Wall clock time and date at job start Fri Apr 10 2020 18:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 110.37618 * 2 1 4 4 C 1.54004 * 110.32800 * 237.81081 * 2 1 3 5 5 N 1.47491 * 107.08304 * 242.41596 * 4 2 1 6 6 C 1.34781 * 127.03204 * 154.51544 * 5 4 2 7 7 O 1.21276 * 120.00004 * 185.02227 * 6 5 4 8 8 C 1.50701 * 119.99955 * 5.02341 * 6 5 4 9 9 C 1.56236 * 116.69320 * 57.09933 * 8 6 5 10 10 C 1.54660 * 103.21536 * 159.89601 * 9 8 6 11 11 N 1.49520 * 105.28368 * 0.66079 * 10 9 8 12 12 C 1.49528 * 105.91952 * 71.26124 * 11 10 9 13 13 C 1.54652 * 105.28247 * 288.73512 * 12 11 10 14 14 C 1.50461 * 102.03641 * 324.84908 * 11 10 9 15 15 C 1.48113 * 105.93174 * 334.77415 * 5 4 2 16 16 C 1.54595 * 103.42264 * 39.02944 * 15 5 4 17 17 H 1.09004 * 110.58047 * 81.16255 * 16 15 5 18 18 C 1.52999 * 110.98943 * 204.37275 * 16 15 5 19 19 C 1.53001 * 109.47069 * 288.65109 * 18 16 15 20 20 N 1.46495 * 109.47139 * 180.02562 * 19 18 16 21 21 C 1.36941 * 119.99844 * 179.97438 * 20 19 18 22 22 H 1.08001 * 119.99997 * 0.02562 * 21 20 19 23 23 C 1.38817 * 119.99727 * 179.97438 * 21 20 19 24 24 N 1.31615 * 120.00397 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99691 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47347 * 59.99978 * 25 23 21 27 27 H 1.48501 * 109.47276 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.46959 * 299.99780 * 25 23 21 29 29 H 1.08999 * 109.47436 * 180.73263 * 1 2 3 30 30 H 1.09003 * 109.47076 * 300.73823 * 1 2 3 31 31 H 1.09005 * 109.47104 * 60.73610 * 1 2 3 32 32 H 1.08996 * 109.91639 * 123.05173 * 4 2 1 33 33 H 1.09005 * 110.07304 * 1.86058 * 4 2 1 34 34 H 1.08996 * 110.67419 * 278.33020 * 9 8 6 35 35 H 1.09004 * 110.67068 * 41.46777 * 9 8 6 36 36 H 1.08997 * 110.27986 * 241.70575 * 10 9 8 37 37 H 1.08999 * 110.27731 * 119.61618 * 10 9 8 38 38 H 1.09002 * 110.27396 * 169.78511 * 12 11 10 39 39 H 1.08994 * 110.35866 * 47.73178 * 12 11 10 40 40 H 1.09001 * 110.66873 * 240.91197 * 13 12 11 41 41 H 1.08999 * 110.81297 * 117.84735 * 13 12 11 42 42 H 1.08993 * 111.90959 * 297.81217 * 14 11 10 43 43 H 1.08999 * 111.90999 * 171.59720 * 14 11 10 44 44 H 1.08998 * 110.66022 * 157.50657 * 15 5 4 45 45 H 1.08994 * 110.66530 * 280.62271 * 15 5 4 46 46 H 1.09003 * 109.47408 * 48.64877 * 18 16 15 47 47 H 1.09002 * 109.47559 * 168.64969 * 18 16 15 48 48 H 1.09003 * 109.46835 * 299.99573 * 19 18 16 49 49 H 1.08994 * 109.47218 * 59.99818 * 19 18 16 50 50 H 0.97001 * 120.00217 * 0.02562 * 20 19 18 51 51 H 0.97000 * 120.00245 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9095 1.0218 0.0000 4 6 2.0650 -0.7693 -1.2222 5 7 2.8276 -1.9224 -0.7084 6 6 3.0613 -3.0887 -1.3424 7 8 3.6302 -3.9900 -0.7639 8 6 2.6155 -3.2726 -2.7702 9 6 3.1584 -2.2436 -3.8130 10 6 2.9748 -2.9771 -5.1621 11 7 2.3578 -4.2938 -4.8141 12 6 0.9530 -3.9919 -4.4001 13 6 1.0745 -3.2897 -3.0276 14 6 3.0124 -4.6085 -3.4964 15 6 3.2789 -1.5391 0.6493 16 6 2.0671 -0.7725 1.2270 17 1 1.3174 -1.4684 1.6034 18 6 2.5053 0.1960 2.3275 19 6 2.9135 -0.5962 3.5711 20 7 3.3326 0.3310 4.6250 21 6 3.7436 -0.1523 5.8386 22 1 3.7592 -1.2171 6.0186 23 6 4.1412 0.7263 6.8370 24 7 4.1226 2.0239 6.6176 25 14 4.7025 0.0670 8.4922 26 1 5.8818 -0.8147 8.2998 27 1 5.0708 1.2008 9.3777 28 1 3.6005 -0.7093 9.1154 29 1 -0.3634 -1.0275 0.0131 30 1 -0.3633 0.5253 0.8833 31 1 -0.3633 0.5024 -0.8965 32 1 2.7180 -0.1244 -1.8101 33 1 1.2354 -1.1174 -1.8376 34 1 2.5701 -1.3263 -3.7906 35 1 4.2119 -2.0308 -3.6311 36 1 3.9404 -3.1280 -5.6446 37 1 2.3108 -2.4090 -5.8136 38 1 0.3812 -4.9148 -4.3032 39 1 0.4789 -3.3285 -5.1234 40 1 0.5617 -3.8631 -2.2553 41 1 0.6812 -2.2743 -3.0759 42 1 4.0929 -4.7129 -3.5937 43 1 2.5652 -5.4799 -3.0179 44 1 3.4934 -2.4246 1.2475 45 1 4.1523 -0.8894 0.5952 46 1 3.3533 0.7845 1.9771 47 1 1.6789 0.8618 2.5759 48 1 2.0655 -1.1847 3.9216 49 1 3.7400 -1.2620 3.3228 50 1 3.3182 1.2874 4.4635 51 1 4.4008 2.6379 7.3151 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104914159.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:17 Heat of formation + Delta-G solvation = -27.574631 kcal Electronic energy + Delta-G solvation = -28073.074979 eV Core-core repulsion = 24392.629327 eV Total energy + Delta-G solvation = -3680.445652 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.29523 -40.66410 -38.97941 -36.89977 -34.68445 -33.46625 -32.21852 -31.66247 -31.43453 -29.14407 -28.52036 -27.38260 -26.04479 -24.31714 -23.48019 -22.88595 -22.04029 -21.43586 -20.96812 -19.89310 -19.17436 -17.76231 -17.31886 -17.11835 -16.68419 -16.54199 -16.31306 -16.11406 -15.35945 -15.29020 -15.05150 -14.79756 -14.41362 -14.29292 -14.22523 -13.85465 -13.73329 -13.56038 -13.27377 -13.14224 -13.00489 -12.86697 -12.73369 -12.69439 -12.43621 -12.42545 -12.31774 -12.26025 -12.18569 -11.93881 -11.66683 -11.58404 -11.49560 -11.28300 -11.25022 -10.94188 -10.93549 -10.05948 -9.76801 -9.02962 -7.98136 -5.27113 1.41415 1.45006 1.48121 1.54385 1.81052 2.53732 2.77628 3.25358 3.35003 3.42415 3.49593 3.53934 3.71320 3.77140 3.88650 4.02623 4.07347 4.12233 4.19672 4.27804 4.30195 4.43907 4.44438 4.47909 4.49854 4.54479 4.60441 4.64021 4.66876 4.74583 4.77889 4.82065 4.87378 4.89232 4.91406 4.93762 4.99502 5.04744 5.09881 5.12515 5.17714 5.28179 5.35032 5.39707 5.46378 5.46653 5.53754 5.68243 6.24918 6.47144 7.01327 7.30953 8.06763 8.30895 9.25080 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.025416 B = 0.002387 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.416760 B =11728.248238 C =12302.916830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.096 4.096 3 H 0.099 0.901 4 C 0.101 3.899 5 N -0.613 5.613 6 C 0.562 3.438 7 O -0.588 6.588 8 C -0.129 4.129 9 C -0.128 4.128 10 C 0.015 3.985 11 N -0.476 5.476 12 C 0.016 3.984 13 C -0.129 4.129 14 C 0.037 3.963 15 C 0.106 3.894 16 C -0.081 4.081 17 H 0.076 0.924 18 C -0.098 4.098 19 C 0.150 3.850 20 N -0.746 5.746 21 C -0.251 4.251 22 H 0.070 0.930 23 C -0.073 4.073 24 N -0.967 5.967 25 Si 0.973 3.027 26 H -0.279 1.279 27 H -0.291 1.291 28 H -0.278 1.278 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.103 0.897 40 H 0.064 0.936 41 H 0.101 0.899 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.057 0.943 45 H 0.076 0.924 46 H 0.067 0.933 47 H 0.071 0.929 48 H 0.013 0.987 49 H 0.012 0.988 50 H 0.376 0.624 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.767 -5.452 -29.336 31.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.115 4.115 3 H 0.117 0.883 4 C -0.021 4.021 5 N -0.345 5.345 6 C 0.351 3.649 7 O -0.468 6.468 8 C -0.134 4.134 9 C -0.167 4.167 10 C -0.114 4.114 11 N -0.196 5.196 12 C -0.113 4.113 13 C -0.167 4.167 14 C -0.092 4.092 15 C -0.017 4.017 16 C -0.101 4.101 17 H 0.094 0.906 18 C -0.136 4.136 19 C 0.023 3.977 20 N -0.389 5.389 21 C -0.383 4.383 22 H 0.088 0.912 23 C -0.266 4.266 24 N -0.618 5.618 25 Si 0.802 3.198 26 H -0.206 1.206 27 H -0.217 1.217 28 H -0.204 1.204 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.121 0.879 38 H 0.103 0.897 39 H 0.121 0.879 40 H 0.083 0.917 41 H 0.120 0.880 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.075 0.925 45 H 0.094 0.906 46 H 0.085 0.915 47 H 0.090 0.910 48 H 0.031 0.969 49 H 0.030 0.970 50 H 0.208 0.792 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -9.378 -6.671 -29.576 31.736 hybrid contribution 0.675 0.530 2.283 2.438 sum -8.703 -6.141 -27.293 29.298 Atomic orbital electron populations 1.21830 0.92825 1.02045 1.03020 1.22161 0.97414 0.99834 0.92082 0.88286 1.22604 0.96243 0.86375 0.96841 1.48793 1.53287 1.15202 1.17224 1.19659 0.77890 0.80048 0.87299 1.90705 1.45199 1.42062 1.68820 1.23622 0.99418 0.99931 0.90443 1.23249 1.01938 0.98076 0.93441 1.23678 1.01795 0.89646 0.96237 1.69981 1.03458 1.24095 1.22074 1.23670 0.91516 1.01217 0.94889 1.23274 0.91313 1.03226 0.98920 1.24249 1.00365 0.95531 0.89057 1.22474 0.97622 0.98795 0.82783 1.22118 0.96379 0.96778 0.94854 0.90565 1.21548 1.01393 0.97538 0.93139 1.20836 0.95770 0.92594 0.88475 1.42565 1.79332 1.05477 1.11549 1.19583 1.35277 0.92305 0.91159 0.91191 1.25568 1.03212 0.95654 1.02156 1.69792 1.55574 1.01751 1.34658 0.85221 0.78298 0.76809 0.79499 1.20561 1.21686 1.20373 0.92883 0.92631 0.90104 0.89548 0.88347 0.88124 0.91663 0.89678 0.87909 0.89686 0.87853 0.91742 0.88039 0.90191 0.90227 0.92456 0.90590 0.91457 0.90997 0.96883 0.96962 0.79238 0.93825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.90 71.98 0.64 -1.16 16 2 C -0.10 -1.48 3.17 -9.90 -0.03 -1.51 16 3 H 0.10 1.41 7.85 -2.39 -0.02 1.39 16 4 C 0.10 1.36 5.19 86.53 0.45 1.81 16 5 N -0.61 -13.43 3.29 -810.09 -2.67 -16.10 16 6 C 0.56 14.24 7.36 87.66 0.65 14.89 16 7 O -0.59 -20.80 16.81 -3.02 -0.05 -20.85 16 8 C -0.13 -2.18 0.98 -49.21 -0.05 -2.23 16 9 C -0.13 -1.46 5.45 32.28 0.18 -1.29 16 10 C 0.01 0.15 6.61 86.36 0.57 0.72 16 11 N -0.48 -6.86 6.94 -856.47 -5.94 -12.80 16 12 C 0.02 0.16 6.61 86.35 0.57 0.73 16 13 C -0.13 -1.49 5.39 32.29 0.17 -1.31 16 14 C 0.04 0.70 6.13 87.06 0.53 1.23 16 15 C 0.11 2.78 5.95 86.61 0.52 3.29 16 16 C -0.08 -1.90 2.56 -9.70 -0.02 -1.92 16 17 H 0.08 1.91 7.86 -2.39 -0.02 1.89 16 18 C -0.10 -2.91 4.71 30.59 0.14 -2.77 16 19 C 0.15 6.11 6.15 86.38 0.53 6.64 16 20 N -0.75 -38.98 5.60 -343.46 -1.92 -40.90 16 21 C -0.25 -14.55 9.99 84.03 0.84 -13.71 16 22 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 23 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 24 N -0.97 -59.71 13.06 21.65 0.28 -59.42 16 25 Si 0.97 47.04 29.55 68.60 2.03 49.07 16 26 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 27 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 28 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 29 H 0.05 0.72 8.13 -2.39 -0.02 0.70 16 30 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.09 0.90 7.98 -2.39 -0.02 0.88 16 33 H 0.10 0.91 4.88 -2.38 -0.01 0.90 16 34 H 0.10 0.70 6.92 -2.39 -0.02 0.68 16 35 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.08 0.89 8.14 -2.39 -0.02 0.88 16 37 H 0.10 0.62 7.69 -2.39 -0.02 0.60 16 38 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.10 0.62 7.70 -2.39 -0.02 0.60 16 40 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.10 0.71 5.96 -2.39 -0.01 0.69 16 42 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.06 1.84 7.80 -2.39 -0.02 1.82 16 45 H 0.08 1.99 7.94 -2.39 -0.02 1.97 16 46 H 0.07 1.99 8.00 -2.39 -0.02 1.97 16 47 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 48 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 49 H 0.01 0.52 7.68 -2.39 -0.02 0.51 16 50 H 0.38 20.41 7.67 -92.71 -0.71 19.70 16 51 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -74.00 388.87 -1.93 -75.93 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: 0.19 Total: 25.50 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 6.15 Total: -0.42 kcal Atomic # 7 Polarization: -118.97 SS G_CDS: -10.25 Total: -129.23 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.05 Total: -20.85 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -74.00 -1.93 -75.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104914159.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.353 kcal (2) G-P(sol) polarization free energy of solvation -73.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds