Wall clock time and date at job start Fri Apr 10 2020 18:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 110.30658 * 2 1 4 4 C 1.54386 * 110.43122 * 237.76609 * 2 1 3 5 5 N 1.48155 * 104.61749 * 264.94748 * 4 2 1 6 6 C 1.34775 * 127.83319 * 140.43647 * 5 4 2 7 7 O 1.21283 * 119.99626 * 180.02562 * 6 5 4 8 8 C 1.50689 * 120.00452 * 0.02562 * 6 5 4 9 9 H 1.09008 * 109.58008 * 300.00443 * 8 6 5 10 10 C 1.53149 * 109.58078 * 60.26457 * 8 6 5 11 11 N 1.46905 * 109.37240 * 119.81143 * 10 8 6 12 12 C 1.46948 * 111.05481 * 298.00178 * 11 10 8 13 13 C 1.53665 * 109.31480 * 62.01644 * 12 11 10 14 14 C 1.53385 * 109.58328 * 179.73762 * 8 6 5 15 15 C 1.53392 * 108.59897 * 181.35785 * 14 8 6 16 16 C 1.46945 * 111.05726 * 61.99363 * 11 10 8 17 17 C 1.48144 * 104.32186 * 320.41624 * 5 4 2 18 18 C 1.54295 * 110.34362 * 122.17556 * 2 1 3 19 19 H 1.09001 * 110.33918 * 0.02562 * 18 2 1 20 20 C 1.52994 * 110.34022 * 237.84865 * 18 2 1 21 21 N 1.46510 * 109.46884 * 175.00171 * 20 18 2 22 22 C 1.36935 * 119.99776 * 180.02562 * 21 20 18 23 23 H 1.07997 * 120.00259 * 359.97438 * 22 21 20 24 24 C 1.38813 * 119.99472 * 179.97438 * 22 21 20 25 25 N 1.31618 * 120.00240 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99684 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46845 * 90.00337 * 26 24 22 28 28 H 1.48503 * 109.47399 * 209.99827 * 26 24 22 29 29 H 1.48498 * 109.47295 * 330.00433 * 26 24 22 30 30 H 1.09003 * 109.47363 * 297.82193 * 1 2 3 31 31 H 1.08995 * 109.47361 * 57.82345 * 1 2 3 32 32 H 1.09001 * 109.47305 * 177.82741 * 1 2 3 33 33 H 1.08994 * 110.41222 * 23.73211 * 4 2 1 34 34 H 1.09001 * 110.40422 * 146.16929 * 4 2 1 35 35 H 1.08996 * 109.48521 * 239.78405 * 10 8 6 36 36 H 1.09005 * 109.48098 * 359.84499 * 10 8 6 37 37 H 1.08998 * 109.48949 * 181.92355 * 12 11 10 38 38 H 1.09006 * 109.48817 * 301.99041 * 12 11 10 39 39 H 1.08999 * 109.50790 * 240.23244 * 13 12 11 40 40 H 1.09006 * 109.82107 * 119.87414 * 13 12 11 41 41 H 1.09003 * 110.10724 * 60.58809 * 14 8 6 42 42 H 1.09003 * 109.46439 * 298.99550 * 15 14 8 43 43 H 1.08997 * 109.68380 * 178.73725 * 15 14 8 44 44 H 1.08998 * 109.49182 * 57.99830 * 16 11 10 45 45 H 1.08998 * 109.49185 * 178.05296 * 16 11 10 46 46 H 1.08995 * 110.40756 * 280.79279 * 17 5 4 47 47 H 1.09001 * 110.40292 * 158.36558 * 17 5 4 48 48 H 1.08995 * 109.47727 * 55.00184 * 20 18 2 49 49 H 1.09001 * 109.47087 * 294.99661 * 20 18 2 50 50 H 0.96998 * 119.99423 * 359.97438 * 21 20 18 51 51 H 0.97000 * 119.99789 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9082 1.0222 0.0000 4 6 2.0689 -0.7717 -1.2238 5 7 2.3177 -2.1430 -0.7212 6 6 2.0838 -3.3102 -1.3531 7 8 2.3431 -4.3598 -0.8036 8 6 1.5001 -3.3111 -2.7424 9 1 0.5270 -2.8201 -2.7301 10 6 2.4395 -2.5647 -3.6943 11 7 2.8787 -3.4760 -4.7594 12 6 3.6341 -4.6089 -4.2068 13 6 2.7248 -5.4161 -3.2672 14 6 1.3407 -4.7559 -3.2321 15 6 0.7778 -4.7296 -4.6588 16 6 1.7373 -3.9445 -5.5576 17 6 2.8824 -1.9400 0.6333 18 6 2.0664 -0.7704 1.2245 19 1 1.2398 -1.1492 1.8257 20 6 2.9670 0.1334 2.0687 21 7 3.3688 -0.5769 3.2855 22 6 4.1817 0.0377 4.2002 23 1 4.5269 1.0458 4.0245 24 6 4.5619 -0.6352 5.3532 25 7 4.1408 -1.8636 5.5676 26 14 5.6713 0.2029 6.6007 27 1 4.8395 0.9267 7.5954 28 1 6.4960 -0.8185 7.2949 29 1 6.5604 1.1668 5.9038 30 1 -0.3634 0.4796 0.9089 31 1 -0.3634 0.5472 -0.8698 32 1 -0.3634 -1.0269 -0.0390 33 1 1.3253 -0.7880 -2.0205 34 1 2.9968 -0.3225 -1.5778 35 1 1.9132 -1.7177 -4.1344 36 1 3.3078 -2.2063 -3.1413 37 1 3.9762 -5.2492 -5.0198 38 1 4.4943 -4.2358 -3.6507 39 1 3.1518 -5.4227 -2.2643 40 1 2.6323 -6.4393 -3.6313 41 1 0.6681 -5.3033 -2.5717 42 1 -0.1985 -4.2448 -4.6552 43 1 0.6783 -5.7485 -5.0330 44 1 1.2163 -3.0877 -5.9848 45 1 2.0949 -4.5899 -6.3598 46 1 3.9373 -1.6734 0.5692 47 1 2.7524 -2.8378 1.2376 48 1 2.4228 1.0382 2.3392 49 1 3.8541 0.4009 1.4944 50 1 3.0584 -1.4822 3.4433 51 1 3.5644 -2.2986 4.9199 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106138892.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:25 Heat of formation + Delta-G solvation = -17.866209 kcal Electronic energy + Delta-G solvation = -28808.406369 eV Core-core repulsion = 25128.381706 eV Total energy + Delta-G solvation = -3680.024663 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.50910 -39.60312 -37.76021 -34.93805 -33.07355 -32.48880 -31.64148 -31.32224 -31.11478 -28.79854 -26.65416 -25.59736 -23.87833 -23.31150 -23.16377 -22.98251 -21.43116 -19.83887 -19.49455 -17.77474 -17.48596 -17.13245 -16.71583 -16.48029 -15.97035 -15.72688 -14.84167 -14.63326 -14.13993 -14.03969 -13.74075 -13.47824 -13.30749 -13.22058 -13.21086 -12.93145 -12.64112 -12.47992 -12.44242 -12.39645 -12.13493 -12.05010 -11.75528 -11.74708 -11.43083 -11.24349 -10.86482 -10.80478 -10.61267 -10.58380 -10.48381 -10.46056 -10.34379 -9.99676 -9.57283 -9.15866 -8.88584 -8.70485 -8.48106 -7.00531 -6.09363 -3.09639 2.60721 2.90959 3.52103 3.57268 3.67311 3.71392 4.17286 4.24269 4.50580 4.51421 4.60309 4.70313 4.73858 4.80502 4.86218 4.88236 4.90109 5.00100 5.07457 5.16025 5.24260 5.30844 5.35473 5.41143 5.46082 5.47949 5.55347 5.59982 5.63237 5.65729 5.70122 5.72557 5.83902 5.87666 5.91484 5.93833 5.96766 6.01978 6.09491 6.13010 6.23330 6.26032 6.44054 6.62268 6.74478 6.74830 6.76788 7.58798 7.81083 8.17097 8.76699 9.23316 10.09733 10.24255 11.39146 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.021312 B = 0.002858 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.478764 B = 9796.235274 C =10411.224797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.101 4.101 3 H 0.089 0.911 4 C 0.104 3.896 5 N -0.620 5.620 6 C 0.538 3.462 7 O -0.536 6.536 8 C -0.135 4.135 9 H 0.096 0.904 10 C 0.063 3.937 11 N -0.527 5.527 12 C 0.051 3.949 13 C -0.161 4.161 14 C -0.065 4.065 15 C -0.150 4.150 16 C 0.052 3.948 17 C 0.115 3.885 18 C -0.104 4.104 19 H 0.080 0.920 20 C 0.169 3.831 21 N -0.744 5.744 22 C -0.333 4.333 23 H 0.065 0.935 24 C -0.045 4.045 25 N -0.943 5.943 26 Si 1.083 2.917 27 H -0.295 1.295 28 H -0.288 1.288 29 H -0.295 1.295 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.095 0.905 40 H 0.062 0.938 41 H 0.083 0.917 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.081 0.919 48 H 0.023 0.977 49 H 0.022 0.978 50 H 0.367 0.633 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.365 -0.836 -24.977 26.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 H 0.108 0.892 4 C -0.019 4.019 5 N -0.354 5.354 6 C 0.327 3.673 7 O -0.413 6.413 8 C -0.158 4.158 9 H 0.114 0.886 10 C -0.066 4.066 11 N -0.247 5.247 12 C -0.077 4.077 13 C -0.200 4.200 14 C -0.085 4.085 15 C -0.190 4.190 16 C -0.077 4.077 17 C -0.007 4.007 18 C -0.124 4.124 19 H 0.099 0.901 20 C 0.041 3.959 21 N -0.390 5.390 22 C -0.464 4.464 23 H 0.083 0.917 24 C -0.243 4.243 25 N -0.589 5.589 26 Si 0.914 3.086 27 H -0.223 1.223 28 H -0.214 1.214 29 H -0.222 1.222 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.113 0.887 40 H 0.081 0.919 41 H 0.101 0.899 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.094 0.906 47 H 0.099 0.901 48 H 0.041 0.959 49 H 0.040 0.960 50 H 0.200 0.800 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.025 -1.183 -23.663 24.712 hybrid contribution -1.567 -0.396 -0.776 1.793 sum -8.592 -1.579 -24.438 25.953 Atomic orbital electron populations 1.21825 0.94453 1.01650 1.01877 1.22115 0.96180 0.99777 0.94026 0.89224 1.22538 1.00554 0.81950 0.96850 1.49056 1.63026 1.05346 1.17980 1.20108 0.78098 0.82119 0.87013 1.90658 1.52824 1.30324 1.67489 1.22052 1.01289 0.99327 0.93088 0.88577 1.22271 0.98035 0.95070 0.91193 1.62535 1.22786 1.17102 1.22306 1.22333 0.96263 0.91625 0.97484 1.22565 0.95448 0.99005 1.02968 1.20900 0.97991 0.93695 0.95919 1.22304 0.99573 1.01559 0.95526 1.22224 0.90714 0.99031 0.95713 1.22420 0.97464 0.98961 0.81825 1.22407 0.98783 0.95570 0.95650 0.90146 1.20655 0.94395 0.93333 0.87482 1.42392 1.60176 1.15813 1.20630 1.20037 1.25383 0.99437 1.01570 0.91737 1.25786 1.02686 0.97179 0.98637 1.70846 1.36989 1.12792 1.38229 0.83195 0.75592 0.74449 0.75373 1.22329 1.21373 1.22154 0.92061 0.92710 0.92905 0.90506 0.90789 0.89806 0.90031 0.90675 0.90755 0.88651 0.91908 0.89862 0.91637 0.91232 0.90608 0.90540 0.90563 0.90088 0.95918 0.96022 0.79996 0.93331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 8.91 37.15 0.33 -1.09 16 2 C -0.10 -1.15 3.30 -89.22 -0.29 -1.45 16 3 H 0.09 0.96 7.71 -51.93 -0.40 0.56 16 4 C 0.10 1.06 5.29 -2.40 -0.01 1.04 16 5 N -0.62 -8.30 3.21 -169.31 -0.54 -8.84 16 6 C 0.54 7.56 6.71 -10.99 -0.07 7.48 16 7 O -0.54 -9.60 14.00 5.56 0.08 -9.52 16 8 C -0.13 -1.38 1.91 -91.50 -0.18 -1.55 16 9 H 0.10 0.86 7.95 -51.92 -0.41 0.44 16 10 C 0.06 0.58 4.47 -3.74 -0.02 0.56 16 11 N -0.53 -4.89 5.22 -233.93 -1.22 -6.11 16 12 C 0.05 0.51 6.12 -3.45 -0.02 0.49 16 13 C -0.16 -1.78 5.45 -26.18 -0.14 -1.93 16 14 C -0.07 -0.67 2.60 -90.01 -0.23 -0.91 16 15 C -0.15 -1.16 5.74 -26.46 -0.15 -1.31 16 16 C 0.05 0.38 6.09 -3.73 -0.02 0.36 16 17 C 0.12 1.87 6.41 -2.41 -0.02 1.86 16 18 C -0.10 -1.62 2.75 -89.22 -0.24 -1.86 16 19 H 0.08 1.35 7.71 -51.93 -0.40 0.95 16 20 C 0.17 3.29 5.38 -4.04 -0.02 3.27 16 21 N -0.74 -18.73 5.48 -59.91 -0.33 -19.06 16 22 C -0.33 -9.47 9.99 -15.06 -0.15 -9.62 16 23 H 0.06 1.80 7.83 -52.49 -0.41 1.39 16 24 C -0.05 -1.33 5.50 -17.43 -0.10 -1.43 16 25 N -0.94 -29.66 13.70 55.49 0.76 -28.90 16 26 Si 1.08 26.24 29.92 -169.99 -5.09 21.16 16 27 H -0.30 -6.95 7.11 56.52 0.40 -6.54 16 28 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 29 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.60 6.63 -51.93 -0.34 0.26 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.61 8.12 -51.93 -0.42 0.19 16 36 H 0.08 0.84 7.02 -51.93 -0.36 0.48 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.10 1.36 5.57 -51.93 -0.29 1.07 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.96 8.12 -51.93 -0.42 0.54 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.08 1.32 7.75 -51.93 -0.40 0.92 16 47 H 0.08 1.52 7.88 -51.93 -0.41 1.11 16 48 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.02 0.43 7.98 -51.93 -0.41 0.01 16 50 H 0.37 9.55 6.44 -40.82 -0.26 9.29 16 51 H 0.26 7.94 6.77 -40.82 -0.28 7.66 16 LS Contribution 380.67 15.07 5.74 5.74 Total: -1.00 -33.42 380.67 -11.05 -44.46 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -9.10 Total: 7.16 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -1.34 Total: -6.08 kcal Atomic # 7 Polarization: -61.58 SS G_CDS: -1.33 Total: -62.91 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.08 Total: -9.52 kcal Atomic # 14 Polarization: 26.24 SS G_CDS: -5.09 Total: 21.16 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.42 -11.05 -44.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106138892.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.596 kcal (2) G-P(sol) polarization free energy of solvation -33.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds