Wall clock time and date at job start Fri Apr 10 2020 18:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46842 * 110.99706 * 2 1 4 4 C 1.53037 * 109.51999 * 185.83858 * 3 2 1 5 5 C 1.53124 * 109.27733 * 300.82030 * 4 3 2 6 6 C 1.50705 * 109.52062 * 177.56324 * 5 4 3 7 7 O 1.21277 * 120.00226 * 0.12351 * 6 5 4 8 8 N 1.34773 * 119.99694 * 180.12737 * 6 5 4 9 9 C 1.48117 * 127.84541 * 359.97098 * 8 6 5 10 10 C 1.54319 * 104.71037 * 219.80304 * 9 8 6 11 11 H 1.09003 * 112.91898 * 98.44122 * 10 9 8 12 12 C 1.53766 * 109.07563 * 223.73602 * 10 9 8 13 13 N 1.47198 * 106.45439 * 93.17583 * 12 10 9 14 14 C 1.36934 * 126.70664 * 211.35399 * 13 12 10 15 15 H 1.08004 * 119.99978 * 162.11416 * 14 13 12 16 16 C 1.38806 * 119.99865 * 342.12444 * 14 13 12 17 17 N 1.31618 * 120.00356 * 159.78781 * 16 14 13 18 18 Si 1.86804 * 119.99946 * 339.78381 * 16 14 13 19 19 H 1.48498 * 109.46835 * 84.69024 * 18 16 14 20 20 H 1.48497 * 109.46991 * 204.68504 * 18 16 14 21 21 H 1.48495 * 109.47174 * 324.69080 * 18 16 14 22 22 C 1.47344 * 106.52118 * 31.33699 * 13 12 10 23 23 C 1.53757 * 106.42378 * 328.67006 * 22 13 12 24 24 C 1.52991 * 112.06781 * 141.00459 * 23 22 13 25 25 C 1.48114 * 127.84488 * 179.97438 * 8 6 5 26 26 C 1.53120 * 109.21425 * 57.62393 * 5 4 3 27 27 C 1.46854 * 110.99677 * 124.20936 * 2 1 3 28 28 H 1.09003 * 109.47149 * 60.00253 * 1 2 3 29 29 H 1.09005 * 109.47380 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47532 * 299.99663 * 1 2 3 31 31 H 1.09002 * 109.46094 * 65.82360 * 3 2 1 32 32 H 1.08992 * 109.46509 * 305.85287 * 3 2 1 33 33 H 1.09003 * 109.50369 * 180.88195 * 4 3 2 34 34 H 1.08997 * 109.53824 * 60.77638 * 4 3 2 35 35 H 1.09003 * 109.52393 * 297.68456 * 5 4 3 36 36 H 1.08998 * 110.38781 * 100.99521 * 9 8 6 37 37 H 1.08994 * 110.38703 * 338.61024 * 9 8 6 38 38 H 1.08998 * 110.06437 * 212.43730 * 12 10 9 39 39 H 1.09002 * 110.06762 * 333.91404 * 12 10 9 40 40 H 0.96996 * 120.00642 * 180.02562 * 17 16 14 41 41 H 1.09007 * 110.05375 * 209.43765 * 22 13 12 42 42 H 1.08995 * 110.07112 * 87.91855 * 22 13 12 43 43 H 1.09004 * 109.47440 * 301.82900 * 24 23 22 44 44 H 1.09001 * 109.47291 * 61.83113 * 24 23 22 45 45 H 1.09005 * 109.47293 * 181.82998 * 24 23 22 46 46 H 1.09002 * 110.38948 * 21.38663 * 25 8 6 47 47 H 1.09001 * 110.48322 * 259.05598 * 25 8 6 48 48 H 1.09003 * 109.50279 * 62.31663 * 26 5 4 49 49 H 1.09001 * 109.50162 * 182.43722 * 26 5 4 50 50 H 1.09003 * 109.45794 * 294.17799 * 27 2 1 51 51 H 1.08997 * 109.45945 * 54.14262 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 -0.1467 5 6 4.1187 0.5369 1.0145 6 6 5.6133 0.4464 0.8432 7 8 6.1471 0.9696 -0.1118 8 7 6.3566 -0.2162 1.7515 9 6 5.8909 -0.9132 2.9726 10 6 6.9554 -0.5857 4.0408 11 1 6.6595 0.2318 4.6982 12 6 7.2907 -1.8652 4.8249 13 7 8.4533 -2.4716 4.1560 14 6 8.7438 -3.8070 4.0704 15 1 9.4449 -4.1608 3.3289 16 6 8.1371 -4.7062 4.9366 17 7 8.0863 -5.9848 4.6285 18 14 7.3929 -4.1015 6.5397 19 1 6.0113 -3.6166 6.2921 20 1 7.3579 -5.2158 7.5206 21 1 8.2176 -2.9914 7.0807 22 6 9.2419 -1.3598 3.5966 23 6 8.2374 -0.2537 3.2338 24 6 8.7774 1.1412 3.5554 25 6 7.8246 -0.4126 1.7551 26 6 3.5182 -0.8716 1.0225 27 6 1.9952 -0.7708 1.1338 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.7324 1.8608 0.9376 32 1 1.5634 1.9257 -0.8329 33 1 3.9099 2.3512 -0.1310 34 1 3.7819 0.8570 -1.0905 35 1 3.8896 1.0360 1.9560 36 1 5.8433 -1.9886 2.8012 37 1 4.9164 -0.5330 3.2786 38 1 7.5402 -1.6170 5.8565 39 1 6.4445 -2.5519 4.7998 40 1 7.6620 -6.6130 5.2336 41 1 9.7729 -1.6902 2.7038 42 1 9.9502 -0.9928 4.3393 43 1 9.0201 1.2012 4.6164 44 1 9.6751 1.3281 2.9662 45 1 8.0216 1.8883 3.3129 46 1 8.3108 0.3458 1.1414 47 1 8.0769 -1.4101 1.3954 48 1 3.7815 -1.3847 0.0976 49 1 3.9101 -1.4294 1.8731 50 1 1.7323 -0.2708 2.0661 51 1 1.5633 -1.7715 1.1243 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091974900.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:41 Heat of formation + Delta-G solvation = -20.631584 kcal Electronic energy + Delta-G solvation = -29169.136777 eV Core-core repulsion = 25488.992198 eV Total energy + Delta-G solvation = -3680.144579 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.87258 -40.47862 -39.03925 -36.67927 -34.88404 -34.24419 -33.02146 -31.84294 -31.70351 -28.75359 -27.96309 -27.09309 -26.92312 -24.53377 -24.08716 -23.55150 -22.36263 -21.13131 -20.42251 -19.98324 -18.69110 -17.99034 -17.40315 -17.12655 -16.60993 -16.25226 -16.14425 -16.03196 -15.54861 -15.48403 -15.17746 -14.86488 -14.51999 -14.40393 -14.18831 -13.94932 -13.85269 -13.56453 -13.45488 -13.34646 -13.21376 -13.16589 -12.84245 -12.58094 -12.57496 -12.33455 -12.28071 -12.12432 -12.04716 -11.84521 -11.72106 -11.57611 -11.49501 -11.34815 -11.24728 -10.90566 -10.70669 -9.79198 -9.25981 -9.06130 -8.13892 -5.42358 1.31348 1.43554 1.51530 1.55397 1.91556 2.43691 2.98805 3.07208 3.24076 3.34362 3.48139 3.61216 3.70985 3.79178 3.82810 4.12331 4.14538 4.16625 4.21795 4.28299 4.33891 4.37466 4.43235 4.54935 4.56228 4.63428 4.66302 4.71239 4.72393 4.76287 4.80160 4.83196 4.86569 4.88948 4.91994 4.96084 5.05480 5.06276 5.08188 5.14149 5.16322 5.21235 5.29668 5.34714 5.44064 5.68841 6.12360 6.12797 6.14733 6.55020 6.76075 7.08443 7.54713 8.14244 9.06060 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.014369 B = 0.003958 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.220133 B = 7072.358812 C = 8276.614443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.565 5.565 3 C 0.062 3.938 4 C -0.091 4.091 5 C -0.094 4.094 6 C 0.535 3.465 7 O -0.585 6.585 8 N -0.615 5.615 9 C 0.113 3.887 10 C -0.099 4.099 11 H 0.124 0.876 12 C 0.108 3.892 13 N -0.621 5.621 14 C -0.228 4.228 15 H 0.055 0.945 16 C -0.038 4.038 17 N -0.961 5.961 18 Si 0.948 3.052 19 H -0.260 1.260 20 H -0.314 1.314 21 H -0.265 1.265 22 C 0.140 3.860 23 C -0.075 4.075 24 C -0.116 4.116 25 C 0.123 3.877 26 C -0.111 4.111 27 C 0.062 3.938 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.033 0.967 31 H 0.047 0.953 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.116 0.884 36 H 0.059 0.941 37 H 0.110 0.890 38 H 0.032 0.968 39 H 0.052 0.948 40 H 0.262 0.738 41 H 0.043 0.957 42 H 0.038 0.962 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.077 0.923 47 H 0.051 0.949 48 H 0.054 0.946 49 H 0.081 0.919 50 H 0.050 0.950 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.371 18.706 -3.102 23.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.290 5.290 3 C -0.066 4.066 4 C -0.129 4.129 5 C -0.115 4.115 6 C 0.326 3.674 7 O -0.465 6.465 8 N -0.347 5.347 9 C -0.010 4.010 10 C -0.119 4.119 11 H 0.142 0.858 12 C -0.017 4.017 13 N -0.347 5.347 14 C -0.357 4.357 15 H 0.073 0.927 16 C -0.232 4.232 17 N -0.608 5.608 18 Si 0.776 3.224 19 H -0.186 1.186 20 H -0.243 1.243 21 H -0.190 1.190 22 C 0.014 3.986 23 C -0.077 4.077 24 C -0.174 4.174 25 C 0.000 4.000 26 C -0.149 4.149 27 C -0.066 4.066 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.134 0.866 36 H 0.077 0.923 37 H 0.128 0.872 38 H 0.050 0.950 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.096 0.904 47 H 0.069 0.931 48 H 0.073 0.927 49 H 0.099 0.901 50 H 0.068 0.932 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.017 18.556 -4.096 23.613 hybrid contribution 0.081 -0.537 1.272 1.383 sum -13.936 18.019 -2.824 22.953 Atomic orbital electron populations 1.22375 0.85821 1.02633 1.01303 1.61902 1.08932 1.14235 1.43937 1.22083 0.93780 0.89059 1.01650 1.21349 0.94740 0.99912 0.96948 1.21354 0.88561 0.99147 1.02482 1.20838 0.89950 0.76268 0.80321 1.90657 1.74834 1.49034 1.31983 1.49075 1.08201 1.52574 1.24837 1.22618 0.98777 0.96617 0.82943 1.23013 0.94622 0.97762 0.96530 0.85776 1.21911 0.90516 0.93942 0.95347 1.44856 1.23767 1.01354 1.64694 1.18526 1.23738 0.80819 1.12601 0.92675 1.25624 1.00972 0.94862 1.01784 1.69955 1.49109 1.03592 1.38179 0.85948 0.79478 0.76341 0.80640 1.18586 1.24266 1.19020 1.21585 0.93147 0.87055 0.96794 1.22205 0.95276 0.96730 0.93525 1.21581 1.01043 0.92382 1.02362 1.22306 0.80785 1.00425 0.96520 1.21683 0.95929 0.94463 1.02802 1.22046 0.93532 0.99059 0.91951 0.90690 0.91036 0.94863 0.93480 0.89476 0.90739 0.92727 0.86572 0.92250 0.87172 0.95030 0.93036 0.92949 0.93889 0.94416 0.91088 0.91666 0.91758 0.90422 0.93097 0.92747 0.90081 0.93207 0.89884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.59 127.69 1.22 1.56 16 2 N -0.56 -9.82 4.91 -922.57 -4.53 -14.35 16 3 C 0.06 0.98 5.46 86.33 0.47 1.45 16 4 C -0.09 -1.88 4.68 30.65 0.14 -1.74 16 5 C -0.09 -1.99 1.92 -11.46 -0.02 -2.02 16 6 C 0.54 15.51 7.27 87.66 0.64 16.14 16 7 O -0.58 -21.20 16.24 -3.02 -0.05 -21.25 16 8 N -0.61 -17.58 3.30 -808.35 -2.67 -20.25 16 9 C 0.11 2.97 4.72 86.52 0.41 3.38 16 10 C -0.10 -2.73 3.73 -9.38 -0.03 -2.76 16 11 H 0.12 2.61 7.90 -2.39 -0.02 2.59 16 12 C 0.11 4.05 4.05 86.50 0.35 4.40 16 13 N -0.62 -28.02 3.21 -695.12 -2.23 -30.25 16 14 C -0.23 -12.78 10.67 84.03 0.90 -11.88 16 15 H 0.06 3.41 8.06 -2.91 -0.02 3.39 16 16 C -0.04 -2.20 5.45 84.86 0.46 -1.74 16 17 N -0.96 -59.85 13.97 21.65 0.30 -59.55 16 18 Si 0.95 44.66 24.36 68.60 1.67 46.33 16 19 H -0.26 -11.09 6.36 99.48 0.63 -10.45 16 20 H -0.31 -15.26 7.11 99.48 0.71 -14.56 16 21 H -0.27 -11.97 6.49 99.48 0.65 -11.32 16 22 C 0.14 5.08 6.18 86.47 0.53 5.61 16 23 C -0.08 -2.14 1.08 -50.76 -0.05 -2.19 16 24 C -0.12 -2.52 8.60 71.98 0.62 -1.91 16 25 C 0.12 3.81 6.13 86.53 0.53 4.34 16 26 C -0.11 -2.31 5.11 30.65 0.16 -2.15 16 27 C 0.06 1.05 5.46 86.33 0.47 1.52 16 28 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.07 0.87 8.09 -2.38 -0.02 0.85 16 30 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.09 1.22 8.12 -2.39 -0.02 1.20 16 33 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.05 1.40 8.04 -2.39 -0.02 1.38 16 35 H 0.12 1.91 7.95 -2.39 -0.02 1.89 16 36 H 0.06 1.91 7.44 -2.39 -0.02 1.90 16 37 H 0.11 2.10 6.52 -2.39 -0.02 2.09 16 38 H 0.03 1.19 6.16 -2.39 -0.01 1.18 16 39 H 0.05 2.08 5.22 -2.39 -0.01 2.07 16 40 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 41 H 0.04 1.63 7.59 -2.38 -0.02 1.61 16 42 H 0.04 1.32 7.88 -2.39 -0.02 1.30 16 43 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 44 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 46 H 0.08 2.39 7.66 -2.39 -0.02 2.37 16 47 H 0.05 1.86 7.53 -2.39 -0.02 1.84 16 48 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 49 H 0.08 1.67 5.43 -2.39 -0.01 1.66 16 50 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 51 H 0.08 1.35 8.08 -2.39 -0.02 1.34 16 Total: -1.00 -70.96 375.34 0.04 -70.93 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.75 Total: 16.37 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: 6.79 Total: 12.02 kcal Atomic # 7 Polarization: -115.26 SS G_CDS: -9.13 Total: -124.39 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.05 Total: -21.25 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.67 Total: 46.33 kcal Total: -70.96 0.04 -70.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091974900.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.295 kcal (2) G-P(sol) polarization free energy of solvation -70.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds