Wall clock time and date at job start Fri Apr 10 2020 18:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 110.37618 * 2 1 4 4 C 1.54004 * 110.32800 * 237.81081 * 2 1 3 5 5 N 1.47491 * 107.08304 * 242.41596 * 4 2 1 6 6 C 1.34781 * 127.03204 * 154.51544 * 5 4 2 7 7 O 1.21276 * 120.00004 * 185.02227 * 6 5 4 8 8 C 1.50701 * 119.99955 * 5.02341 * 6 5 4 9 9 C 1.56236 * 116.69320 * 57.09933 * 8 6 5 10 10 C 1.54660 * 103.21536 * 159.89601 * 9 8 6 11 11 N 1.49520 * 105.28368 * 0.66079 * 10 9 8 12 12 C 1.49528 * 105.91952 * 71.26124 * 11 10 9 13 13 C 1.54652 * 105.28247 * 288.73512 * 12 11 10 14 14 C 1.50461 * 102.03641 * 324.84908 * 11 10 9 15 15 C 1.48113 * 105.93174 * 334.77415 * 5 4 2 16 16 C 1.54595 * 103.42264 * 39.02944 * 15 5 4 17 17 H 1.09004 * 110.58047 * 81.16255 * 16 15 5 18 18 C 1.52999 * 110.98943 * 204.37275 * 16 15 5 19 19 C 1.53001 * 109.47069 * 288.65109 * 18 16 15 20 20 N 1.46495 * 109.47139 * 180.02562 * 19 18 16 21 21 C 1.36941 * 119.99844 * 179.97438 * 20 19 18 22 22 H 1.08001 * 119.99997 * 0.02562 * 21 20 19 23 23 C 1.38817 * 119.99727 * 179.97438 * 21 20 19 24 24 N 1.31615 * 120.00397 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99691 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47347 * 59.99978 * 25 23 21 27 27 H 1.48501 * 109.47276 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.46959 * 299.99780 * 25 23 21 29 29 H 1.08999 * 109.47436 * 180.73263 * 1 2 3 30 30 H 1.09003 * 109.47076 * 300.73823 * 1 2 3 31 31 H 1.09005 * 109.47104 * 60.73610 * 1 2 3 32 32 H 1.08996 * 109.91639 * 123.05173 * 4 2 1 33 33 H 1.09005 * 110.07304 * 1.86058 * 4 2 1 34 34 H 1.08996 * 110.67419 * 278.33020 * 9 8 6 35 35 H 1.09004 * 110.67068 * 41.46777 * 9 8 6 36 36 H 1.08997 * 110.27986 * 241.70575 * 10 9 8 37 37 H 1.08999 * 110.27731 * 119.61618 * 10 9 8 38 38 H 1.09002 * 110.27396 * 169.78511 * 12 11 10 39 39 H 1.08994 * 110.35866 * 47.73178 * 12 11 10 40 40 H 1.09001 * 110.66873 * 240.91197 * 13 12 11 41 41 H 1.08999 * 110.81297 * 117.84735 * 13 12 11 42 42 H 1.08993 * 111.90959 * 297.81217 * 14 11 10 43 43 H 1.08999 * 111.90999 * 171.59720 * 14 11 10 44 44 H 1.08998 * 110.66022 * 157.50657 * 15 5 4 45 45 H 1.08994 * 110.66530 * 280.62271 * 15 5 4 46 46 H 1.09003 * 109.47408 * 48.64877 * 18 16 15 47 47 H 1.09002 * 109.47559 * 168.64969 * 18 16 15 48 48 H 1.09003 * 109.46835 * 299.99573 * 19 18 16 49 49 H 1.08994 * 109.47218 * 59.99818 * 19 18 16 50 50 H 0.97001 * 120.00217 * 0.02562 * 20 19 18 51 51 H 0.97000 * 120.00245 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9095 1.0218 0.0000 4 6 2.0650 -0.7693 -1.2222 5 7 2.8276 -1.9224 -0.7084 6 6 3.0613 -3.0887 -1.3424 7 8 3.6302 -3.9900 -0.7639 8 6 2.6155 -3.2726 -2.7702 9 6 3.1584 -2.2436 -3.8130 10 6 2.9748 -2.9771 -5.1621 11 7 2.3578 -4.2938 -4.8141 12 6 0.9530 -3.9919 -4.4001 13 6 1.0745 -3.2897 -3.0276 14 6 3.0124 -4.6085 -3.4964 15 6 3.2789 -1.5391 0.6493 16 6 2.0671 -0.7725 1.2270 17 1 1.3174 -1.4684 1.6034 18 6 2.5053 0.1960 2.3275 19 6 2.9135 -0.5962 3.5711 20 7 3.3326 0.3310 4.6250 21 6 3.7436 -0.1523 5.8386 22 1 3.7592 -1.2171 6.0186 23 6 4.1412 0.7263 6.8370 24 7 4.1226 2.0239 6.6176 25 14 4.7025 0.0670 8.4922 26 1 5.8818 -0.8147 8.2998 27 1 5.0708 1.2008 9.3777 28 1 3.6005 -0.7093 9.1154 29 1 -0.3634 -1.0275 0.0131 30 1 -0.3633 0.5253 0.8833 31 1 -0.3633 0.5024 -0.8965 32 1 2.7180 -0.1244 -1.8101 33 1 1.2354 -1.1174 -1.8376 34 1 2.5701 -1.3263 -3.7906 35 1 4.2119 -2.0308 -3.6311 36 1 3.9404 -3.1280 -5.6446 37 1 2.3108 -2.4090 -5.8136 38 1 0.3812 -4.9148 -4.3032 39 1 0.4789 -3.3285 -5.1234 40 1 0.5617 -3.8631 -2.2553 41 1 0.6812 -2.2743 -3.0759 42 1 4.0929 -4.7129 -3.5937 43 1 2.5652 -5.4799 -3.0179 44 1 3.4934 -2.4246 1.2475 45 1 4.1523 -0.8894 0.5952 46 1 3.3533 0.7845 1.9771 47 1 1.6789 0.8618 2.5759 48 1 2.0655 -1.1847 3.9216 49 1 3.7400 -1.2620 3.3228 50 1 3.3182 1.2874 4.4635 51 1 4.4008 2.6379 7.3151 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104914159.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:18 Heat of formation + Delta-G solvation = -4.024073 kcal Electronic energy + Delta-G solvation = -28072.053750 eV Core-core repulsion = 24392.629327 eV Total energy + Delta-G solvation = -3679.424423 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.59617 -39.79503 -37.93711 -35.16832 -33.34534 -32.09735 -31.29190 -31.14804 -30.03210 -28.51490 -27.13926 -26.64257 -24.46542 -22.96463 -22.80599 -21.85794 -21.07628 -20.50691 -20.08160 -19.06554 -17.11279 -16.96830 -16.53167 -16.23227 -15.78884 -15.66054 -15.01069 -14.65146 -14.28921 -13.92553 -13.74934 -13.59633 -13.34408 -13.27345 -13.23150 -13.13301 -12.91312 -12.61196 -12.50730 -12.15523 -12.10367 -11.86197 -11.76263 -11.63371 -11.40687 -11.25921 -11.07861 -10.94754 -10.81169 -10.71963 -10.60742 -10.46387 -10.30913 -10.00694 -9.93760 -9.65563 -9.47731 -8.84882 -8.81866 -6.90554 -5.75064 -3.03524 2.35340 2.71339 3.39791 3.45884 3.49812 3.51147 3.94722 4.05714 4.25136 4.34825 4.45503 4.56451 4.58068 4.62831 4.65590 4.68424 4.78437 4.94868 5.05856 5.11014 5.11522 5.24434 5.25065 5.30444 5.32664 5.39613 5.41105 5.45718 5.51471 5.53408 5.58447 5.59128 5.66784 5.71229 5.75562 5.84930 5.87200 5.97195 6.02025 6.05811 6.15060 6.19843 6.27151 6.37161 6.42374 6.85123 6.88846 7.37895 7.71719 7.97790 8.44293 9.55162 10.13373 10.47882 11.47928 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.025416 B = 0.002387 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.416760 B =11728.248238 C =12302.916830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.104 4.104 3 H 0.089 0.911 4 C 0.101 3.899 5 N -0.616 5.616 6 C 0.568 3.432 7 O -0.533 6.533 8 C -0.127 4.127 9 C -0.136 4.136 10 C 0.013 3.987 11 N -0.466 5.466 12 C 0.013 3.987 13 C -0.136 4.136 14 C 0.041 3.959 15 C 0.108 3.892 16 C -0.090 4.090 17 H 0.083 0.917 18 C -0.114 4.114 19 C 0.152 3.848 20 N -0.734 5.734 21 C -0.239 4.239 22 H 0.069 0.931 23 C -0.015 4.015 24 N -0.935 5.935 25 Si 0.907 3.093 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.087 0.913 45 H 0.076 0.924 46 H 0.065 0.935 47 H 0.068 0.932 48 H 0.017 0.983 49 H 0.019 0.981 50 H 0.383 0.617 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.275 -6.406 -27.149 29.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 H 0.107 0.893 4 C -0.022 4.022 5 N -0.349 5.349 6 C 0.356 3.644 7 O -0.409 6.409 8 C -0.132 4.132 9 C -0.175 4.175 10 C -0.116 4.116 11 N -0.185 5.185 12 C -0.115 4.115 13 C -0.175 4.175 14 C -0.088 4.088 15 C -0.014 4.014 16 C -0.110 4.110 17 H 0.101 0.899 18 C -0.152 4.152 19 C 0.024 3.976 20 N -0.378 5.378 21 C -0.370 4.370 22 H 0.087 0.913 23 C -0.211 4.211 24 N -0.584 5.584 25 Si 0.738 3.262 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.213 1.213 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.106 0.894 45 H 0.095 0.905 46 H 0.084 0.916 47 H 0.086 0.914 48 H 0.035 0.965 49 H 0.037 0.963 50 H 0.217 0.783 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.856 -7.622 -27.350 29.459 hybrid contribution 0.202 0.880 1.619 1.853 sum -7.654 -6.742 -25.731 27.679 Atomic orbital electron populations 1.21837 0.94075 1.01924 1.02127 1.22174 0.96454 0.99826 0.93811 0.89292 1.22370 0.95478 0.87416 0.96903 1.48733 1.53571 1.14622 1.17995 1.18988 0.78776 0.80594 0.86065 1.90738 1.42660 1.40210 1.67333 1.23721 0.97631 0.99285 0.92516 1.23248 1.02226 0.97872 0.94181 1.23612 1.01260 0.90374 0.96350 1.70001 1.02561 1.22791 1.23189 1.23606 0.92371 1.00732 0.94836 1.23275 0.93345 1.01999 0.98907 1.24328 1.01020 0.95529 0.87964 1.22599 0.97025 0.99978 0.81766 1.22276 0.96986 0.97308 0.94447 0.89862 1.21720 1.01303 0.97621 0.94595 1.20672 0.96419 0.92811 0.87679 1.42355 1.79286 1.05112 1.11054 1.19205 1.35826 0.92112 0.89871 0.91258 1.24740 1.02477 0.95325 0.98536 1.69646 1.54352 1.00700 1.33713 0.86260 0.78581 0.77428 0.83896 1.21238 1.21679 1.21268 0.92657 0.91736 0.92678 0.91622 0.90640 0.90408 0.90679 0.89582 0.90204 0.89558 0.90191 0.90622 0.90322 0.88942 0.88832 0.89406 0.90539 0.91634 0.91370 0.96504 0.96345 0.78347 0.93495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.90 37.16 0.33 -0.82 16 2 C -0.10 -0.95 3.17 -89.25 -0.28 -1.23 16 3 H 0.09 0.79 7.85 -51.93 -0.41 0.38 16 4 C 0.10 0.85 5.19 -2.98 -0.02 0.83 16 5 N -0.62 -7.01 3.29 -169.98 -0.56 -7.57 16 6 C 0.57 7.17 7.36 -10.98 -0.08 7.09 16 7 O -0.53 -8.90 16.81 5.56 0.09 -8.81 16 8 C -0.13 -1.14 0.98 -149.93 -0.15 -1.29 16 9 C -0.14 -0.96 5.45 -24.12 -0.13 -1.09 16 10 C 0.01 0.08 6.61 -1.49 -0.01 0.07 16 11 N -0.47 -3.76 6.94 -222.06 -1.54 -5.31 16 12 C 0.01 0.09 6.61 -1.49 -0.01 0.08 16 13 C -0.14 -0.97 5.39 -24.12 -0.13 -1.10 16 14 C 0.04 0.38 6.13 0.43 0.00 0.38 16 15 C 0.11 1.40 5.95 -2.32 -0.01 1.38 16 16 C -0.09 -1.09 2.56 -88.93 -0.23 -1.31 16 17 H 0.08 1.06 7.86 -51.93 -0.41 0.65 16 18 C -0.11 -1.72 4.71 -26.73 -0.13 -1.84 16 19 C 0.15 3.04 6.15 -4.04 -0.02 3.01 16 20 N -0.73 -18.84 5.60 -59.91 -0.34 -19.18 16 21 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 22 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 23 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 24 N -0.94 -28.55 13.06 55.49 0.72 -27.83 16 25 Si 0.91 22.76 29.55 -169.99 -5.02 17.73 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 28 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 29 H 0.05 0.46 8.13 -51.93 -0.42 0.03 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.49 7.98 -51.93 -0.41 0.07 16 33 H 0.08 0.53 4.88 -51.93 -0.25 0.27 16 34 H 0.08 0.45 6.92 -51.93 -0.36 0.10 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.42 7.69 -51.93 -0.40 0.02 16 38 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.42 7.70 -51.93 -0.40 0.02 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.46 5.96 -51.93 -0.31 0.15 16 42 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.09 1.32 7.80 -51.93 -0.41 0.91 16 45 H 0.08 0.99 7.94 -51.93 -0.41 0.58 16 46 H 0.06 0.99 8.00 -51.93 -0.42 0.57 16 47 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.02 0.38 7.68 -51.93 -0.40 -0.02 16 50 H 0.38 10.22 7.67 -40.82 -0.31 9.91 16 51 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 LS Contribution 388.87 15.07 5.86 5.86 Total: -1.00 -33.17 388.87 -10.99 -44.16 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -9.09 Total: 4.29 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -1.11 Total: -3.35 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: -1.71 Total: -59.88 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.09 Total: -8.81 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.17 -10.99 -44.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104914159.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.131 kcal (2) G-P(sol) polarization free energy of solvation -33.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds