Wall clock time and date at job start Fri Apr 10 2020 18:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47451 * 110.99954 * 2 1 4 4 C 1.54319 * 107.23335 * 123.25131 * 3 2 1 5 5 C 1.55434 * 103.04617 * 22.28835 * 4 3 2 6 6 H 1.08996 * 110.99905 * 82.38610 * 5 4 3 7 7 C 1.50700 * 111.10174 * 206.29201 * 5 4 3 8 8 O 1.21283 * 119.99827 * 18.64164 * 7 5 4 9 9 N 1.34778 * 119.99957 * 198.63345 * 7 5 4 10 10 C 1.48114 * 127.84251 * 4.69759 * 9 7 5 11 11 C 1.54329 * 104.69266 * 219.72365 * 10 9 7 12 12 H 1.08997 * 111.85174 * 213.63417 * 11 10 9 13 13 C 1.54162 * 108.86383 * 89.55754 * 11 10 9 14 14 C 1.54840 * 104.32572 * 271.22551 * 13 11 10 15 15 C 1.54843 * 102.74144 * 321.81807 * 14 13 11 16 16 C 1.54157 * 104.32198 * 38.19024 * 15 14 13 17 17 C 1.53001 * 111.82444 * 213.79012 * 16 15 14 18 18 N 1.46497 * 109.47224 * 299.26236 * 17 16 15 19 19 C 1.36929 * 120.00179 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00385 * 359.97438 * 19 18 17 21 21 C 1.38818 * 119.99964 * 179.97438 * 19 18 17 22 22 N 1.31613 * 120.00106 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99789 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47149 * 60.00156 * 23 21 19 25 25 H 1.48500 * 109.47002 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47271 * 299.99781 * 23 21 19 27 27 C 1.48119 * 127.84200 * 184.37087 * 9 7 5 28 28 C 1.47846 * 110.99678 * 120.83758 * 2 1 3 29 29 H 1.08999 * 109.47349 * 299.15972 * 1 2 3 30 30 H 1.09000 * 109.47106 * 59.16414 * 1 2 3 31 31 H 1.09005 * 109.46903 * 179.15803 * 1 2 3 32 32 H 1.09000 * 109.88492 * 242.66184 * 3 2 1 33 33 H 1.09006 * 109.88229 * 3.68542 * 3 2 1 34 34 H 1.09000 * 110.69981 * 140.66838 * 4 3 2 35 35 H 1.08999 * 110.70577 * 263.72616 * 4 3 2 36 36 H 1.09000 * 110.39434 * 338.52168 * 10 9 7 37 37 H 1.08998 * 110.39575 * 100.80469 * 10 9 7 38 38 H 1.08990 * 110.46176 * 29.94254 * 13 11 10 39 39 H 1.09003 * 110.45860 * 152.38827 * 13 11 10 40 40 H 1.08996 * 110.75996 * 80.13525 * 14 13 11 41 41 H 1.09008 * 110.75603 * 203.50856 * 14 13 11 42 42 H 1.08999 * 110.46270 * 156.90103 * 15 14 13 43 43 H 1.09002 * 110.45857 * 279.35565 * 15 14 13 44 44 H 1.09004 * 109.47030 * 59.26019 * 17 16 15 45 45 H 1.09001 * 109.47491 * 179.25762 * 17 16 15 46 46 H 0.97010 * 119.99568 * 0.02562 * 18 17 16 47 47 H 0.97002 * 120.00445 * 179.97438 * 22 21 19 48 48 H 1.09004 * 110.38850 * 259.08987 * 27 9 7 49 49 H 1.08999 * 110.39424 * 21.48085 * 27 9 7 50 50 H 1.08992 * 110.37786 * 332.46780 * 28 2 1 51 51 H 1.08998 * 110.37197 * 94.70193 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3766 0.0000 4 6 2.9157 1.5138 1.2326 5 6 3.3058 0.0420 1.5451 6 1 4.1309 -0.2860 0.9129 7 6 3.6438 -0.1318 3.0034 8 8 3.2767 0.6929 3.8134 9 7 4.3537 -1.2038 3.4075 10 6 4.9663 -2.2576 2.5662 11 6 4.7216 -3.5692 3.3418 12 1 5.5393 -4.2777 3.2090 13 6 3.3700 -4.1647 2.9001 14 6 2.3362 -3.5177 3.8541 15 6 3.0940 -3.4798 5.2039 16 6 4.5448 -3.1304 4.8171 17 6 5.5588 -3.8090 5.7403 18 7 5.3442 -3.3574 7.1173 19 6 6.1385 -3.8338 8.1258 20 1 6.9230 -4.5428 7.9062 21 6 5.9354 -3.4054 9.4305 22 7 4.9790 -2.5418 9.6983 23 14 7.0196 -4.0548 10.8061 24 1 8.4352 -3.7023 10.5290 25 1 6.6016 -3.4466 12.0947 26 1 6.8840 -5.5313 10.8881 27 6 4.7040 -1.5918 4.7934 28 6 1.9988 -0.7075 1.1852 29 1 -0.3634 0.5007 0.8974 30 1 -0.3633 0.5268 -0.8824 31 1 -0.3633 -1.0276 -0.0151 32 1 2.5697 1.5540 -0.9105 33 1 1.1752 2.0893 0.0659 34 1 3.7999 2.1035 0.9906 35 1 2.3750 1.9576 2.0685 36 1 4.4797 -2.2964 1.5916 37 1 6.0349 -2.0771 2.4494 38 1 3.1549 -3.8958 1.8660 39 1 3.3743 -5.2483 3.0181 40 1 2.0839 -2.5099 3.5243 41 1 1.4415 -4.1356 3.9307 42 1 2.6770 -2.7104 5.8536 43 1 3.0517 -4.4536 5.6920 44 1 5.4307 -4.8902 5.6884 45 1 6.5690 -3.5473 5.4253 46 1 4.6387 -2.7214 7.3147 47 1 4.8369 -2.2427 10.6100 48 1 5.7329 -1.3107 5.0179 49 1 4.0190 -1.1272 5.5026 50 1 1.2889 -0.6501 2.0102 51 1 2.2129 -1.7481 0.9415 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112578382.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:09 Heat of formation + Delta-G solvation = -17.920019 kcal Electronic energy + Delta-G solvation = -29026.302546 eV Core-core repulsion = 25346.275550 eV Total energy + Delta-G solvation = -3680.026996 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.86692 -39.47881 -37.82194 -34.77898 -34.09542 -32.46190 -31.65751 -29.96689 -29.82190 -28.78572 -26.40455 -25.41500 -25.37460 -23.81933 -22.20563 -21.85923 -21.17994 -20.15337 -19.12198 -18.58362 -17.44177 -16.89446 -16.33520 -16.06324 -15.79790 -14.76910 -14.65581 -14.44973 -14.27983 -14.12584 -13.74907 -13.62447 -13.45611 -13.27333 -13.15710 -12.99808 -12.82133 -12.57528 -12.16876 -11.92877 -11.79495 -11.63052 -11.57591 -11.36574 -11.16314 -10.97061 -10.83979 -10.77288 -10.71501 -10.56761 -10.53260 -10.35101 -10.25691 -9.97169 -9.74480 -9.63206 -8.86178 -8.67710 -8.51921 -6.90657 -5.74175 -3.03180 2.61134 2.96070 3.45129 3.49484 3.50754 3.70752 4.24379 4.38612 4.40387 4.50706 4.60916 4.68998 4.75921 4.95017 4.96113 5.03157 5.14562 5.17575 5.26184 5.30345 5.31957 5.38689 5.42136 5.53458 5.56208 5.57964 5.59067 5.61606 5.66357 5.74204 5.78242 5.83524 5.91631 5.94445 6.00013 6.06556 6.17892 6.21497 6.27682 6.34365 6.52716 6.53743 6.56164 6.64537 6.67846 6.76077 6.80622 7.66260 7.70702 8.21866 8.44115 9.55493 10.13081 10.47709 11.48367 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.022395 B = 0.003082 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.989367 B = 9083.260924 C = 9528.003328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.532 5.532 3 C 0.041 3.959 4 C -0.126 4.126 5 C -0.116 4.116 6 H 0.103 0.897 7 C 0.541 3.459 8 O -0.539 6.539 9 N -0.615 5.615 10 C 0.104 3.896 11 C -0.099 4.099 12 H 0.095 0.905 13 C -0.114 4.114 14 C -0.123 4.123 15 C -0.104 4.104 16 C -0.072 4.072 17 C 0.174 3.826 18 N -0.730 5.730 19 C -0.241 4.241 20 H 0.069 0.931 21 C -0.012 4.012 22 N -0.932 5.932 23 Si 0.906 3.094 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.122 3.878 28 C 0.059 3.941 29 H 0.029 0.971 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.024 0.976 45 H 0.020 0.980 46 H 0.385 0.615 47 H 0.256 0.744 48 H 0.075 0.925 49 H 0.084 0.916 50 H 0.053 0.947 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.206 2.272 -23.273 24.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.256 5.256 3 C -0.087 4.087 4 C -0.165 4.165 5 C -0.138 4.138 6 H 0.121 0.879 7 C 0.329 3.671 8 O -0.416 6.416 9 N -0.348 5.348 10 C -0.019 4.019 11 C -0.118 4.118 12 H 0.113 0.887 13 C -0.151 4.151 14 C -0.160 4.160 15 C -0.142 4.142 16 C -0.073 4.073 17 C 0.046 3.954 18 N -0.374 5.374 19 C -0.372 4.372 20 H 0.087 0.913 21 C -0.208 4.208 22 N -0.580 5.580 23 Si 0.737 3.263 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C 0.000 4.000 28 C -0.069 4.069 29 H 0.048 0.952 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.042 0.958 45 H 0.038 0.962 46 H 0.219 0.781 47 H 0.065 0.935 48 H 0.093 0.907 49 H 0.103 0.897 50 H 0.072 0.928 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.206 2.488 -23.231 24.174 hybrid contribution 0.189 0.217 1.647 1.672 sum -6.016 2.704 -21.584 22.569 Atomic orbital electron populations 1.22564 0.87373 1.02315 1.00772 1.63630 1.08257 1.14352 1.39400 1.22877 0.98072 0.89356 0.98391 1.22772 1.00441 0.94761 0.98521 1.22444 0.99623 0.98053 0.93655 0.87914 1.19834 0.77324 0.79939 0.90012 1.90721 1.53731 1.41848 1.55306 1.48972 1.52323 1.24102 1.09445 1.22547 0.98035 0.86879 0.94407 1.22703 0.98584 0.95909 0.94645 0.88705 1.22388 0.94140 1.00047 0.98539 1.22480 0.97540 1.00066 0.95954 1.22329 0.93125 1.02457 0.96258 1.22301 0.96973 0.94151 0.93911 1.20582 0.94054 0.95628 0.85164 1.42327 1.40560 1.53539 1.01018 1.19156 1.10482 1.20407 0.87178 0.91290 1.24732 0.98982 0.99772 0.97359 1.69646 1.33592 1.35381 1.19381 0.86284 0.79971 0.78198 0.81803 1.21322 1.21739 1.21323 1.22509 1.01377 0.93762 0.82383 1.22942 0.93903 0.98481 0.91565 0.95201 0.91214 0.91221 0.90220 0.92322 0.90292 0.89600 0.90382 0.91030 0.92007 0.91424 0.92189 0.92094 0.91510 0.90925 0.95848 0.96228 0.78123 0.93451 0.90713 0.89722 0.92821 0.89493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.12 60.06 0.55 0.69 16 2 N -0.53 -4.93 5.45 -239.51 -1.30 -6.23 16 3 C 0.04 0.35 6.90 -2.83 -0.02 0.33 16 4 C -0.13 -1.28 6.25 -24.75 -0.15 -1.43 16 5 C -0.12 -1.23 2.69 -89.47 -0.24 -1.47 16 6 H 0.10 0.93 7.35 -51.93 -0.38 0.55 16 7 C 0.54 7.82 7.11 -10.99 -0.08 7.74 16 8 O -0.54 -10.10 16.05 5.55 0.09 -10.01 16 9 N -0.62 -8.41 2.52 -169.20 -0.43 -8.84 16 10 C 0.10 1.09 6.21 -2.46 -0.02 1.08 16 11 C -0.10 -1.13 3.60 -88.30 -0.32 -1.45 16 12 H 0.09 1.00 7.91 -51.93 -0.41 0.59 16 13 C -0.11 -1.18 6.27 -25.15 -0.16 -1.34 16 14 C -0.12 -1.53 6.52 -24.79 -0.16 -1.69 16 15 C -0.10 -1.64 5.28 -25.15 -0.13 -1.77 16 16 C -0.07 -1.11 0.67 -151.99 -0.10 -1.21 16 17 C 0.17 3.32 5.16 -4.04 -0.02 3.30 16 18 N -0.73 -18.00 5.25 -59.91 -0.31 -18.31 16 19 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 20 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -28.30 13.06 55.49 0.72 -27.58 16 23 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 C 0.12 2.02 5.64 -2.26 -0.01 2.01 16 28 C 0.06 0.59 6.18 -2.29 -0.01 0.57 16 29 H 0.03 0.25 8.09 -51.93 -0.42 -0.17 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.46 7.58 -51.93 -0.39 0.07 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.09 1.05 7.23 -51.93 -0.38 0.68 16 36 H 0.08 0.65 6.35 -51.93 -0.33 0.32 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.54 7.45 -51.93 -0.39 0.15 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.78 7.66 -51.93 -0.40 0.39 16 41 H 0.06 0.71 8.14 -51.92 -0.42 0.28 16 42 H 0.07 1.19 7.47 -51.93 -0.39 0.80 16 43 H 0.07 1.22 7.96 -51.93 -0.41 0.81 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.38 10.10 7.11 -40.82 -0.29 9.81 16 47 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 48 H 0.07 1.33 7.99 -51.93 -0.41 0.91 16 49 H 0.08 1.65 7.24 -51.93 -0.38 1.27 16 50 H 0.05 0.61 7.66 -51.93 -0.40 0.22 16 51 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 388.89 15.07 5.86 5.86 Total: -1.00 -32.14 388.89 -10.67 -42.81 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -9.15 Total: 6.77 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -1.13 Total: -1.91 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: -1.32 Total: -60.96 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.14 -10.67 -42.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112578382.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.894 kcal (2) G-P(sol) polarization free energy of solvation -32.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds