Wall clock time and date at job start Fri Apr 10 2020 18:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47443 * 110.99893 * 2 1 4 4 C 1.54314 * 107.23178 * 123.25864 * 3 2 1 5 5 C 1.55142 * 103.02375 * 22.28388 * 4 3 2 6 6 C 1.47846 * 110.99863 * 120.84422 * 2 1 3 7 7 H 1.09000 * 110.37732 * 332.57440 * 6 2 1 8 8 C 1.50703 * 110.37598 * 94.80741 * 6 2 1 9 9 O 1.21277 * 119.99671 * 18.54856 * 8 6 2 10 10 N 1.34770 * 119.99949 * 198.54565 * 8 6 2 11 11 C 1.46499 * 120.00166 * 180.02562 * 10 8 6 12 12 C 1.52998 * 109.47346 * 179.97438 * 11 10 8 13 13 C 1.53355 * 111.22722 * 299.52274 * 12 11 10 14 14 C 1.54267 * 106.46683 * 242.71963 * 13 12 11 15 15 C 1.54679 * 104.11603 * 333.97071 * 14 13 12 16 16 C 1.54575 * 111.31841 * 179.97438 * 12 11 10 17 17 H 1.09001 * 112.69025 * 18.64251 * 16 12 11 18 18 N 1.46891 * 107.36959 * 255.04951 * 16 12 11 19 19 C 1.36940 * 125.24984 * 181.65312 * 18 16 12 20 20 H 1.07997 * 119.99785 * 15.49792 * 19 18 16 21 21 C 1.38810 * 120.00116 * 195.49435 * 19 18 16 22 22 N 1.31623 * 119.99641 * 31.21254 * 21 19 18 23 23 Si 1.86800 * 120.00239 * 210.93380 * 21 19 18 24 24 H 1.48502 * 109.46930 * 180.27489 * 23 21 19 25 25 H 1.48497 * 109.47035 * 300.27587 * 23 21 19 26 26 H 1.48495 * 109.46831 * 60.27572 * 23 21 19 27 27 C 1.46732 * 109.49682 * 1.91884 * 18 16 12 28 28 C 1.53868 * 111.73436 * 63.25476 * 12 11 10 29 29 H 1.08990 * 109.47328 * 299.15623 * 1 2 3 30 30 H 1.09000 * 109.46786 * 59.16152 * 1 2 3 31 31 H 1.09004 * 109.47184 * 179.15603 * 1 2 3 32 32 H 1.09005 * 109.88659 * 242.66284 * 3 2 1 33 33 H 1.08995 * 109.88563 * 3.68495 * 3 2 1 34 34 H 1.08998 * 110.70496 * 140.66666 * 4 3 2 35 35 H 1.08999 * 110.70276 * 263.72575 * 4 3 2 36 36 H 1.09003 * 110.99279 * 206.25723 * 5 4 3 37 37 H 1.08995 * 110.99373 * 82.43579 * 5 4 3 38 38 H 0.97005 * 120.00019 * 359.97438 * 10 8 6 39 39 H 1.09000 * 109.47275 * 59.99760 * 11 10 8 40 40 H 1.09003 * 109.46876 * 299.99601 * 11 10 8 41 41 H 1.09004 * 110.05431 * 123.47735 * 13 12 11 42 42 H 1.08998 * 110.05882 * 1.97585 * 13 12 11 43 43 H 1.08991 * 110.50532 * 215.30180 * 14 13 12 44 44 H 1.09006 * 110.61331 * 92.68009 * 14 13 12 45 45 H 1.09004 * 110.61097 * 278.82220 * 15 14 13 46 46 H 1.09005 * 110.61447 * 155.84412 * 15 14 13 47 47 H 0.97002 * 120.00276 * 5.26673 * 22 21 19 48 48 H 1.09012 * 110.04343 * 100.24767 * 27 18 16 49 49 H 1.09004 * 110.04151 * 221.70045 * 27 18 16 50 50 H 1.09000 * 110.57169 * 212.77009 * 28 12 11 51 51 H 1.09000 * 110.57477 * 335.49523 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3765 0.0000 4 6 2.9158 1.5136 1.2325 5 6 3.3048 0.0444 1.5438 6 6 1.9988 -0.7077 1.1851 7 1 1.2881 -0.6519 2.0096 8 6 2.2974 -2.1457 0.8474 9 8 2.4209 -2.4836 -0.3107 10 7 2.4271 -3.0562 1.8326 11 6 2.7179 -4.4541 1.5044 12 6 2.8147 -5.2712 2.7943 13 6 3.9365 -4.7484 3.6999 14 6 4.9600 -5.8948 3.8343 15 6 4.1249 -7.1755 3.6003 16 6 3.1206 -6.7569 2.4967 17 1 3.5277 -6.9104 1.4973 18 7 1.8764 -7.5104 2.7016 19 6 1.7428 -8.8667 2.5685 20 1 2.6203 -9.4957 2.5416 21 6 0.4795 -9.4332 2.4682 22 7 -0.5001 -8.7609 1.9017 23 14 0.1716 -11.1526 3.1302 24 1 -1.2465 -11.5264 2.8963 25 1 1.0593 -12.1176 2.4333 26 1 0.4571 -11.1804 4.5872 27 6 0.7974 -6.5846 3.0646 28 6 1.4788 -5.2918 3.5575 29 1 -0.3633 0.5006 0.8974 30 1 -0.3633 0.5268 -0.8824 31 1 -0.3634 -1.0276 -0.0151 32 1 2.5697 1.5540 -0.9106 33 1 1.1753 2.0892 0.0659 34 1 3.8000 2.1033 0.9905 35 1 2.3752 1.9574 2.0684 36 1 3.5495 -0.0796 2.5988 37 1 4.1302 -0.2833 0.9119 38 1 2.3286 -2.7859 2.7590 39 1 3.6640 -4.5118 0.9663 40 1 1.9194 -4.8542 0.8795 41 1 3.5355 -4.4886 4.6796 42 1 4.4083 -3.8772 3.2455 43 1 5.3972 -5.9011 4.8327 44 1 5.7396 -5.8038 3.0779 45 1 3.5976 -7.4614 4.5104 46 1 4.7605 -7.9898 3.2520 47 1 -0.3225 -7.9024 1.4864 48 1 0.1767 -6.3743 2.1935 49 1 0.1901 -7.0131 3.8619 50 1 1.6526 -5.3318 4.6328 51 1 0.8771 -4.4201 3.3000 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094379889.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:59 Heat of formation + Delta-G solvation = -35.010851 kcal Electronic energy + Delta-G solvation = -28741.774439 eV Core-core repulsion = 25061.006329 eV Total energy + Delta-G solvation = -3680.768110 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.60064 -40.75991 -38.92439 -36.54708 -35.47690 -33.62553 -33.06041 -32.12798 -30.73974 -29.10984 -28.18749 -26.68936 -25.88164 -25.70446 -23.33212 -22.12290 -21.87388 -21.50230 -20.94831 -19.74996 -19.47984 -18.44675 -17.29994 -16.80712 -16.52838 -16.40782 -16.23422 -15.72389 -15.57176 -15.23165 -15.12366 -15.05580 -14.65971 -14.53658 -14.30653 -14.09725 -13.74961 -13.58471 -13.26024 -13.12282 -12.99039 -12.78979 -12.52182 -12.45941 -12.30306 -12.27235 -12.08137 -11.94729 -11.88883 -11.66896 -11.64747 -11.59789 -11.52068 -11.50419 -11.21018 -10.78566 -10.45486 -10.10831 -9.29200 -8.97949 -8.32014 -5.29759 1.54757 1.62649 1.63280 1.81697 2.03156 2.64079 3.06686 3.15856 3.37026 3.52647 3.58161 3.61647 3.65794 3.82441 3.98374 4.05607 4.16080 4.19566 4.26744 4.33128 4.37142 4.39670 4.42971 4.48774 4.54507 4.56610 4.68040 4.72923 4.77535 4.86647 4.90120 4.93264 4.94863 4.96205 4.99807 5.07678 5.07999 5.11253 5.22092 5.30387 5.33618 5.35681 5.40444 5.45760 5.56394 5.73608 5.85912 6.05290 6.31899 6.61906 6.93857 7.31906 7.75047 8.32054 8.97789 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.019239 B = 0.003168 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.995154 B = 8836.086530 C = 9812.785588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.548 5.548 3 C 0.040 3.960 4 C -0.131 4.131 5 C -0.112 4.112 6 C 0.057 3.943 7 H 0.100 0.900 8 C 0.513 3.487 9 O -0.574 6.574 10 N -0.709 5.709 11 C 0.156 3.844 12 C -0.065 4.065 13 C -0.100 4.100 14 C -0.112 4.112 15 C -0.123 4.123 16 C 0.153 3.847 17 H 0.022 0.978 18 N -0.612 5.612 19 C -0.340 4.340 20 H 0.058 0.942 21 C -0.082 4.082 22 N -0.943 5.943 23 Si 1.112 2.888 24 H -0.294 1.294 25 H -0.277 1.277 26 H -0.279 1.279 27 C 0.150 3.850 28 C -0.105 4.105 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.044 0.956 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.111 0.889 37 H 0.063 0.937 38 H 0.415 0.585 39 H 0.060 0.940 40 H 0.024 0.976 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.068 0.932 45 H 0.054 0.946 46 H 0.043 0.957 47 H 0.252 0.748 48 H -0.012 1.012 49 H 0.013 0.987 50 H 0.089 0.911 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.941 23.824 6.927 26.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.273 5.273 3 C -0.087 4.087 4 C -0.169 4.169 5 C -0.150 4.150 6 C -0.054 4.054 7 H 0.117 0.883 8 C 0.300 3.700 9 O -0.452 6.452 10 N -0.363 5.363 11 C 0.031 3.969 12 C -0.066 4.066 13 C -0.137 4.137 14 C -0.150 4.150 15 C -0.163 4.163 16 C 0.047 3.953 17 H 0.040 0.960 18 N -0.336 5.336 19 C -0.468 4.468 20 H 0.076 0.924 21 C -0.278 4.278 22 N -0.586 5.586 23 Si 0.937 3.063 24 H -0.220 1.220 25 H -0.203 1.203 26 H -0.205 1.205 27 C 0.024 3.976 28 C -0.143 4.143 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.130 0.870 37 H 0.082 0.918 38 H 0.253 0.747 39 H 0.078 0.922 40 H 0.043 0.957 41 H 0.109 0.891 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.087 0.913 45 H 0.073 0.927 46 H 0.062 0.938 47 H 0.062 0.938 48 H 0.005 0.995 49 H 0.031 0.969 50 H 0.107 0.893 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.008 22.083 5.868 24.211 hybrid contribution 0.245 0.684 -0.186 0.750 sum 8.253 22.766 5.682 24.874 Atomic orbital electron populations 1.22524 0.86587 1.01381 1.01927 1.62935 1.08828 1.15528 1.39969 1.22911 0.98829 0.87478 0.99447 1.22778 1.00498 0.95815 0.97779 1.22699 0.94125 0.94749 1.03476 1.22574 0.99861 0.89888 0.93107 0.88270 1.21147 0.75749 0.88311 0.84838 1.90685 1.50876 1.81672 1.21950 1.45838 1.72570 1.07532 1.10369 1.20920 0.99343 0.80818 0.95831 1.21720 0.97019 0.93417 0.94408 1.22139 0.94026 0.98247 0.99315 1.22272 0.97189 0.93033 1.02468 1.22800 0.97098 0.97898 0.98501 1.21845 0.87812 0.90126 0.95530 0.96021 1.44694 1.06342 1.02738 1.79843 1.19921 0.94731 0.82326 1.49860 0.92412 1.27065 0.92891 1.08531 0.99313 1.70919 1.36503 1.16112 1.35076 0.82892 0.75455 0.71430 0.76529 1.21969 1.20257 1.20528 1.21133 0.91022 0.90455 0.95010 1.22505 0.95157 0.96310 1.00312 0.93187 0.90446 0.93679 0.91214 0.90832 0.88945 0.89147 0.87024 0.91798 0.74729 0.92161 0.95743 0.89144 0.89577 0.89719 0.91329 0.92704 0.93809 0.93813 0.99452 0.96907 0.89268 0.89836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.12 127.69 1.17 1.63 16 2 N -0.55 -11.93 4.69 -891.00 -4.18 -16.11 16 3 C 0.04 0.60 6.90 86.64 0.60 1.19 16 4 C -0.13 -1.27 6.94 31.77 0.22 -1.05 16 5 C -0.11 -1.47 6.48 31.98 0.21 -1.26 16 6 C 0.06 1.10 2.84 44.64 0.13 1.22 16 7 H 0.10 1.41 7.77 -2.39 -0.02 1.39 16 8 C 0.51 14.36 7.11 87.66 0.62 14.98 16 9 O -0.57 -22.72 16.59 -3.02 -0.05 -22.77 16 10 N -0.71 -17.11 4.63 -463.07 -2.14 -19.26 16 11 C 0.16 5.00 4.47 86.38 0.39 5.38 16 12 C -0.06 -1.98 0.53 -51.23 -0.03 -2.00 16 13 C -0.10 -2.12 5.57 31.14 0.17 -1.95 16 14 C -0.11 -2.65 6.85 31.60 0.22 -2.44 16 15 C -0.12 -4.30 6.22 31.84 0.20 -4.10 16 16 C 0.15 6.31 3.57 46.13 0.16 6.47 16 17 H 0.02 1.00 7.96 -2.39 -0.02 0.98 16 18 N -0.61 -31.48 2.90 -667.43 -1.94 -33.41 16 19 C -0.34 -19.76 9.67 84.03 0.81 -18.94 16 20 H 0.06 3.36 7.99 -2.91 -0.02 3.34 16 21 C -0.08 -4.88 5.06 84.86 0.43 -4.45 16 22 N -0.94 -60.40 12.98 21.65 0.28 -60.12 16 23 Si 1.11 52.94 30.02 68.60 2.06 54.99 16 24 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 25 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 26 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 27 C 0.15 7.17 5.44 86.75 0.47 7.64 16 28 C -0.10 -3.40 5.83 31.30 0.18 -3.22 16 29 H 0.05 0.71 8.09 -2.39 -0.02 0.69 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.07 1.14 8.14 -2.38 -0.02 1.13 16 33 H 0.07 0.84 7.58 -2.39 -0.02 0.82 16 34 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.06 1.10 8.05 -2.39 -0.02 1.08 16 38 H 0.42 6.88 7.66 -92.70 -0.71 6.17 16 39 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.09 1.57 7.27 -2.38 -0.02 1.55 16 42 H 0.09 1.48 7.44 -2.39 -0.02 1.47 16 43 H 0.08 1.64 8.14 -2.39 -0.02 1.63 16 44 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 45 H 0.05 2.08 8.06 -2.38 -0.02 2.07 16 46 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 47 H 0.25 16.58 6.09 -92.71 -0.56 16.01 16 48 H -0.01 -0.66 6.52 -2.38 -0.02 -0.68 16 49 H 0.01 0.67 8.08 -2.38 -0.02 0.65 16 50 H 0.09 2.54 7.41 -2.39 -0.02 2.52 16 51 H 0.08 2.34 7.24 -2.39 -0.02 2.32 16 Total: -1.00 -81.17 388.52 0.37 -80.80 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.39 Total: 16.78 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: 5.95 Total: -0.89 kcal Atomic # 7 Polarization: -120.93 SS G_CDS: -7.98 Total: -128.91 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -0.05 Total: -22.77 kcal Atomic # 14 Polarization: 52.94 SS G_CDS: 2.06 Total: 54.99 kcal Total: -81.17 0.37 -80.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094379889.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.788 kcal (2) G-P(sol) polarization free energy of solvation -81.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds