Wall clock time and date at job start Fri Apr 10 2020 18:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47443 * 110.99893 * 2 1 4 4 C 1.54314 * 107.23178 * 123.25864 * 3 2 1 5 5 C 1.55142 * 103.02375 * 22.28388 * 4 3 2 6 6 C 1.47846 * 110.99863 * 120.84422 * 2 1 3 7 7 H 1.09000 * 110.37732 * 332.57440 * 6 2 1 8 8 C 1.50703 * 110.37598 * 94.80741 * 6 2 1 9 9 O 1.21277 * 119.99671 * 18.54856 * 8 6 2 10 10 N 1.34770 * 119.99949 * 198.54565 * 8 6 2 11 11 C 1.46499 * 120.00166 * 180.02562 * 10 8 6 12 12 C 1.52998 * 109.47346 * 179.97438 * 11 10 8 13 13 C 1.53355 * 111.22722 * 299.52274 * 12 11 10 14 14 C 1.54267 * 106.46683 * 242.71963 * 13 12 11 15 15 C 1.54679 * 104.11603 * 333.97071 * 14 13 12 16 16 C 1.54575 * 111.31841 * 179.97438 * 12 11 10 17 17 H 1.09001 * 112.69025 * 18.64251 * 16 12 11 18 18 N 1.46891 * 107.36959 * 255.04951 * 16 12 11 19 19 C 1.36940 * 125.24984 * 181.65312 * 18 16 12 20 20 H 1.07997 * 119.99785 * 15.49792 * 19 18 16 21 21 C 1.38810 * 120.00116 * 195.49435 * 19 18 16 22 22 N 1.31623 * 119.99641 * 31.21254 * 21 19 18 23 23 Si 1.86800 * 120.00239 * 210.93380 * 21 19 18 24 24 H 1.48502 * 109.46930 * 180.27489 * 23 21 19 25 25 H 1.48497 * 109.47035 * 300.27587 * 23 21 19 26 26 H 1.48495 * 109.46831 * 60.27572 * 23 21 19 27 27 C 1.46732 * 109.49682 * 1.91884 * 18 16 12 28 28 C 1.53868 * 111.73436 * 63.25476 * 12 11 10 29 29 H 1.08990 * 109.47328 * 299.15623 * 1 2 3 30 30 H 1.09000 * 109.46786 * 59.16152 * 1 2 3 31 31 H 1.09004 * 109.47184 * 179.15603 * 1 2 3 32 32 H 1.09005 * 109.88659 * 242.66284 * 3 2 1 33 33 H 1.08995 * 109.88563 * 3.68495 * 3 2 1 34 34 H 1.08998 * 110.70496 * 140.66666 * 4 3 2 35 35 H 1.08999 * 110.70276 * 263.72575 * 4 3 2 36 36 H 1.09003 * 110.99279 * 206.25723 * 5 4 3 37 37 H 1.08995 * 110.99373 * 82.43579 * 5 4 3 38 38 H 0.97005 * 120.00019 * 359.97438 * 10 8 6 39 39 H 1.09000 * 109.47275 * 59.99760 * 11 10 8 40 40 H 1.09003 * 109.46876 * 299.99601 * 11 10 8 41 41 H 1.09004 * 110.05431 * 123.47735 * 13 12 11 42 42 H 1.08998 * 110.05882 * 1.97585 * 13 12 11 43 43 H 1.08991 * 110.50532 * 215.30180 * 14 13 12 44 44 H 1.09006 * 110.61331 * 92.68009 * 14 13 12 45 45 H 1.09004 * 110.61097 * 278.82220 * 15 14 13 46 46 H 1.09005 * 110.61447 * 155.84412 * 15 14 13 47 47 H 0.97002 * 120.00276 * 5.26673 * 22 21 19 48 48 H 1.09012 * 110.04343 * 100.24767 * 27 18 16 49 49 H 1.09004 * 110.04151 * 221.70045 * 27 18 16 50 50 H 1.09000 * 110.57169 * 212.77009 * 28 12 11 51 51 H 1.09000 * 110.57477 * 335.49523 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9158 1.5136 1.2325 5 6 3.3048 0.0444 1.5438 6 6 1.9988 -0.7077 1.1851 7 1 1.2881 -0.6519 2.0096 8 6 2.2974 -2.1457 0.8474 9 8 2.4209 -2.4836 -0.3107 10 7 2.4271 -3.0562 1.8326 11 6 2.7179 -4.4541 1.5044 12 6 2.8147 -5.2712 2.7943 13 6 3.9365 -4.7484 3.6999 14 6 4.9600 -5.8948 3.8343 15 6 4.1249 -7.1755 3.6003 16 6 3.1206 -6.7569 2.4967 17 1 3.5277 -6.9104 1.4973 18 7 1.8764 -7.5104 2.7016 19 6 1.7428 -8.8667 2.5685 20 1 2.6203 -9.4957 2.5416 21 6 0.4795 -9.4332 2.4682 22 7 -0.5001 -8.7609 1.9017 23 14 0.1716 -11.1526 3.1302 24 1 -1.2465 -11.5264 2.8963 25 1 1.0593 -12.1176 2.4333 26 1 0.4571 -11.1804 4.5872 27 6 0.7974 -6.5846 3.0646 28 6 1.4788 -5.2918 3.5575 29 1 -0.3633 0.5006 0.8974 30 1 -0.3633 0.5268 -0.8824 31 1 -0.3634 -1.0276 -0.0151 32 1 2.5697 1.5540 -0.9106 33 1 1.1753 2.0892 0.0659 34 1 3.8000 2.1033 0.9905 35 1 2.3752 1.9574 2.0684 36 1 3.5495 -0.0796 2.5988 37 1 4.1302 -0.2833 0.9119 38 1 2.3286 -2.7859 2.7590 39 1 3.6640 -4.5118 0.9663 40 1 1.9194 -4.8542 0.8795 41 1 3.5355 -4.4886 4.6796 42 1 4.4083 -3.8772 3.2455 43 1 5.3972 -5.9011 4.8327 44 1 5.7396 -5.8038 3.0779 45 1 3.5976 -7.4614 4.5104 46 1 4.7605 -7.9898 3.2520 47 1 -0.3225 -7.9024 1.4864 48 1 0.1767 -6.3743 2.1935 49 1 0.1901 -7.0131 3.8619 50 1 1.6526 -5.3318 4.6328 51 1 0.8771 -4.4201 3.3000 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094379889.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:00 Heat of formation + Delta-G solvation = -11.902998 kcal Electronic energy + Delta-G solvation = -28740.772408 eV Core-core repulsion = 25061.006329 eV Total energy + Delta-G solvation = -3679.766079 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.40334 -39.55150 -37.90675 -34.84340 -34.10093 -32.40274 -31.86706 -30.56947 -29.68375 -27.78919 -26.54675 -25.94554 -24.58576 -23.79560 -22.33321 -21.40999 -20.29988 -20.21278 -19.71873 -18.38632 -17.57633 -17.31202 -16.41667 -15.53988 -15.38107 -15.22605 -14.90558 -14.44984 -14.17775 -13.79644 -13.65013 -13.60307 -13.58807 -13.30476 -13.17479 -12.93976 -12.71590 -12.35368 -12.16254 -11.82443 -11.62984 -11.57136 -11.50920 -11.38113 -11.19121 -11.08756 -10.71879 -10.63124 -10.43555 -10.31235 -10.19183 -10.02356 -9.93621 -9.81386 -9.63931 -9.49529 -8.85291 -8.53435 -8.30787 -6.88669 -6.05897 -3.07328 2.72946 3.07997 3.52778 3.56437 3.74391 3.87141 4.23625 4.34541 4.57586 4.61628 4.76949 4.82805 4.89176 4.92882 4.95165 5.08649 5.11342 5.21773 5.34308 5.37482 5.45215 5.46883 5.47721 5.51050 5.64166 5.64413 5.71549 5.73780 5.77957 5.85720 5.92689 5.97293 6.04349 6.10295 6.17662 6.28864 6.33614 6.36647 6.50957 6.55424 6.63749 6.68438 6.75374 6.78573 6.94234 7.08281 7.14708 7.64728 7.88653 8.40678 8.55051 9.08327 9.87859 10.42376 11.25726 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.019239 B = 0.003168 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.995154 B = 8836.086530 C = 9812.785588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.512 5.512 3 C 0.043 3.957 4 C -0.141 4.141 5 C -0.116 4.116 6 C 0.054 3.946 7 H 0.075 0.925 8 C 0.516 3.484 9 O -0.517 6.517 10 N -0.727 5.727 11 C 0.143 3.857 12 C -0.080 4.080 13 C -0.110 4.110 14 C -0.123 4.123 15 C -0.129 4.129 16 C 0.171 3.829 17 H 0.048 0.952 18 N -0.592 5.592 19 C -0.337 4.337 20 H 0.065 0.935 21 C -0.025 4.025 22 N -0.912 5.912 23 Si 1.059 2.941 24 H -0.287 1.287 25 H -0.294 1.294 26 H -0.295 1.295 27 C 0.147 3.853 28 C -0.122 4.122 29 H 0.027 0.973 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.396 0.604 39 H 0.065 0.935 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.070 0.930 46 H 0.054 0.946 47 H 0.269 0.731 48 H 0.024 0.976 49 H 0.043 0.957 50 H 0.065 0.935 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.151 21.053 3.901 22.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.236 5.236 3 C -0.084 4.084 4 C -0.179 4.179 5 C -0.154 4.154 6 C -0.058 4.058 7 H 0.093 0.907 8 C 0.301 3.699 9 O -0.390 6.390 10 N -0.380 5.380 11 C 0.020 3.980 12 C -0.081 4.081 13 C -0.148 4.148 14 C -0.161 4.161 15 C -0.169 4.169 16 C 0.064 3.936 17 H 0.065 0.935 18 N -0.317 5.317 19 C -0.464 4.464 20 H 0.083 0.917 21 C -0.227 4.227 22 N -0.553 5.553 23 Si 0.889 3.111 24 H -0.212 1.212 25 H -0.221 1.221 26 H -0.223 1.223 27 C 0.021 3.979 28 C -0.160 4.160 29 H 0.045 0.955 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.230 0.770 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.089 0.911 46 H 0.073 0.927 47 H 0.080 0.920 48 H 0.042 0.958 49 H 0.061 0.939 50 H 0.083 0.917 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.173 19.269 2.794 20.426 hybrid contribution 0.784 1.575 0.880 1.967 sum 6.957 20.844 3.674 22.280 Atomic orbital electron populations 1.22571 0.86904 1.02675 1.00544 1.63067 1.08165 1.13554 1.38831 1.22862 0.98018 0.88801 0.98743 1.22786 1.00255 0.96666 0.98184 1.22650 0.96285 0.94335 1.02156 1.22535 0.97848 0.92725 0.92718 0.90736 1.20282 0.77351 0.86639 0.85674 1.90708 1.48321 1.80507 1.19497 1.46063 1.73307 1.09209 1.09395 1.21287 1.01307 0.79038 0.96366 1.21846 0.96010 0.96220 0.94042 1.22143 0.95809 0.97942 0.98867 1.22309 0.97482 0.95761 1.00534 1.22969 0.97544 0.95714 1.00678 1.21547 0.88943 0.87375 0.95767 0.93465 1.44418 1.04356 1.03053 1.79876 1.19671 0.94991 0.80349 1.51410 0.91719 1.25654 0.92761 1.05176 0.99119 1.70793 1.35785 1.16141 1.32591 0.83599 0.75823 0.75353 0.76291 1.21225 1.22082 1.22257 1.21222 0.91377 0.87931 0.97342 1.22580 0.95236 0.99111 0.99110 0.95455 0.90928 0.91116 0.90153 0.92396 0.90227 0.91177 0.89962 0.89892 0.76981 0.91656 0.91143 0.91791 0.92183 0.92445 0.92288 0.91130 0.92705 0.91963 0.95786 0.93892 0.91664 0.92131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.12 60.06 0.55 0.76 16 2 N -0.51 -5.88 4.69 -232.98 -1.09 -6.97 16 3 C 0.04 0.37 6.90 -2.84 -0.02 0.35 16 4 C -0.14 -0.95 6.94 -24.91 -0.17 -1.12 16 5 C -0.12 -0.96 6.48 -24.59 -0.16 -1.12 16 6 C 0.05 0.57 2.84 -67.33 -0.19 0.38 16 7 H 0.07 0.67 7.77 -51.93 -0.40 0.27 16 8 C 0.52 7.39 7.11 -10.99 -0.08 7.31 16 9 O -0.52 -9.87 16.59 5.56 0.09 -9.77 16 10 N -0.73 -9.38 4.63 -60.30 -0.28 -9.66 16 11 C 0.14 2.29 4.47 -4.04 -0.02 2.27 16 12 C -0.08 -1.28 0.53 -153.05 -0.08 -1.36 16 13 C -0.11 -1.42 5.57 -25.88 -0.14 -1.56 16 14 C -0.12 -1.69 6.85 -25.18 -0.17 -1.86 16 15 C -0.13 -2.31 6.22 -24.80 -0.15 -2.46 16 16 C 0.17 3.45 3.57 -65.85 -0.24 3.21 16 17 H 0.05 1.02 7.96 -51.93 -0.41 0.61 16 18 N -0.59 -14.59 2.90 -162.31 -0.47 -15.06 16 19 C -0.34 -9.40 9.67 -15.06 -0.15 -9.54 16 20 H 0.06 1.81 7.99 -52.49 -0.42 1.39 16 21 C -0.02 -0.71 5.06 -17.43 -0.09 -0.80 16 22 N -0.91 -27.73 12.98 55.49 0.72 -27.01 16 23 Si 1.06 25.56 30.02 -169.99 -5.10 20.46 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.30 -6.88 7.11 56.52 0.40 -6.48 16 27 C 0.15 3.36 5.44 -3.27 -0.02 3.34 16 28 C -0.12 -2.06 5.83 -25.64 -0.15 -2.21 16 29 H 0.03 0.23 8.09 -51.93 -0.42 -0.19 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.41 7.58 -51.93 -0.39 0.02 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.80 8.05 -51.93 -0.42 0.39 16 38 H 0.40 4.06 7.66 -40.82 -0.31 3.74 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.06 0.76 7.27 -51.93 -0.38 0.38 16 42 H 0.06 0.69 7.44 -51.93 -0.39 0.30 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.07 1.38 8.06 -51.93 -0.42 0.96 16 46 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.27 8.24 6.09 -40.82 -0.25 8.00 16 48 H 0.02 0.61 6.52 -51.92 -0.34 0.27 16 49 H 0.04 1.08 8.08 -51.93 -0.42 0.66 16 50 H 0.06 1.04 7.41 -51.93 -0.38 0.65 16 51 H 0.06 0.91 7.24 -51.93 -0.38 0.53 16 LS Contribution 388.52 15.07 5.85 5.85 Total: -1.00 -33.55 388.52 -10.73 -44.29 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -9.18 Total: 2.28 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -1.28 Total: -4.41 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: -1.12 Total: -58.70 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 25.56 SS G_CDS: -5.10 Total: 20.46 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.55 -10.73 -44.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094379889.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.384 kcal (2) G-P(sol) polarization free energy of solvation -33.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds