H 0.05 2.04 7.11 -2.38 -0.02 2.02 16 46 H 0.08 1.50 7.62 -2.39 -0.02 1.49 16 47 H 0.10 1.28 6.04 -2.39 -0.01 1.27 16 48 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 49 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.08 1.51 7.17 -2.39 -0.02 1.49 16 51 H 0.07 1.65 8.09 -2.38 -0.02 1.63 16 Total: -1.00 -68.28 371.33 1.23 -67.05 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 0.92 Total: 18.12 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: 7.06 Total: 12.43 kcal Atomic # 7 Polarization: -113.03 SS G_CDS: -8.72 Total: -121.75 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.05 Total: -22.43 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -68.28 1.23 -67.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091735306.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.587 kcal (2) G-P(sol) polarization free energy of solvation -68.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds