Wall clock time and date at job start Fri Apr 10 2020 18:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46847 * 111.00144 * 2 1 4 4 C 1.53044 * 109.51335 * 185.83239 * 3 2 1 5 5 C 1.53117 * 109.27792 * 300.82256 * 4 3 2 6 6 C 1.53127 * 109.15989 * 57.65607 * 5 4 3 7 7 C 1.46830 * 110.98168 * 124.21418 * 2 1 3 8 8 H 1.09004 * 109.46459 * 294.16736 * 7 2 1 9 9 C 1.50695 * 109.46943 * 54.14037 * 7 2 1 10 10 O 1.21280 * 119.99661 * 20.04820 * 9 7 2 11 11 N 1.34773 * 119.99823 * 200.05087 * 9 7 2 12 12 C 1.47211 * 126.70616 * 359.68688 * 11 9 7 13 13 C 1.54100 * 106.21433 * 148.64040 * 12 11 9 14 14 H 1.08991 * 112.45175 * 141.26803 * 13 12 11 15 15 C 1.53777 * 109.54709 * 266.31633 * 13 12 11 16 16 N 1.47218 * 106.38090 * 131.54295 * 15 13 12 17 17 C 1.36934 * 126.70285 * 148.71665 * 16 15 13 18 18 H 1.08003 * 119.99607 * 179.97438 * 17 16 15 19 19 C 1.38802 * 120.00419 * 359.97438 * 17 16 15 20 20 N 1.31625 * 119.99993 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00481 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46686 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47539 * 119.99695 * 21 19 17 24 24 H 1.48499 * 109.47211 * 240.00397 * 21 19 17 25 25 C 1.47221 * 106.59106 * 328.72111 * 16 15 13 26 26 C 1.53783 * 106.37695 * 31.27202 * 25 16 15 27 27 C 1.53003 * 112.60314 * 103.51527 * 26 25 16 28 28 C 1.47221 * 126.69746 * 179.97438 * 11 9 7 29 29 H 1.09001 * 109.46924 * 56.04691 * 1 2 3 30 30 H 1.09000 * 109.46915 * 176.04679 * 1 2 3 31 31 H 1.08999 * 109.47074 * 296.04862 * 1 2 3 32 32 H 1.09002 * 109.46448 * 65.81961 * 3 2 1 33 33 H 1.08994 * 109.45958 * 305.84326 * 3 2 1 34 34 H 1.09001 * 109.49858 * 60.76701 * 4 3 2 35 35 H 1.09000 * 109.49965 * 180.88251 * 4 3 2 36 36 H 1.08997 * 109.52073 * 177.56286 * 5 4 3 37 37 H 1.09004 * 109.52347 * 297.75632 * 5 4 3 38 38 H 1.08997 * 109.50037 * 62.28538 * 6 5 4 39 39 H 1.09000 * 109.49970 * 182.40199 * 6 5 4 40 40 H 1.09005 * 110.07046 * 267.95947 * 12 11 9 41 41 H 1.08998 * 110.07362 * 29.49464 * 12 11 9 42 42 H 1.09003 * 110.07334 * 250.77241 * 15 13 12 43 43 H 1.09000 * 110.07658 * 12.31502 * 15 13 12 44 44 H 0.96993 * 120.00235 * 180.02562 * 20 19 17 45 45 H 1.08991 * 110.07392 * 272.04023 * 25 16 15 46 46 H 1.09000 * 110.06936 * 150.49714 * 25 16 15 47 47 H 1.09005 * 109.46871 * 182.59828 * 27 26 25 48 48 H 1.08991 * 109.47223 * 302.60603 * 27 26 25 49 49 H 1.09004 * 109.46515 * 62.60705 * 27 26 25 50 50 H 1.08995 * 110.07791 * 330.50063 * 28 11 9 51 51 H 1.09004 * 110.06938 * 92.04027 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5183 1.3339 -0.1466 5 6 4.1186 0.5366 1.0146 6 6 3.5176 -0.8718 1.0210 7 6 1.9948 -0.7709 1.1337 8 1 1.7320 -0.2709 2.0660 9 6 1.3975 -2.1543 1.1205 10 8 0.9167 -2.5975 0.0991 11 7 1.3977 -2.8991 2.2437 12 6 1.9437 -2.5132 3.5553 13 6 1.0713 -3.2215 4.6098 14 1 1.6551 -3.5909 5.4528 15 6 -0.0555 -2.2783 5.0630 16 7 -1.3015 -3.0598 5.0003 17 6 -2.3999 -2.9148 5.8050 18 1 -3.2613 -3.5505 5.6626 19 6 -2.4063 -1.9508 6.8037 20 7 -1.3563 -1.1764 6.9776 21 14 -3.9050 -1.7525 7.9010 22 1 -4.9435 -2.7365 7.5029 23 1 -3.5174 -1.9860 9.3154 24 1 -4.4458 -0.3771 7.7565 25 6 -1.1358 -4.0277 3.9034 26 6 0.3626 -4.3691 3.8490 27 6 0.6764 -5.7378 4.4566 28 6 0.8570 -4.2598 2.3972 29 1 -0.3633 0.5740 -0.8525 30 1 -0.3633 -1.0252 -0.0708 31 1 -0.3633 0.4513 0.9233 32 1 1.7325 1.8609 0.9375 33 1 1.5636 1.9256 -0.8331 34 1 3.7814 0.8564 -1.0905 35 1 3.9102 2.3508 -0.1308 36 1 5.1995 0.4708 0.8909 37 1 3.8884 1.0351 1.9563 38 1 3.7809 -1.3840 0.0955 39 1 3.9093 -1.4307 1.8710 40 1 2.9795 -2.8418 3.6406 41 1 1.8818 -1.4325 3.6829 42 1 0.1251 -1.9434 6.0845 43 1 -0.1177 -1.4206 4.3931 44 1 -1.3605 -0.5031 7.6757 45 1 -1.4526 -3.5823 2.9605 46 1 -1.7172 -4.9269 4.1071 47 1 1.7529 -5.9074 4.4334 48 1 0.3261 -5.7663 5.4883 49 1 0.1738 -6.5148 3.8805 50 1 0.0275 -4.4129 1.7069 51 1 1.6391 -4.9962 2.2122 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091787822.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:34 Heat of formation + Delta-G solvation = -18.208828 kcal Electronic energy + Delta-G solvation = -29608.681704 eV Core-core repulsion = 25928.642184 eV Total energy + Delta-G solvation = -3680.039520 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.92037 -40.51833 -38.70203 -36.65764 -34.70317 -34.33091 -32.75767 -32.04122 -31.61380 -28.24630 -27.91299 -27.24488 -26.71793 -24.92326 -23.98153 -23.66412 -22.00987 -21.01248 -20.44684 -19.85722 -18.83232 -18.11750 -17.12034 -17.02861 -16.72948 -16.21568 -15.97992 -15.58588 -15.56223 -15.40439 -15.10300 -15.04821 -14.61083 -14.11285 -14.00734 -13.91771 -13.77308 -13.46333 -13.41123 -13.24245 -13.19210 -12.97641 -12.82509 -12.72450 -12.63597 -12.39552 -12.26998 -11.99092 -11.88827 -11.83229 -11.64016 -11.55308 -11.45439 -11.35095 -11.18308 -10.83146 -10.62809 -9.68389 -9.40951 -8.95072 -7.77909 -5.26039 1.44890 1.45425 1.50516 1.55591 1.88400 2.46363 2.85281 3.26206 3.31521 3.47981 3.63527 3.77408 3.84287 3.91462 3.96050 4.00474 4.12533 4.21739 4.26240 4.28478 4.35647 4.39136 4.44244 4.54815 4.61466 4.69709 4.73077 4.73716 4.75139 4.81780 4.85659 4.90976 4.92575 4.98518 5.03060 5.06364 5.16107 5.17925 5.19558 5.21596 5.31997 5.43576 5.44513 5.51029 5.58745 5.80334 5.84850 6.03545 6.34028 6.51119 7.08450 7.11176 7.74015 8.41772 9.20735 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.014117 B = 0.004079 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.957235 B = 6862.696703 C = 7737.068458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.531 5.531 3 C 0.051 3.949 4 C -0.114 4.114 5 C -0.116 4.116 6 C -0.100 4.100 7 C 0.076 3.924 8 H 0.055 0.945 9 C 0.531 3.469 10 O -0.566 6.566 11 N -0.613 5.613 12 C 0.115 3.885 13 C -0.107 4.107 14 H 0.106 0.894 15 C 0.151 3.849 16 N -0.617 5.617 17 C -0.237 4.237 18 H 0.077 0.923 19 C -0.062 4.062 20 N -0.945 5.945 21 Si 0.978 3.022 22 H -0.270 1.270 23 H -0.286 1.286 24 H -0.294 1.294 25 C 0.142 3.858 26 C -0.076 4.076 27 C -0.114 4.114 28 C 0.123 3.877 29 H 0.086 0.914 30 H 0.058 0.942 31 H 0.011 0.989 32 H 0.031 0.969 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.106 0.894 41 H 0.071 0.929 42 H 0.094 0.906 43 H -0.028 1.028 44 H 0.248 0.752 45 H -0.005 1.005 46 H 0.045 0.955 47 H 0.083 0.917 48 H 0.048 0.952 49 H 0.067 0.933 50 H 0.057 0.943 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.405 0.397 -9.649 17.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.256 5.256 3 C -0.076 4.076 4 C -0.151 4.151 5 C -0.154 4.154 6 C -0.138 4.138 7 C -0.036 4.036 8 H 0.072 0.928 9 C 0.320 3.680 10 O -0.445 6.445 11 N -0.345 5.345 12 C -0.008 4.008 13 C -0.128 4.128 14 H 0.124 0.876 15 C 0.025 3.975 16 N -0.341 5.341 17 C -0.365 4.365 18 H 0.095 0.905 19 C -0.254 4.254 20 N -0.595 5.595 21 Si 0.807 3.193 22 H -0.195 1.195 23 H -0.213 1.213 24 H -0.222 1.222 25 C 0.016 3.984 26 C -0.078 4.078 27 C -0.172 4.172 28 C 0.001 3.999 29 H 0.105 0.895 30 H 0.077 0.923 31 H 0.029 0.971 32 H 0.049 0.951 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.104 0.896 40 H 0.124 0.876 41 H 0.089 0.911 42 H 0.111 0.889 43 H -0.010 1.010 44 H 0.058 0.942 45 H 0.013 0.987 46 H 0.064 0.936 47 H 0.101 0.899 48 H 0.067 0.933 49 H 0.086 0.914 50 H 0.076 0.924 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 14.184 0.114 -10.533 17.668 hybrid contribution -1.908 0.785 1.328 2.454 sum 12.276 0.900 -9.205 15.370 Atomic orbital electron populations 1.22457 0.87581 1.02480 1.00266 1.61736 1.07586 1.14630 1.41657 1.22300 0.97209 0.87137 1.01004 1.21621 0.92709 1.01522 0.99287 1.21602 1.01174 0.93668 0.98953 1.21546 0.89294 0.99677 1.03261 1.21606 0.98160 0.90294 0.93517 0.92779 1.20508 0.78602 0.87230 0.81619 1.90623 1.47850 1.73474 1.32600 1.48585 1.58681 1.17011 1.10250 1.22316 0.98037 1.00017 0.80384 1.23043 0.96678 0.95582 0.97470 0.87575 1.21757 0.83834 0.90462 1.01411 1.44810 1.14971 1.38952 1.35342 1.19468 0.93506 1.14789 1.08765 0.90486 1.25534 1.00817 0.98158 1.00893 1.69851 1.29721 1.24467 1.35431 0.85011 0.78771 0.77129 0.78432 1.19473 1.21273 1.22170 1.21544 0.95002 0.92276 0.89579 1.22083 0.94574 0.97156 0.93955 1.21577 1.02636 0.92833 1.00125 1.22060 0.98738 0.83688 0.95460 0.89537 0.92333 0.97054 0.95109 0.89374 0.91192 0.89078 0.89015 0.91641 0.91302 0.89628 0.87644 0.91073 0.88879 1.00995 0.94151 0.98702 0.93641 0.89858 0.93320 0.91406 0.92441 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 9.10 127.69 1.16 1.80 16 2 N -0.53 -15.04 4.51 -901.63 -4.06 -19.10 16 3 C 0.05 1.08 5.47 86.33 0.47 1.55 16 4 C -0.11 -1.85 6.09 30.65 0.19 -1.66 16 5 C -0.12 -1.85 6.00 30.68 0.18 -1.67 16 6 C -0.10 -2.08 5.36 30.65 0.16 -1.91 16 7 C 0.08 2.14 1.67 44.19 0.07 2.21 16 8 H 0.05 1.62 6.90 -2.38 -0.02 1.60 16 9 C 0.53 18.05 6.31 87.66 0.55 18.61 16 10 O -0.57 -22.99 14.76 -3.03 -0.04 -23.03 16 11 N -0.61 -19.24 3.32 -814.57 -2.70 -21.94 16 12 C 0.12 3.20 5.78 86.62 0.50 3.70 16 13 C -0.11 -3.65 3.68 -9.53 -0.04 -3.68 16 14 H 0.11 3.27 7.88 -2.39 -0.02 3.25 16 15 C 0.15 7.17 5.71 86.50 0.49 7.67 16 16 N -0.62 -31.88 3.39 -695.33 -2.36 -34.23 16 17 C -0.24 -13.30 10.34 84.03 0.87 -12.43 16 18 H 0.08 4.22 7.83 -2.91 -0.02 4.19 16 19 C -0.06 -3.45 5.49 84.86 0.47 -2.98 16 20 N -0.94 -54.90 10.08 21.65 0.22 -54.69 16 21 Si 0.98 45.37 29.55 68.60 2.03 47.40 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 24 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 25 C 0.14 6.06 6.38 86.51 0.55 6.61 16 26 C -0.08 -2.45 1.09 -51.03 -0.06 -2.51 16 27 C -0.11 -2.93 8.49 71.98 0.61 -2.32 16 28 C 0.12 3.74 5.95 86.50 0.51 4.25 16 29 H 0.09 2.28 8.10 -2.39 -0.02 2.26 16 30 H 0.06 2.19 5.62 -2.39 -0.01 2.17 16 31 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.09 1.67 8.09 -2.39 -0.02 1.65 16 34 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.09 1.54 7.72 -2.39 -0.02 1.52 16 40 H 0.11 2.12 8.14 -2.38 -0.02 2.10 16 41 H 0.07 2.08 6.15 -2.39 -0.01 2.07 16 42 H 0.09 5.03 5.44 -2.39 -0.01 5.02 16 43 H -0.03 -1.46 7.42 -2.39 -0.02 -1.48 16 44 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 45 H 0.00 -0.22 7.39 -2.39 -0.02 -0.24 16 46 H 0.05 1.88 7.85 -2.39 -0.02 1.86 16 47 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 48 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 50 H 0.06 1.98 7.28 -2.39 -0.02 1.96 16 51 H 0.09 2.29 7.87 -2.39 -0.02 2.27 16 Total: -1.00 -70.84 379.24 0.68 -70.16 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.89 Total: 18.21 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: 6.71 Total: 17.23 kcal Atomic # 7 Polarization: -121.06 SS G_CDS: -8.91 Total: -129.96 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.04 Total: -23.03 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -70.84 0.68 -70.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091787822.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.954 kcal (2) G-P(sol) polarization free energy of solvation -70.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds