Wall clock time and date at job start Fri Apr 10 2020 18:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46847 * 111.00144 * 2 1 4 4 C 1.53044 * 109.51335 * 185.83239 * 3 2 1 5 5 C 1.53117 * 109.27792 * 300.82256 * 4 3 2 6 6 C 1.53127 * 109.15989 * 57.65607 * 5 4 3 7 7 C 1.46830 * 110.98168 * 124.21418 * 2 1 3 8 8 H 1.09004 * 109.46459 * 294.16736 * 7 2 1 9 9 C 1.50695 * 109.46943 * 54.14037 * 7 2 1 10 10 O 1.21280 * 119.99661 * 20.04820 * 9 7 2 11 11 N 1.34773 * 119.99823 * 200.05087 * 9 7 2 12 12 C 1.47211 * 126.70616 * 359.68688 * 11 9 7 13 13 C 1.54100 * 106.21433 * 148.64040 * 12 11 9 14 14 H 1.08991 * 112.45175 * 141.26803 * 13 12 11 15 15 C 1.53777 * 109.54709 * 266.31633 * 13 12 11 16 16 N 1.47218 * 106.38090 * 131.54295 * 15 13 12 17 17 C 1.36934 * 126.70285 * 148.71665 * 16 15 13 18 18 H 1.08003 * 119.99607 * 179.97438 * 17 16 15 19 19 C 1.38802 * 120.00419 * 359.97438 * 17 16 15 20 20 N 1.31625 * 119.99993 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00481 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46686 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47539 * 119.99695 * 21 19 17 24 24 H 1.48499 * 109.47211 * 240.00397 * 21 19 17 25 25 C 1.47221 * 106.59106 * 328.72111 * 16 15 13 26 26 C 1.53783 * 106.37695 * 31.27202 * 25 16 15 27 27 C 1.53003 * 112.60314 * 103.51527 * 26 25 16 28 28 C 1.47221 * 126.69746 * 179.97438 * 11 9 7 29 29 H 1.09001 * 109.46924 * 56.04691 * 1 2 3 30 30 H 1.09000 * 109.46915 * 176.04679 * 1 2 3 31 31 H 1.08999 * 109.47074 * 296.04862 * 1 2 3 32 32 H 1.09002 * 109.46448 * 65.81961 * 3 2 1 33 33 H 1.08994 * 109.45958 * 305.84326 * 3 2 1 34 34 H 1.09001 * 109.49858 * 60.76701 * 4 3 2 35 35 H 1.09000 * 109.49965 * 180.88251 * 4 3 2 36 36 H 1.08997 * 109.52073 * 177.56286 * 5 4 3 37 37 H 1.09004 * 109.52347 * 297.75632 * 5 4 3 38 38 H 1.08997 * 109.50037 * 62.28538 * 6 5 4 39 39 H 1.09000 * 109.49970 * 182.40199 * 6 5 4 40 40 H 1.09005 * 110.07046 * 267.95947 * 12 11 9 41 41 H 1.08998 * 110.07362 * 29.49464 * 12 11 9 42 42 H 1.09003 * 110.07334 * 250.77241 * 15 13 12 43 43 H 1.09000 * 110.07658 * 12.31502 * 15 13 12 44 44 H 0.96993 * 120.00235 * 180.02562 * 20 19 17 45 45 H 1.08991 * 110.07392 * 272.04023 * 25 16 15 46 46 H 1.09000 * 110.06936 * 150.49714 * 25 16 15 47 47 H 1.09005 * 109.46871 * 182.59828 * 27 26 25 48 48 H 1.08991 * 109.47223 * 302.60603 * 27 26 25 49 49 H 1.09004 * 109.46515 * 62.60705 * 27 26 25 50 50 H 1.08995 * 110.07791 * 330.50063 * 28 11 9 51 51 H 1.09004 * 110.06938 * 92.04027 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5183 1.3339 -0.1466 5 6 4.1186 0.5366 1.0146 6 6 3.5176 -0.8718 1.0210 7 6 1.9948 -0.7709 1.1337 8 1 1.7320 -0.2709 2.0660 9 6 1.3975 -2.1543 1.1205 10 8 0.9167 -2.5975 0.0991 11 7 1.3977 -2.8991 2.2437 12 6 1.9437 -2.5132 3.5553 13 6 1.0713 -3.2215 4.6098 14 1 1.6551 -3.5909 5.4528 15 6 -0.0555 -2.2783 5.0630 16 7 -1.3015 -3.0598 5.0003 17 6 -2.3999 -2.9148 5.8050 18 1 -3.2613 -3.5505 5.6626 19 6 -2.4063 -1.9508 6.8037 20 7 -1.3563 -1.1764 6.9776 21 14 -3.9050 -1.7525 7.9010 22 1 -4.9435 -2.7365 7.5029 23 1 -3.5174 -1.9860 9.3154 24 1 -4.4458 -0.3771 7.7565 25 6 -1.1358 -4.0277 3.9034 26 6 0.3626 -4.3691 3.8490 27 6 0.6764 -5.7378 4.4566 28 6 0.8570 -4.2598 2.3972 29 1 -0.3633 0.5740 -0.8525 30 1 -0.3633 -1.0252 -0.0708 31 1 -0.3633 0.4513 0.9233 32 1 1.7325 1.8609 0.9375 33 1 1.5636 1.9256 -0.8331 34 1 3.7814 0.8564 -1.0905 35 1 3.9102 2.3508 -0.1308 36 1 5.1995 0.4708 0.8909 37 1 3.8884 1.0351 1.9563 38 1 3.7809 -1.3840 0.0955 39 1 3.9093 -1.4307 1.8710 40 1 2.9795 -2.8418 3.6406 41 1 1.8818 -1.4325 3.6829 42 1 0.1251 -1.9434 6.0845 43 1 -0.1177 -1.4206 4.3931 44 1 -1.3605 -0.5031 7.6757 45 1 -1.4526 -3.5823 2.9605 46 1 -1.7172 -4.9269 4.1071 47 1 1.7529 -5.9074 4.4334 48 1 0.3261 -5.7663 5.4883 49 1 0.1738 -6.5148 3.8805 50 1 0.0275 -4.4129 1.7069 51 1 1.6391 -4.9962 2.2122 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091787822.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:36 Heat of formation + Delta-G solvation = 1.321956 kcal Electronic energy + Delta-G solvation = -29607.834785 eV Core-core repulsion = 25928.642184 eV Total energy + Delta-G solvation = -3679.192602 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.61864 -39.23328 -37.46085 -35.00189 -33.54078 -32.90058 -31.30578 -30.75826 -30.00375 -27.14853 -26.35860 -25.78264 -25.13473 -23.73483 -22.88541 -22.28895 -20.29946 -20.06808 -19.11255 -18.50722 -17.04354 -16.68911 -15.91769 -15.66499 -15.21523 -14.80785 -14.75190 -14.44679 -14.25260 -13.90864 -13.65997 -13.61344 -13.33845 -13.11289 -12.89065 -12.62020 -12.54545 -12.09474 -12.05767 -11.78948 -11.66297 -11.64163 -11.43289 -11.32767 -11.01787 -10.95277 -10.94035 -10.82826 -10.78891 -10.51112 -10.14733 -10.09957 -9.99918 -9.79364 -9.53046 -9.35351 -8.76570 -8.38380 -8.28036 -6.92291 -5.69585 -3.14179 2.80562 3.09797 3.35672 3.41769 3.43799 3.93105 4.42973 4.50637 4.65538 4.79026 4.86235 4.89469 5.03290 5.08108 5.18590 5.23434 5.39948 5.45822 5.48188 5.50044 5.53047 5.57657 5.57996 5.64572 5.72327 5.73714 5.78802 5.81652 5.90166 5.94904 5.97217 5.99454 6.04061 6.15811 6.19166 6.23413 6.28649 6.36237 6.42420 6.52612 6.63747 6.78497 6.89974 6.97458 7.06571 7.38198 7.56464 7.75900 7.80788 8.33820 8.41678 9.15959 9.76746 10.44514 11.31746 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.014117 B = 0.004079 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.957235 B = 6862.696703 C = 7737.068458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.520 5.520 3 C 0.055 3.945 4 C -0.118 4.118 5 C -0.120 4.120 6 C -0.105 4.105 7 C 0.073 3.927 8 H 0.064 0.936 9 C 0.538 3.462 10 O -0.531 6.531 11 N -0.609 5.609 12 C 0.109 3.891 13 C -0.116 4.116 14 H 0.087 0.913 15 C 0.145 3.855 16 N -0.595 5.595 17 C -0.216 4.216 18 H 0.079 0.921 19 C -0.012 4.012 20 N -0.923 5.923 21 Si 0.915 3.085 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.291 1.291 25 C 0.145 3.855 26 C -0.087 4.087 27 C -0.121 4.121 28 C 0.121 3.879 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.024 0.976 32 H 0.034 0.966 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.076 0.924 42 H 0.123 0.877 43 H 0.004 0.996 44 H 0.252 0.748 45 H 0.018 0.982 46 H 0.043 0.957 47 H 0.050 0.950 48 H 0.064 0.936 49 H 0.052 0.948 50 H 0.077 0.923 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.057 0.852 -9.587 15.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.245 5.245 3 C -0.073 4.073 4 C -0.155 4.155 5 C -0.157 4.157 6 C -0.143 4.143 7 C -0.038 4.038 8 H 0.082 0.918 9 C 0.326 3.674 10 O -0.407 6.407 11 N -0.342 5.342 12 C -0.015 4.015 13 C -0.137 4.137 14 H 0.106 0.894 15 C 0.019 3.981 16 N -0.318 5.318 17 C -0.345 4.345 18 H 0.097 0.903 19 C -0.207 4.207 20 N -0.572 5.572 21 Si 0.746 3.254 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.218 1.218 25 C 0.018 3.982 26 C -0.089 4.089 27 C -0.179 4.179 28 C -0.002 4.002 29 H 0.086 0.914 30 H 0.107 0.893 31 H 0.042 0.958 32 H 0.053 0.947 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.141 0.859 43 H 0.022 0.978 44 H 0.063 0.937 45 H 0.035 0.965 46 H 0.061 0.939 47 H 0.069 0.931 48 H 0.083 0.917 49 H 0.071 0.929 50 H 0.095 0.905 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.817 0.584 -10.470 15.799 hybrid contribution -1.083 0.618 1.342 1.832 sum 10.734 1.203 -9.128 14.142 Atomic orbital electron populations 1.22587 0.86381 1.04323 1.00099 1.61674 1.08471 1.12791 1.41611 1.22145 0.95559 0.88866 1.00745 1.21609 0.94495 1.00074 0.99372 1.21581 0.99992 0.95248 0.98898 1.21517 0.91711 0.97975 1.03103 1.21550 0.96243 0.92126 0.93926 0.91840 1.19966 0.79120 0.86374 0.81968 1.90647 1.46262 1.72577 1.31229 1.48473 1.58922 1.16871 1.09974 1.22271 0.96660 1.00409 0.82121 1.23164 0.98006 0.96487 0.96007 0.89426 1.21966 0.82333 0.90023 1.03786 1.44513 1.14767 1.37858 1.34678 1.19157 0.92507 1.14594 1.08197 0.90320 1.24753 0.98136 0.98262 0.99555 1.69599 1.28281 1.24201 1.35117 0.85980 0.81656 0.77508 0.80280 1.20509 1.21693 1.21776 1.21418 0.91595 0.93288 0.91873 1.22160 0.98042 0.95708 0.93008 1.21610 1.00389 0.94568 1.01322 1.22048 0.98315 0.82920 0.96927 0.91422 0.89288 0.95774 0.94738 0.90422 0.90980 0.91432 0.91327 0.91827 0.90549 0.90970 0.92035 0.90570 0.85941 0.97807 0.93726 0.96452 0.93897 0.93063 0.91655 0.92912 0.90481 0.92089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.10 60.07 0.55 0.75 16 2 N -0.52 -7.39 4.51 -236.34 -1.07 -8.46 16 3 C 0.05 0.62 5.47 -3.83 -0.02 0.59 16 4 C -0.12 -1.10 6.09 -26.65 -0.16 -1.27 16 5 C -0.12 -1.12 6.00 -26.61 -0.16 -1.28 16 6 C -0.10 -1.20 5.36 -26.65 -0.14 -1.34 16 7 C 0.07 1.04 1.67 -68.89 -0.11 0.93 16 8 H 0.06 0.94 6.90 -51.93 -0.36 0.58 16 9 C 0.54 9.11 6.31 -10.99 -0.07 9.04 16 10 O -0.53 -10.51 14.76 5.56 0.08 -10.43 16 11 N -0.61 -9.83 3.32 -171.40 -0.57 -10.40 16 12 C 0.11 1.61 5.78 -3.08 -0.02 1.60 16 13 C -0.12 -2.04 3.68 -88.66 -0.33 -2.36 16 14 H 0.09 1.46 7.88 -51.93 -0.41 1.05 16 15 C 0.14 3.33 5.71 -3.25 -0.02 3.31 16 16 N -0.59 -14.87 3.39 -171.13 -0.58 -15.45 16 17 C -0.22 -5.91 10.34 -15.06 -0.16 -6.07 16 18 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 19 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 20 N -0.92 -26.05 10.08 55.49 0.56 -25.49 16 21 Si 0.92 21.73 29.55 -169.99 -5.02 16.70 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 C 0.15 3.02 6.38 -3.24 -0.02 3.00 16 26 C -0.09 -1.46 1.09 -152.73 -0.17 -1.63 16 27 C -0.12 -1.73 8.49 37.16 0.32 -1.41 16 28 C 0.12 1.92 5.95 -3.26 -0.02 1.90 16 29 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 30 H 0.09 1.56 5.62 -51.93 -0.29 1.27 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.79 8.09 -51.93 -0.42 0.37 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 0.76 7.72 -51.93 -0.40 0.36 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.08 1.14 6.15 -51.93 -0.32 0.82 16 42 H 0.12 3.19 5.44 -51.93 -0.28 2.91 16 43 H 0.00 0.10 7.42 -51.93 -0.39 -0.28 16 44 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 45 H 0.02 0.39 7.39 -51.93 -0.38 0.01 16 46 H 0.04 0.87 7.85 -51.93 -0.41 0.46 16 47 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.08 1.32 7.28 -51.93 -0.38 0.94 16 51 H 0.06 0.85 7.87 -51.93 -0.41 0.45 16 LS Contribution 379.24 15.07 5.72 5.72 Total: -1.00 -30.94 379.24 -10.57 -41.51 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -9.06 Total: 0.97 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -0.63 Total: 5.32 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: -1.66 Total: -59.80 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.08 Total: -10.43 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.94 -10.57 -41.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091787822.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.835 kcal (2) G-P(sol) polarization free energy of solvation -30.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds