Wall clock time and date at job start Fri Apr 10 2020 18:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.91515 * 2 1 4 4 C 1.55119 * 111.16193 * 236.06802 * 2 1 3 5 5 N 1.47422 * 104.94265 * 205.13118 * 4 2 1 6 6 C 1.36937 * 125.65049 * 204.04127 * 5 4 2 7 7 H 1.08001 * 119.99937 * 179.97438 * 6 5 4 8 8 C 1.38813 * 119.99827 * 359.95760 * 6 5 4 9 9 N 1.31616 * 120.00295 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99948 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46881 * 90.00066 * 10 8 6 12 12 H 1.48500 * 109.47082 * 210.00144 * 10 8 6 13 13 H 1.48503 * 109.46951 * 330.00061 * 10 8 6 14 14 C 1.47023 * 108.70261 * 24.00510 * 5 4 2 15 15 C 1.54323 * 107.27187 * 358.93945 * 14 5 4 16 16 H 1.09007 * 110.71538 * 96.34795 * 15 14 5 17 17 C 1.52997 * 110.72135 * 219.44216 * 15 14 5 18 18 N 1.46505 * 109.47212 * 291.15752 * 17 15 14 19 19 C 1.34771 * 119.99622 * 179.97438 * 18 17 15 20 20 O 1.21280 * 120.00597 * 0.02562 * 19 18 17 21 21 C 1.50701 * 119.99622 * 179.97438 * 19 18 17 22 22 C 1.54134 * 110.74861 * 327.46073 * 21 19 18 23 23 C 1.57070 * 102.00768 * 97.57635 * 22 21 19 24 24 C 1.54837 * 101.72718 * 36.31204 * 23 22 21 25 25 N 1.47854 * 110.77463 * 87.12919 * 21 19 18 26 26 C 1.47954 * 108.37421 * 120.33123 * 25 21 19 27 27 C 1.54841 * 105.06766 * 337.18307 * 26 25 21 28 28 C 1.54134 * 110.74700 * 206.01591 * 21 19 18 29 29 H 1.08997 * 109.47131 * 296.09872 * 1 2 3 30 30 H 1.08996 * 109.47180 * 56.10403 * 1 2 3 31 31 H 1.09002 * 109.46991 * 176.10320 * 1 2 3 32 32 H 1.08998 * 110.41489 * 86.20495 * 4 2 1 33 33 H 1.09005 * 110.30617 * 323.99939 * 4 2 1 34 34 H 0.96998 * 120.00509 * 179.97438 * 9 8 6 35 35 H 1.08995 * 109.88173 * 239.52037 * 14 5 4 36 36 H 1.09005 * 109.88046 * 118.35999 * 14 5 4 37 37 H 1.09002 * 109.47153 * 171.15744 * 17 15 14 38 38 H 1.09001 * 109.46832 * 51.15935 * 17 15 14 39 39 H 0.96996 * 119.99606 * 0.02562 * 18 17 15 40 40 H 1.08995 * 110.73385 * 215.76742 * 22 21 19 41 41 H 1.09002 * 110.72798 * 339.07083 * 22 21 19 42 42 H 1.09001 * 111.10419 * 278.12879 * 23 22 21 43 43 H 1.08998 * 110.80758 * 154.36151 * 23 22 21 44 44 H 1.09000 * 110.32446 * 204.26457 * 24 23 22 45 45 H 1.09002 * 110.41003 * 82.10076 * 24 23 22 46 46 H 1.09000 * 110.32350 * 218.28574 * 26 25 21 47 47 H 1.09003 * 110.41218 * 96.12352 * 26 25 21 48 48 H 1.09001 * 110.98829 * 278.58569 * 27 26 25 49 49 H 1.08995 * 111.02505 * 154.77517 * 27 26 25 50 50 H 1.08999 * 110.73031 * 20.92197 * 28 21 19 51 51 H 1.09002 * 110.73193 * 144.03779 * 28 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0900 -0.8075 -1.2002 5 7 3.4298 -1.2474 -0.7704 6 6 4.4679 -1.5729 -1.6021 7 1 5.4149 -1.8848 -1.1870 8 6 4.3029 -1.5021 -2.9785 9 7 3.1489 -1.1217 -3.4844 10 14 5.7188 -1.9467 -4.1130 11 1 5.6624 -3.3963 -4.4304 12 1 5.6128 -1.1606 -5.3684 13 1 7.0068 -1.6366 -3.4421 14 6 3.4671 -1.2780 0.6990 15 6 2.0861 -0.8078 1.2023 16 1 1.4451 -1.6614 1.4230 17 6 2.2349 0.0877 2.4339 18 7 2.7029 -0.7142 3.5671 19 6 2.9072 -0.1324 4.7655 20 8 2.7032 1.0548 4.9059 21 6 3.3880 -0.9574 5.9314 22 6 2.8386 -2.3950 5.8465 23 6 4.0427 -3.1673 5.1979 24 6 5.2571 -2.4587 5.8466 25 7 4.8644 -1.0356 5.9451 26 6 5.3499 -0.4637 7.2203 27 6 4.2121 0.4696 7.7019 28 6 2.9512 -0.3228 7.2664 29 1 -0.3633 0.4521 0.9229 30 1 -0.3633 0.5731 -0.8530 31 1 -0.3633 -1.0253 -0.0698 32 1 2.1642 -0.1733 -2.0836 33 1 1.4553 -1.6697 -1.4052 34 1 3.0337 -1.0719 -4.4462 35 1 4.2434 -0.6057 1.0642 36 1 3.6613 -2.2937 1.0438 37 1 1.2705 0.5333 2.6777 38 1 2.9571 0.8767 2.2242 39 1 2.8663 -1.6637 3.4547 40 1 2.6160 -2.7823 6.8407 41 1 1.9549 -2.4333 5.2095 42 1 4.0510 -3.0432 4.1150 43 1 4.0164 -4.2228 5.4683 44 1 6.1392 -2.5652 5.2153 45 1 5.4505 -2.8675 6.8384 46 1 6.2637 0.1073 7.0556 47 1 5.5248 -1.2547 7.9495 48 1 4.2597 1.4352 7.1983 49 1 4.2403 0.5942 8.7844 50 1 2.1062 0.3491 7.1159 51 1 2.7045 -1.0929 7.9973 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092774012.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:52 Heat of formation + Delta-G solvation = -30.694374 kcal Electronic energy + Delta-G solvation = -28736.334653 eV Core-core repulsion = 25055.753719 eV Total energy + Delta-G solvation = -3680.580934 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.97906 -40.01701 -39.07546 -36.24025 -35.03380 -34.29838 -32.57936 -32.51267 -30.71462 -29.18913 -27.84275 -26.71079 -26.33025 -24.70623 -23.17367 -22.60542 -21.70458 -21.50141 -21.16575 -20.05925 -18.85880 -18.38364 -17.37289 -17.08818 -16.52611 -16.44756 -15.96843 -15.70835 -15.54743 -15.30453 -14.77627 -14.76002 -14.52059 -14.25926 -14.05389 -13.87712 -13.52318 -13.43441 -13.35346 -13.17850 -12.99855 -12.75811 -12.68765 -12.53540 -12.47649 -12.39045 -12.09766 -11.97613 -11.94108 -11.85574 -11.76972 -11.60872 -11.42414 -11.36300 -11.23454 -10.82058 -10.73403 -10.06049 -9.43577 -8.88208 -7.77203 -5.21701 1.45837 1.47765 1.53814 1.56535 2.19533 2.49153 3.10848 3.31667 3.35567 3.47313 3.62023 3.74897 3.77712 3.87619 3.93893 3.99199 4.00248 4.09930 4.22113 4.37121 4.41127 4.48319 4.54456 4.60874 4.61552 4.70300 4.74096 4.78725 4.84041 4.85218 4.86756 4.96895 4.97718 5.02919 5.05572 5.09355 5.12664 5.16051 5.21150 5.29994 5.36015 5.38483 5.45287 5.50437 5.71838 5.81424 5.84261 6.00849 6.31753 6.56010 7.11376 7.25040 7.78722 8.42605 9.24271 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.016517 B = 0.003236 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.852276 B = 8651.425863 C = 9623.191119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.102 4.102 3 H 0.063 0.937 4 C 0.164 3.836 5 N -0.628 5.628 6 C -0.241 4.241 7 H 0.078 0.922 8 C -0.066 4.066 9 N -0.947 5.947 10 Si 0.979 3.021 11 H -0.284 1.284 12 H -0.293 1.293 13 H -0.272 1.272 14 C 0.141 3.859 15 C -0.088 4.088 16 H 0.096 0.904 17 C 0.144 3.856 18 N -0.713 5.713 19 C 0.535 3.465 20 O -0.582 6.582 21 C 0.071 3.929 22 C -0.134 4.134 23 C -0.134 4.134 24 C 0.035 3.965 25 N -0.527 5.527 26 C 0.038 3.962 27 C -0.128 4.128 28 C -0.119 4.119 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.068 0.932 33 H -0.008 1.008 34 H 0.247 0.753 35 H 0.014 0.986 36 H 0.027 0.973 37 H 0.076 0.924 38 H 0.044 0.956 39 H 0.408 0.592 40 H 0.106 0.894 41 H 0.083 0.917 42 H 0.064 0.936 43 H 0.104 0.896 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.051 0.949 49 H 0.099 0.901 50 H 0.066 0.934 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.229 -4.169 24.715 25.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.122 4.122 3 H 0.081 0.919 4 C 0.039 3.961 5 N -0.354 5.354 6 C -0.370 4.370 7 H 0.096 0.904 8 C -0.258 4.258 9 N -0.597 5.597 10 Si 0.807 3.193 11 H -0.211 1.211 12 H -0.219 1.219 13 H -0.197 1.197 14 C 0.016 3.984 15 C -0.107 4.107 16 H 0.114 0.886 17 C 0.020 3.980 18 N -0.365 5.365 19 C 0.321 3.679 20 O -0.461 6.461 21 C -0.022 4.022 22 C -0.172 4.172 23 C -0.172 4.172 24 C -0.092 4.092 25 N -0.253 5.253 26 C -0.089 4.089 27 C -0.166 4.166 28 C -0.157 4.157 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.010 0.990 34 H 0.057 0.943 35 H 0.032 0.968 36 H 0.045 0.955 37 H 0.094 0.906 38 H 0.062 0.938 39 H 0.245 0.755 40 H 0.124 0.876 41 H 0.101 0.899 42 H 0.083 0.917 43 H 0.122 0.878 44 H 0.096 0.904 45 H 0.093 0.907 46 H 0.094 0.906 47 H 0.095 0.905 48 H 0.070 0.930 49 H 0.117 0.883 50 H 0.085 0.915 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.063 -3.043 24.143 24.421 hybrid contribution 0.654 -0.735 -0.777 1.254 sum -1.409 -3.777 23.366 23.711 Atomic orbital electron populations 1.21593 0.92546 1.02059 1.02183 1.22481 0.96885 0.98244 0.94567 0.91891 1.21784 0.83695 0.94917 0.95740 1.44797 1.10673 1.78888 1.00997 1.19438 0.91993 1.37417 0.88126 0.90434 1.25619 0.99781 1.02414 0.98028 1.70053 1.24224 1.54693 1.10715 0.85066 0.78718 0.77399 0.78073 1.21118 1.21930 1.19667 1.21446 0.95503 0.97340 0.84116 1.22323 0.96402 0.98543 0.93474 0.88579 1.21181 0.99387 0.93173 0.84296 1.46086 1.67514 1.13425 1.09499 1.20755 0.75498 0.87475 0.84146 1.90633 1.53371 1.17430 1.84622 1.22340 0.90059 0.96429 0.93381 1.23409 0.98683 0.91274 1.03829 1.23191 0.93074 1.00920 0.99997 1.23338 0.98758 0.85777 1.01343 1.64902 1.06700 1.18070 1.35637 1.23301 0.98376 0.98148 0.89100 1.22725 0.93650 0.98234 1.01973 1.22778 0.98831 1.00087 0.94034 0.90840 0.92642 0.92505 0.91387 0.98969 0.94323 0.96822 0.95527 0.90553 0.93751 0.75477 0.87579 0.89879 0.91749 0.87752 0.90422 0.90695 0.90607 0.90511 0.93021 0.88265 0.91547 0.87769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.71 9.32 71.98 0.67 -3.04 16 2 C -0.10 -3.78 3.10 -9.33 -0.03 -3.80 16 3 H 0.06 2.45 8.05 -2.39 -0.02 2.43 16 4 C 0.16 8.11 5.37 86.93 0.47 8.57 16 5 N -0.63 -32.94 3.40 -691.57 -2.35 -35.28 16 6 C -0.24 -13.79 10.27 84.03 0.86 -12.92 16 7 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 8 C -0.07 -3.79 5.49 84.86 0.47 -3.32 16 9 N -0.95 -57.00 10.09 21.65 0.22 -56.78 16 10 Si 0.98 46.26 29.55 68.60 2.03 48.29 16 11 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 12 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 13 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 14 C 0.14 5.86 6.64 86.73 0.58 6.44 16 15 C -0.09 -2.92 2.45 -9.61 -0.02 -2.94 16 16 H 0.10 2.82 8.04 -2.38 -0.02 2.81 16 17 C 0.14 4.37 5.00 86.38 0.43 4.80 16 18 N -0.71 -19.16 5.06 -463.06 -2.35 -21.50 16 19 C 0.54 15.33 6.89 87.66 0.60 15.94 16 20 O -0.58 -21.17 15.98 -3.03 -0.05 -21.22 16 21 C 0.07 1.45 0.93 3.37 0.00 1.45 16 22 C -0.13 -1.86 5.61 32.41 0.18 -1.68 16 23 C -0.13 -1.84 6.86 32.65 0.22 -1.62 16 24 C 0.03 0.54 6.75 86.73 0.59 1.13 16 25 N -0.53 -10.99 5.37 -831.18 -4.46 -15.46 16 26 C 0.04 0.64 6.74 86.73 0.58 1.22 16 27 C -0.13 -2.25 7.07 31.97 0.23 -2.03 16 28 C -0.12 -2.11 5.72 31.72 0.18 -1.93 16 29 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.06 1.62 8.08 -2.39 -0.02 1.60 16 32 H 0.07 3.90 5.87 -2.39 -0.01 3.88 16 33 H -0.01 -0.40 7.99 -2.38 -0.02 -0.42 16 34 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 35 H 0.01 0.60 7.73 -2.39 -0.02 0.58 16 36 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.04 1.58 8.00 -2.39 -0.02 1.56 16 39 H 0.41 9.48 5.50 -92.71 -0.51 8.97 16 40 H 0.11 1.00 7.32 -2.39 -0.02 0.98 16 41 H 0.08 1.17 7.20 -2.39 -0.02 1.15 16 42 H 0.06 1.09 6.73 -2.39 -0.02 1.08 16 43 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.07 0.84 7.13 -2.39 -0.02 0.82 16 46 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.08 0.91 7.14 -2.39 -0.02 0.89 16 48 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 49 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 50 H 0.07 1.44 7.36 -2.39 -0.02 1.42 16 51 H 0.10 1.21 7.32 -2.39 -0.02 1.19 16 Total: -1.00 -72.86 383.84 -0.55 -73.41 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: 0.39 Total: 22.27 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: 6.01 Total: 6.27 kcal Atomic # 7 Polarization: -120.08 SS G_CDS: -8.94 Total: -129.02 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.05 Total: -21.22 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -72.86 -0.55 -73.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092774012.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.719 kcal (2) G-P(sol) polarization free energy of solvation -72.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds