Wall clock time and date at job start Fri Apr 10 2020 18:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.91515 * 2 1 4 4 C 1.55119 * 111.16193 * 236.06802 * 2 1 3 5 5 N 1.47422 * 104.94265 * 205.13118 * 4 2 1 6 6 C 1.36937 * 125.65049 * 204.04127 * 5 4 2 7 7 H 1.08001 * 119.99937 * 179.97438 * 6 5 4 8 8 C 1.38813 * 119.99827 * 359.95760 * 6 5 4 9 9 N 1.31616 * 120.00295 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99948 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46881 * 90.00066 * 10 8 6 12 12 H 1.48500 * 109.47082 * 210.00144 * 10 8 6 13 13 H 1.48503 * 109.46951 * 330.00061 * 10 8 6 14 14 C 1.47023 * 108.70261 * 24.00510 * 5 4 2 15 15 C 1.54323 * 107.27187 * 358.93945 * 14 5 4 16 16 H 1.09007 * 110.71538 * 96.34795 * 15 14 5 17 17 C 1.52997 * 110.72135 * 219.44216 * 15 14 5 18 18 N 1.46505 * 109.47212 * 291.15752 * 17 15 14 19 19 C 1.34771 * 119.99622 * 179.97438 * 18 17 15 20 20 O 1.21280 * 120.00597 * 0.02562 * 19 18 17 21 21 C 1.50701 * 119.99622 * 179.97438 * 19 18 17 22 22 C 1.54134 * 110.74861 * 327.46073 * 21 19 18 23 23 C 1.57070 * 102.00768 * 97.57635 * 22 21 19 24 24 C 1.54837 * 101.72718 * 36.31204 * 23 22 21 25 25 N 1.47854 * 110.77463 * 87.12919 * 21 19 18 26 26 C 1.47954 * 108.37421 * 120.33123 * 25 21 19 27 27 C 1.54841 * 105.06766 * 337.18307 * 26 25 21 28 28 C 1.54134 * 110.74700 * 206.01591 * 21 19 18 29 29 H 1.08997 * 109.47131 * 296.09872 * 1 2 3 30 30 H 1.08996 * 109.47180 * 56.10403 * 1 2 3 31 31 H 1.09002 * 109.46991 * 176.10320 * 1 2 3 32 32 H 1.08998 * 110.41489 * 86.20495 * 4 2 1 33 33 H 1.09005 * 110.30617 * 323.99939 * 4 2 1 34 34 H 0.96998 * 120.00509 * 179.97438 * 9 8 6 35 35 H 1.08995 * 109.88173 * 239.52037 * 14 5 4 36 36 H 1.09005 * 109.88046 * 118.35999 * 14 5 4 37 37 H 1.09002 * 109.47153 * 171.15744 * 17 15 14 38 38 H 1.09001 * 109.46832 * 51.15935 * 17 15 14 39 39 H 0.96996 * 119.99606 * 0.02562 * 18 17 15 40 40 H 1.08995 * 110.73385 * 215.76742 * 22 21 19 41 41 H 1.09002 * 110.72798 * 339.07083 * 22 21 19 42 42 H 1.09001 * 111.10419 * 278.12879 * 23 22 21 43 43 H 1.08998 * 110.80758 * 154.36151 * 23 22 21 44 44 H 1.09000 * 110.32446 * 204.26457 * 24 23 22 45 45 H 1.09002 * 110.41003 * 82.10076 * 24 23 22 46 46 H 1.09000 * 110.32350 * 218.28574 * 26 25 21 47 47 H 1.09003 * 110.41218 * 96.12352 * 26 25 21 48 48 H 1.09001 * 110.98829 * 278.58569 * 27 26 25 49 49 H 1.08995 * 111.02505 * 154.77517 * 27 26 25 50 50 H 1.08999 * 110.73031 * 20.92197 * 28 21 19 51 51 H 1.09002 * 110.73193 * 144.03779 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0900 -0.8075 -1.2002 5 7 3.4298 -1.2474 -0.7704 6 6 4.4679 -1.5729 -1.6021 7 1 5.4149 -1.8848 -1.1870 8 6 4.3029 -1.5021 -2.9785 9 7 3.1489 -1.1217 -3.4844 10 14 5.7188 -1.9467 -4.1130 11 1 5.6624 -3.3963 -4.4304 12 1 5.6128 -1.1606 -5.3684 13 1 7.0068 -1.6366 -3.4421 14 6 3.4671 -1.2780 0.6990 15 6 2.0861 -0.8078 1.2023 16 1 1.4451 -1.6614 1.4230 17 6 2.2349 0.0877 2.4339 18 7 2.7029 -0.7142 3.5671 19 6 2.9072 -0.1324 4.7655 20 8 2.7032 1.0548 4.9059 21 6 3.3880 -0.9574 5.9314 22 6 2.8386 -2.3950 5.8465 23 6 4.0427 -3.1673 5.1979 24 6 5.2571 -2.4587 5.8466 25 7 4.8644 -1.0356 5.9451 26 6 5.3499 -0.4637 7.2203 27 6 4.2121 0.4696 7.7019 28 6 2.9512 -0.3228 7.2664 29 1 -0.3633 0.4521 0.9229 30 1 -0.3633 0.5731 -0.8530 31 1 -0.3633 -1.0253 -0.0698 32 1 2.1642 -0.1733 -2.0836 33 1 1.4553 -1.6697 -1.4052 34 1 3.0337 -1.0719 -4.4462 35 1 4.2434 -0.6057 1.0642 36 1 3.6613 -2.2937 1.0438 37 1 1.2705 0.5333 2.6777 38 1 2.9571 0.8767 2.2242 39 1 2.8663 -1.6637 3.4547 40 1 2.6160 -2.7823 6.8407 41 1 1.9549 -2.4333 5.2095 42 1 4.0510 -3.0432 4.1150 43 1 4.0164 -4.2228 5.4683 44 1 6.1392 -2.5652 5.2153 45 1 5.4505 -2.8675 6.8384 46 1 6.2637 0.1073 7.0556 47 1 5.5248 -1.2547 7.9495 48 1 4.2597 1.4352 7.1983 49 1 4.2403 0.5942 8.7844 50 1 2.1062 0.3491 7.1159 51 1 2.7045 -1.0929 7.9973 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092774012.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:53 Heat of formation + Delta-G solvation = -9.108915 kcal Electronic energy + Delta-G solvation = -28735.398638 eV Core-core repulsion = 25055.753719 eV Total energy + Delta-G solvation = -3679.644918 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.08288 -38.68509 -37.69814 -34.97412 -33.84332 -32.83607 -31.70067 -30.72669 -29.33002 -28.29720 -26.01419 -25.70262 -25.06530 -23.16642 -22.12274 -21.69072 -20.99897 -19.82028 -19.78626 -18.84659 -17.53133 -16.76344 -16.40744 -15.62752 -15.52741 -14.97043 -14.76987 -14.56166 -14.20600 -13.93447 -13.67124 -13.63203 -13.35521 -13.00181 -12.75747 -12.62721 -12.55549 -12.33602 -11.87876 -11.85682 -11.68210 -11.52870 -11.41463 -11.34917 -11.21099 -11.14170 -11.06828 -10.85373 -10.78149 -10.65207 -10.19660 -10.01229 -9.91128 -9.84466 -9.69761 -9.36129 -8.82819 -8.65498 -8.62808 -6.80825 -5.63287 -3.04805 2.61287 3.28893 3.41135 3.46221 3.48307 3.91218 4.07918 4.21529 4.46952 4.50382 4.68003 4.75659 4.81631 4.89578 5.05976 5.15747 5.20842 5.28537 5.29141 5.34521 5.41105 5.47709 5.52335 5.57964 5.60184 5.61459 5.68306 5.71940 5.80972 5.84961 5.86771 5.91109 6.05207 6.10774 6.18189 6.23635 6.30666 6.53084 6.56107 6.57605 6.63602 6.65999 6.69794 6.83669 6.99079 7.55606 7.65360 7.67204 7.88669 8.37491 8.38709 9.24428 9.85276 10.50430 11.40467 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.016517 B = 0.003236 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.852276 B = 8651.425863 C = 9623.191119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.111 4.111 3 H 0.071 0.929 4 C 0.160 3.840 5 N -0.605 5.605 6 C -0.222 4.222 7 H 0.077 0.923 8 C -0.011 4.011 9 N -0.922 5.922 10 Si 0.914 3.086 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.281 1.281 14 C 0.143 3.857 15 C -0.109 4.109 16 H 0.074 0.926 17 C 0.132 3.868 18 N -0.719 5.719 19 C 0.542 3.458 20 O -0.542 6.542 21 C 0.071 3.929 22 C -0.140 4.140 23 C -0.136 4.136 24 C 0.035 3.965 25 N -0.498 5.498 26 C 0.037 3.963 27 C -0.129 4.129 28 C -0.121 4.121 29 H 0.044 0.956 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.106 0.894 33 H 0.012 0.988 34 H 0.252 0.748 35 H 0.025 0.975 36 H 0.016 0.984 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.399 0.601 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.053 0.947 46 H 0.083 0.917 47 H 0.051 0.949 48 H 0.083 0.917 49 H 0.074 0.926 50 H 0.085 0.915 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.036 -2.510 22.296 22.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.132 4.132 3 H 0.090 0.910 4 C 0.035 3.965 5 N -0.330 5.330 6 C -0.350 4.350 7 H 0.094 0.906 8 C -0.207 4.207 9 N -0.571 5.571 10 Si 0.744 3.256 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.016 3.984 15 C -0.129 4.129 16 H 0.093 0.907 17 C 0.009 3.991 18 N -0.371 5.371 19 C 0.327 3.673 20 O -0.418 6.418 21 C -0.022 4.022 22 C -0.179 4.179 23 C -0.174 4.174 24 C -0.092 4.092 25 N -0.223 5.223 26 C -0.091 4.091 27 C -0.167 4.167 28 C -0.160 4.160 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.124 0.876 33 H 0.030 0.970 34 H 0.062 0.938 35 H 0.043 0.957 36 H 0.034 0.966 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.234 0.766 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.105 0.895 45 H 0.071 0.929 46 H 0.101 0.899 47 H 0.070 0.930 48 H 0.101 0.899 49 H 0.092 0.908 50 H 0.103 0.897 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.879 -1.357 21.693 21.817 hybrid contribution 0.541 -1.285 -0.022 1.394 sum -1.339 -2.642 21.671 21.872 Atomic orbital electron populations 1.21643 0.95517 1.01354 1.00639 1.22634 0.94547 0.99550 0.96434 0.91041 1.22006 0.84061 0.95809 0.94620 1.44479 1.10652 1.78842 0.99035 1.19080 0.91115 1.37550 0.87248 0.90553 1.24779 0.97284 1.02024 0.96597 1.69793 1.22533 1.53825 1.10934 0.86083 0.81311 0.77784 0.80400 1.21683 1.21657 1.20698 1.21320 0.93506 0.96992 0.86542 1.22487 0.98559 0.98071 0.93751 0.90719 1.21449 0.99425 0.93975 0.84297 1.46143 1.67837 1.13129 1.09984 1.19955 0.76477 0.87565 0.83335 1.90656 1.51730 1.15485 1.83893 1.22378 0.89766 0.95372 0.94708 1.23391 0.98883 0.93255 1.02354 1.23188 0.93509 0.99659 1.01047 1.23299 0.98872 0.86813 1.00237 1.65032 1.06645 1.16405 1.34217 1.23275 0.98952 0.97637 0.89213 1.22747 0.93455 0.99707 1.00762 1.22742 0.99569 0.99659 0.93989 0.93675 0.92673 0.93000 0.87648 0.96986 0.93763 0.95688 0.96590 0.91755 0.91328 0.76558 0.90056 0.89903 0.90125 0.90044 0.89491 0.92879 0.89861 0.93040 0.89874 0.90772 0.89682 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 9.32 37.16 0.35 -1.73 16 2 C -0.11 -2.08 3.10 -88.36 -0.27 -2.36 16 3 H 0.07 1.37 8.05 -51.93 -0.42 0.96 16 4 C 0.16 3.85 5.37 -2.42 -0.01 3.84 16 5 N -0.60 -15.52 3.40 -169.94 -0.58 -16.09 16 6 C -0.22 -6.22 10.27 -15.06 -0.15 -6.37 16 7 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 8 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 9 N -0.92 -26.92 10.09 55.49 0.56 -26.36 16 10 Si 0.91 22.19 29.55 -169.99 -5.02 17.16 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 C 0.14 2.95 6.64 -3.06 -0.02 2.93 16 15 C -0.11 -1.86 2.45 -88.79 -0.22 -2.08 16 16 H 0.07 1.19 8.04 -51.92 -0.42 0.77 16 17 C 0.13 2.06 5.00 -4.04 -0.02 2.04 16 18 N -0.72 -10.01 5.06 -60.29 -0.31 -10.32 16 19 C 0.54 7.93 6.89 -10.99 -0.08 7.85 16 20 O -0.54 -9.73 15.98 5.56 0.09 -9.65 16 21 C 0.07 0.79 0.93 -131.04 -0.12 0.66 16 22 C -0.14 -1.20 5.61 -23.93 -0.13 -1.34 16 23 C -0.14 -1.13 6.86 -23.56 -0.16 -1.29 16 24 C 0.04 0.32 6.75 -2.27 -0.02 0.30 16 25 N -0.50 -5.58 5.37 -214.07 -1.15 -6.73 16 26 C 0.04 0.35 6.74 -2.27 -0.02 0.33 16 27 C -0.13 -1.22 7.07 -24.62 -0.17 -1.40 16 28 C -0.12 -1.20 5.72 -24.99 -0.14 -1.34 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.79 8.08 -51.93 -0.42 0.37 16 32 H 0.11 2.89 5.87 -51.93 -0.30 2.58 16 33 H 0.01 0.31 7.99 -51.93 -0.41 -0.10 16 34 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.03 0.54 7.73 -51.93 -0.40 0.14 16 36 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.07 1.21 8.00 -51.93 -0.42 0.79 16 39 H 0.40 4.93 5.50 -40.82 -0.22 4.71 16 40 H 0.08 0.57 7.32 -51.93 -0.38 0.19 16 41 H 0.08 0.71 7.20 -51.93 -0.37 0.33 16 42 H 0.08 0.76 6.73 -51.93 -0.35 0.41 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.05 0.40 7.13 -51.93 -0.37 0.03 16 46 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.05 0.40 7.14 -51.93 -0.37 0.02 16 48 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 49 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.08 0.96 7.36 -51.93 -0.38 0.57 16 51 H 0.07 0.57 7.32 -51.93 -0.38 0.19 16 LS Contribution 383.84 15.07 5.78 5.78 Total: -1.00 -32.24 383.84 -10.89 -43.13 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -8.97 Total: 3.43 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -1.29 Total: -0.37 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: -1.47 Total: -59.49 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.09 Total: -9.65 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.24 -10.89 -43.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092774012.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.022 kcal (2) G-P(sol) polarization free energy of solvation -32.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds