Wall clock time and date at job start Fri Apr 10 2020 18:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 110.30658 * 2 1 4 4 C 1.54386 * 110.43122 * 237.76609 * 2 1 3 5 5 N 1.48155 * 104.61749 * 264.94748 * 4 2 1 6 6 C 1.34775 * 127.83319 * 140.43647 * 5 4 2 7 7 O 1.21283 * 119.99626 * 180.02562 * 6 5 4 8 8 C 1.50689 * 120.00452 * 0.02562 * 6 5 4 9 9 H 1.09008 * 109.58008 * 300.00443 * 8 6 5 10 10 C 1.53149 * 109.58078 * 60.26457 * 8 6 5 11 11 N 1.46905 * 109.37240 * 119.81143 * 10 8 6 12 12 C 1.46948 * 111.05481 * 298.00178 * 11 10 8 13 13 C 1.53665 * 109.31480 * 62.01644 * 12 11 10 14 14 C 1.53385 * 109.58328 * 179.73762 * 8 6 5 15 15 C 1.53392 * 108.59897 * 181.35785 * 14 8 6 16 16 C 1.46945 * 111.05726 * 61.99363 * 11 10 8 17 17 C 1.48144 * 104.32186 * 320.41624 * 5 4 2 18 18 C 1.54295 * 110.34362 * 122.17556 * 2 1 3 19 19 H 1.09001 * 110.33918 * 0.02562 * 18 2 1 20 20 C 1.52994 * 110.34022 * 237.84865 * 18 2 1 21 21 N 1.46510 * 109.46884 * 175.00171 * 20 18 2 22 22 C 1.36935 * 119.99776 * 180.02562 * 21 20 18 23 23 H 1.07997 * 120.00259 * 359.97438 * 22 21 20 24 24 C 1.38813 * 119.99472 * 179.97438 * 22 21 20 25 25 N 1.31618 * 120.00240 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99684 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46845 * 90.00337 * 26 24 22 28 28 H 1.48503 * 109.47399 * 209.99827 * 26 24 22 29 29 H 1.48498 * 109.47295 * 330.00433 * 26 24 22 30 30 H 1.09003 * 109.47363 * 297.82193 * 1 2 3 31 31 H 1.08995 * 109.47361 * 57.82345 * 1 2 3 32 32 H 1.09001 * 109.47305 * 177.82741 * 1 2 3 33 33 H 1.08994 * 110.41222 * 23.73211 * 4 2 1 34 34 H 1.09001 * 110.40422 * 146.16929 * 4 2 1 35 35 H 1.08996 * 109.48521 * 239.78405 * 10 8 6 36 36 H 1.09005 * 109.48098 * 359.84499 * 10 8 6 37 37 H 1.08998 * 109.48949 * 181.92355 * 12 11 10 38 38 H 1.09006 * 109.48817 * 301.99041 * 12 11 10 39 39 H 1.08999 * 109.50790 * 240.23244 * 13 12 11 40 40 H 1.09006 * 109.82107 * 119.87414 * 13 12 11 41 41 H 1.09003 * 110.10724 * 60.58809 * 14 8 6 42 42 H 1.09003 * 109.46439 * 298.99550 * 15 14 8 43 43 H 1.08997 * 109.68380 * 178.73725 * 15 14 8 44 44 H 1.08998 * 109.49182 * 57.99830 * 16 11 10 45 45 H 1.08998 * 109.49185 * 178.05296 * 16 11 10 46 46 H 1.08995 * 110.40756 * 280.79279 * 17 5 4 47 47 H 1.09001 * 110.40292 * 158.36558 * 17 5 4 48 48 H 1.08995 * 109.47727 * 55.00184 * 20 18 2 49 49 H 1.09001 * 109.47087 * 294.99661 * 20 18 2 50 50 H 0.96998 * 119.99423 * 359.97438 * 21 20 18 51 51 H 0.97000 * 119.99789 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9082 1.0222 0.0000 4 6 2.0689 -0.7717 -1.2238 5 7 2.3177 -2.1430 -0.7212 6 6 2.0838 -3.3102 -1.3531 7 8 2.3431 -4.3598 -0.8036 8 6 1.5001 -3.3111 -2.7424 9 1 0.5270 -2.8201 -2.7301 10 6 2.4395 -2.5647 -3.6943 11 7 2.8787 -3.4760 -4.7594 12 6 3.6341 -4.6089 -4.2068 13 6 2.7248 -5.4161 -3.2672 14 6 1.3407 -4.7559 -3.2321 15 6 0.7778 -4.7296 -4.6588 16 6 1.7373 -3.9445 -5.5576 17 6 2.8824 -1.9400 0.6333 18 6 2.0664 -0.7704 1.2245 19 1 1.2398 -1.1492 1.8257 20 6 2.9670 0.1334 2.0687 21 7 3.3688 -0.5769 3.2855 22 6 4.1817 0.0377 4.2002 23 1 4.5269 1.0458 4.0245 24 6 4.5619 -0.6352 5.3532 25 7 4.1408 -1.8636 5.5676 26 14 5.6713 0.2029 6.6007 27 1 4.8395 0.9267 7.5954 28 1 6.4960 -0.8185 7.2949 29 1 6.5604 1.1668 5.9038 30 1 -0.3634 0.4796 0.9089 31 1 -0.3634 0.5472 -0.8698 32 1 -0.3634 -1.0269 -0.0390 33 1 1.3253 -0.7880 -2.0205 34 1 2.9968 -0.3225 -1.5778 35 1 1.9132 -1.7177 -4.1344 36 1 3.3078 -2.2063 -3.1413 37 1 3.9762 -5.2492 -5.0198 38 1 4.4943 -4.2358 -3.6507 39 1 3.1518 -5.4227 -2.2643 40 1 2.6323 -6.4393 -3.6313 41 1 0.6681 -5.3033 -2.5717 42 1 -0.1985 -4.2448 -4.6552 43 1 0.6783 -5.7485 -5.0330 44 1 1.2163 -3.0877 -5.9848 45 1 2.0949 -4.5899 -6.3598 46 1 3.9373 -1.6734 0.5692 47 1 2.7524 -2.8378 1.2376 48 1 2.4228 1.0382 2.3392 49 1 3.8541 0.4009 1.4944 50 1 3.0584 -1.4822 3.4433 51 1 3.5644 -2.2986 4.9199 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106138892.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:24 Heat of formation + Delta-G solvation = -40.961629 kcal Electronic energy + Delta-G solvation = -28809.407861 eV Core-core repulsion = 25128.381706 eV Total energy + Delta-G solvation = -3681.026156 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.37831 -40.64832 -38.93936 -36.79689 -34.39998 -33.26331 -33.02080 -32.41933 -31.84115 -30.34673 -27.54435 -27.09492 -25.41066 -24.42885 -24.01938 -23.85702 -22.74655 -21.04771 -20.54335 -19.32340 -18.56441 -18.31917 -17.61229 -17.36025 -17.10257 -16.79233 -16.20015 -16.01092 -15.76057 -15.29896 -15.12943 -14.98923 -14.39285 -14.14767 -13.96155 -13.93923 -13.78289 -13.39086 -13.18917 -13.16792 -13.09285 -13.01937 -12.87967 -12.83874 -12.58193 -12.55530 -12.41602 -12.03944 -11.97287 -11.85418 -11.77000 -11.62905 -11.40191 -11.20589 -11.13692 -10.96576 -10.62899 -9.82842 -9.24473 -9.14765 -8.43129 -5.37220 1.51981 1.56266 1.67742 1.81625 1.83335 2.69548 2.97795 3.24824 3.37616 3.45224 3.50579 3.59343 3.72070 3.77769 3.93142 3.99042 4.04974 4.16254 4.18414 4.24440 4.25617 4.28258 4.34107 4.42093 4.43496 4.47708 4.57141 4.60926 4.69072 4.75460 4.78341 4.83369 4.93228 4.94989 4.98424 4.98701 5.04166 5.11676 5.14628 5.15503 5.17632 5.20169 5.24577 5.36886 5.46502 5.56215 6.02124 6.11691 6.44548 6.52424 7.05299 7.07041 7.95462 8.07479 9.08614 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.021312 B = 0.002858 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.478764 B = 9796.235274 C =10411.224797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.093 4.093 3 H 0.106 0.894 4 C 0.105 3.895 5 N -0.618 5.618 6 C 0.529 3.471 7 O -0.586 6.586 8 C -0.123 4.123 9 H 0.122 0.878 10 C 0.066 3.934 11 N -0.530 5.530 12 C 0.056 3.944 13 C -0.160 4.160 14 C -0.070 4.070 15 C -0.141 4.141 16 C 0.051 3.949 17 C 0.120 3.880 18 C -0.093 4.093 19 H 0.063 0.937 20 C 0.169 3.831 21 N -0.760 5.760 22 C -0.333 4.333 23 H 0.071 0.929 24 C -0.109 4.109 25 N -0.977 5.977 26 Si 1.132 2.868 27 H -0.283 1.283 28 H -0.295 1.295 29 H -0.270 1.270 30 H 0.051 0.949 31 H 0.088 0.912 32 H 0.042 0.958 33 H 0.114 0.886 34 H 0.089 0.911 35 H 0.118 0.882 36 H 0.066 0.934 37 H 0.089 0.911 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.097 0.903 45 H 0.084 0.916 46 H 0.061 0.939 47 H 0.041 0.959 48 H 0.029 0.971 49 H 0.027 0.973 50 H 0.357 0.643 51 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.550 1.770 -28.285 29.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.113 4.113 3 H 0.124 0.876 4 C -0.016 4.016 5 N -0.351 5.351 6 C 0.319 3.681 7 O -0.467 6.467 8 C -0.146 4.146 9 H 0.140 0.860 10 C -0.063 4.063 11 N -0.250 5.250 12 C -0.073 4.073 13 C -0.199 4.199 14 C -0.090 4.090 15 C -0.180 4.180 16 C -0.076 4.076 17 C -0.003 4.003 18 C -0.113 4.113 19 H 0.081 0.919 20 C 0.043 3.957 21 N -0.405 5.405 22 C -0.464 4.464 23 H 0.089 0.911 24 C -0.299 4.299 25 N -0.625 5.625 26 Si 0.956 3.044 27 H -0.209 1.209 28 H -0.222 1.222 29 H -0.195 1.195 30 H 0.070 0.930 31 H 0.107 0.893 32 H 0.061 0.939 33 H 0.132 0.868 34 H 0.107 0.893 35 H 0.136 0.864 36 H 0.084 0.916 37 H 0.107 0.893 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.101 0.899 43 H 0.092 0.908 44 H 0.115 0.885 45 H 0.103 0.897 46 H 0.079 0.921 47 H 0.059 0.941 48 H 0.047 0.953 49 H 0.045 0.955 50 H 0.188 0.812 51 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -8.239 1.485 -27.040 28.306 hybrid contribution -1.191 -1.229 0.226 1.727 sum -9.430 0.256 -26.814 28.425 Atomic orbital electron populations 1.21804 0.93027 1.01505 1.03036 1.22137 0.97273 0.99973 0.91876 0.87577 1.22808 1.02400 0.79396 0.97042 1.49120 1.62365 1.06949 1.16631 1.21020 0.77346 0.81354 0.88332 1.90649 1.54843 1.32263 1.68940 1.22104 1.02398 0.99845 0.90241 0.85981 1.22351 0.97402 0.95733 0.90818 1.62562 1.23709 1.16620 1.22124 1.22255 0.95586 0.92064 0.97386 1.22493 0.96446 0.99932 1.01057 1.20913 0.96972 0.93456 0.97633 1.22256 1.00248 1.02335 0.93147 1.22354 0.89941 0.99994 0.95352 1.22101 0.97087 0.97601 0.83556 1.22231 0.97229 0.95072 0.96788 0.91879 1.20833 0.95172 0.93750 0.85963 1.42675 1.59965 1.15730 1.22096 1.20440 1.24595 0.99558 1.01822 0.91106 1.27307 1.04228 0.97148 1.01244 1.70971 1.38701 1.14337 1.38535 0.82580 0.74305 0.73899 0.73585 1.20947 1.22194 1.19473 0.93025 0.89270 0.93889 0.86764 0.89302 0.86418 0.91563 0.89253 0.92573 0.92663 0.91416 0.91951 0.89913 0.90784 0.88460 0.89727 0.92084 0.94073 0.95272 0.95539 0.81151 0.94843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.91 71.98 0.64 -1.70 16 2 C -0.09 -1.88 3.30 -9.89 -0.03 -1.92 16 3 H 0.11 1.88 7.71 -2.39 -0.02 1.86 16 4 C 0.10 1.81 5.29 86.53 0.46 2.26 16 5 N -0.62 -16.48 3.21 -807.97 -2.59 -19.08 16 6 C 0.53 15.13 6.71 87.65 0.59 15.72 16 7 O -0.59 -22.73 14.00 -3.04 -0.04 -22.77 16 8 C -0.12 -2.28 1.91 -11.36 -0.02 -2.31 16 9 H 0.12 1.67 7.95 -2.38 -0.02 1.65 16 10 C 0.07 0.99 4.47 86.35 0.39 1.38 16 11 N -0.53 -8.35 5.22 -894.03 -4.67 -13.02 16 12 C 0.06 1.07 6.12 86.52 0.53 1.60 16 13 C -0.16 -3.66 5.45 30.95 0.17 -3.49 16 14 C -0.07 -1.38 2.60 -10.40 -0.03 -1.41 16 15 C -0.14 -1.72 5.74 30.77 0.18 -1.54 16 16 C 0.05 0.56 6.09 86.34 0.53 1.09 16 17 C 0.12 4.14 6.41 86.53 0.55 4.69 16 18 C -0.09 -2.93 2.75 -9.89 -0.03 -2.96 16 19 H 0.06 2.21 7.71 -2.39 -0.02 2.19 16 20 C 0.17 6.61 5.38 86.38 0.46 7.08 16 21 N -0.76 -39.50 5.48 -343.45 -1.88 -41.38 16 22 C -0.33 -19.15 9.99 84.03 0.84 -18.31 16 23 H 0.07 3.92 7.83 -2.91 -0.02 3.89 16 24 C -0.11 -6.49 5.50 84.86 0.47 -6.03 16 25 N -0.98 -63.65 13.70 21.65 0.30 -63.36 16 26 Si 1.13 53.11 29.92 68.60 2.05 55.16 16 27 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 28 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 29 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 30 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.11 1.18 6.63 -2.39 -0.02 1.16 16 34 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.12 1.03 8.12 -2.39 -0.02 1.01 16 36 H 0.07 1.23 7.02 -2.38 -0.02 1.21 16 37 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 39 H 0.05 1.73 5.57 -2.39 -0.01 1.71 16 40 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 41 H 0.06 1.47 8.12 -2.39 -0.02 1.45 16 42 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.10 0.71 8.14 -2.39 -0.02 0.70 16 45 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.06 2.25 7.75 -2.39 -0.02 2.24 16 47 H 0.04 1.72 7.88 -2.39 -0.02 1.70 16 48 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.03 1.03 7.98 -2.39 -0.02 1.01 16 50 H 0.36 19.73 6.44 -92.71 -0.60 19.13 16 51 H 0.24 15.84 6.77 -92.71 -0.63 15.21 16 Total: -1.00 -77.85 380.67 -0.70 -78.55 By element: Atomic # 1 Polarization: 31.29 SS G_CDS: 0.44 Total: 31.73 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: 5.69 Total: -5.84 kcal Atomic # 7 Polarization: -127.99 SS G_CDS: -8.84 Total: -136.83 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.04 Total: -22.77 kcal Atomic # 14 Polarization: 53.11 SS G_CDS: 2.05 Total: 55.16 kcal Total: -77.85 -0.70 -78.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106138892.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.584 kcal (2) G-P(sol) polarization free energy of solvation -77.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds