Wall clock time and date at job start Fri Apr 10 2020 18:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47451 * 110.99954 * 2 1 4 4 C 1.54319 * 107.23335 * 123.25131 * 3 2 1 5 5 C 1.55434 * 103.04617 * 22.28835 * 4 3 2 6 6 H 1.08996 * 110.99905 * 82.38610 * 5 4 3 7 7 C 1.50700 * 111.10174 * 206.29201 * 5 4 3 8 8 O 1.21283 * 119.99827 * 18.64164 * 7 5 4 9 9 N 1.34778 * 119.99957 * 198.63345 * 7 5 4 10 10 C 1.48114 * 127.84251 * 4.69759 * 9 7 5 11 11 C 1.54329 * 104.69266 * 219.72365 * 10 9 7 12 12 H 1.08997 * 111.85174 * 213.63417 * 11 10 9 13 13 C 1.54162 * 108.86383 * 89.55754 * 11 10 9 14 14 C 1.54840 * 104.32572 * 271.22551 * 13 11 10 15 15 C 1.54843 * 102.74144 * 321.81807 * 14 13 11 16 16 C 1.54157 * 104.32198 * 38.19024 * 15 14 13 17 17 C 1.53001 * 111.82444 * 213.79012 * 16 15 14 18 18 N 1.46497 * 109.47224 * 299.26236 * 17 16 15 19 19 C 1.36929 * 120.00179 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00385 * 359.97438 * 19 18 17 21 21 C 1.38818 * 119.99964 * 179.97438 * 19 18 17 22 22 N 1.31613 * 120.00106 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99789 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47149 * 60.00156 * 23 21 19 25 25 H 1.48500 * 109.47002 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47271 * 299.99781 * 23 21 19 27 27 C 1.48119 * 127.84200 * 184.37087 * 9 7 5 28 28 C 1.47846 * 110.99678 * 120.83758 * 2 1 3 29 29 H 1.08999 * 109.47349 * 299.15972 * 1 2 3 30 30 H 1.09000 * 109.47106 * 59.16414 * 1 2 3 31 31 H 1.09005 * 109.46903 * 179.15803 * 1 2 3 32 32 H 1.09000 * 109.88492 * 242.66184 * 3 2 1 33 33 H 1.09006 * 109.88229 * 3.68542 * 3 2 1 34 34 H 1.09000 * 110.69981 * 140.66838 * 4 3 2 35 35 H 1.08999 * 110.70577 * 263.72616 * 4 3 2 36 36 H 1.09000 * 110.39434 * 338.52168 * 10 9 7 37 37 H 1.08998 * 110.39575 * 100.80469 * 10 9 7 38 38 H 1.08990 * 110.46176 * 29.94254 * 13 11 10 39 39 H 1.09003 * 110.45860 * 152.38827 * 13 11 10 40 40 H 1.08996 * 110.75996 * 80.13525 * 14 13 11 41 41 H 1.09008 * 110.75603 * 203.50856 * 14 13 11 42 42 H 1.08999 * 110.46270 * 156.90103 * 15 14 13 43 43 H 1.09002 * 110.45857 * 279.35565 * 15 14 13 44 44 H 1.09004 * 109.47030 * 59.26019 * 17 16 15 45 45 H 1.09001 * 109.47491 * 179.25762 * 17 16 15 46 46 H 0.97010 * 119.99568 * 0.02562 * 18 17 16 47 47 H 0.97002 * 120.00445 * 179.97438 * 22 21 19 48 48 H 1.09004 * 110.38850 * 259.08987 * 27 9 7 49 49 H 1.08999 * 110.39424 * 21.48085 * 27 9 7 50 50 H 1.08992 * 110.37786 * 332.46780 * 28 2 1 51 51 H 1.08998 * 110.37197 * 94.70193 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9974 1.3766 0.0000 4 6 2.9157 1.5138 1.2326 5 6 3.3058 0.0420 1.5451 6 1 4.1309 -0.2860 0.9129 7 6 3.6438 -0.1318 3.0034 8 8 3.2767 0.6929 3.8134 9 7 4.3537 -1.2038 3.4075 10 6 4.9663 -2.2576 2.5662 11 6 4.7216 -3.5692 3.3418 12 1 5.5393 -4.2777 3.2090 13 6 3.3700 -4.1647 2.9001 14 6 2.3362 -3.5177 3.8541 15 6 3.0940 -3.4798 5.2039 16 6 4.5448 -3.1304 4.8171 17 6 5.5588 -3.8090 5.7403 18 7 5.3442 -3.3574 7.1173 19 6 6.1385 -3.8338 8.1258 20 1 6.9230 -4.5428 7.9062 21 6 5.9354 -3.4054 9.4305 22 7 4.9790 -2.5418 9.6983 23 14 7.0196 -4.0548 10.8061 24 1 8.4352 -3.7023 10.5290 25 1 6.6016 -3.4466 12.0947 26 1 6.8840 -5.5313 10.8881 27 6 4.7040 -1.5918 4.7934 28 6 1.9988 -0.7075 1.1852 29 1 -0.3634 0.5007 0.8974 30 1 -0.3633 0.5268 -0.8824 31 1 -0.3633 -1.0276 -0.0151 32 1 2.5697 1.5540 -0.9105 33 1 1.1752 2.0893 0.0659 34 1 3.7999 2.1035 0.9906 35 1 2.3750 1.9576 2.0685 36 1 4.4797 -2.2964 1.5916 37 1 6.0349 -2.0771 2.4494 38 1 3.1549 -3.8958 1.8660 39 1 3.3743 -5.2483 3.0181 40 1 2.0839 -2.5099 3.5243 41 1 1.4415 -4.1356 3.9307 42 1 2.6770 -2.7104 5.8536 43 1 3.0517 -4.4536 5.6920 44 1 5.4307 -4.8902 5.6884 45 1 6.5690 -3.5473 5.4253 46 1 4.6387 -2.7214 7.3147 47 1 4.8369 -2.2427 10.6100 48 1 5.7329 -1.3107 5.0179 49 1 4.0190 -1.1272 5.5026 50 1 1.2889 -0.6501 2.0102 51 1 2.2129 -1.7481 0.9415 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112578382.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:08 Heat of formation + Delta-G solvation = -39.402264 kcal Electronic energy + Delta-G solvation = -29027.234086 eV Core-core repulsion = 25346.275550 eV Total energy + Delta-G solvation = -3680.958536 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.97899 -40.45156 -38.84963 -36.50253 -35.37756 -33.56801 -33.15706 -31.20083 -30.95059 -29.91190 -27.52407 -26.61067 -26.43619 -25.35956 -23.74755 -22.82549 -21.88959 -21.20096 -20.23878 -19.88586 -18.99655 -18.25213 -17.48300 -16.95800 -16.85172 -16.48448 -15.78351 -15.63165 -15.39443 -15.11508 -14.97823 -14.96613 -14.72326 -14.50057 -14.31522 -14.11547 -13.92027 -13.80267 -13.35091 -13.08735 -12.91718 -12.69594 -12.62638 -12.56819 -12.34805 -12.24977 -12.21179 -12.05702 -11.83693 -11.75800 -11.71795 -11.62527 -11.54827 -11.49847 -11.41584 -10.94927 -10.89995 -9.69599 -9.39206 -8.98588 -7.94159 -5.22916 1.45808 1.49082 1.49316 1.55289 1.86585 2.55784 2.96967 3.30730 3.38965 3.44192 3.51046 3.58977 3.64342 3.79416 4.11321 4.19189 4.19629 4.22147 4.22974 4.28007 4.32865 4.41888 4.47535 4.50925 4.53051 4.58455 4.67368 4.70519 4.71815 4.73419 4.83735 4.87691 4.94129 4.96660 4.97428 5.00997 5.04635 5.08301 5.16193 5.21652 5.24873 5.34063 5.36150 5.46534 5.47457 5.50721 5.85373 5.99655 6.26979 6.57155 7.08154 7.33390 8.10951 8.32711 9.29387 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.022395 B = 0.003082 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.989367 B = 9083.260924 C = 9528.003328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.532 5.532 3 C 0.044 3.956 4 C -0.128 4.128 5 C -0.106 4.106 6 H 0.133 0.867 7 C 0.535 3.465 8 O -0.595 6.595 9 N -0.611 5.611 10 C 0.103 3.897 11 C -0.091 4.091 12 H 0.117 0.883 13 C -0.104 4.104 14 C -0.115 4.115 15 C -0.105 4.105 16 C -0.066 4.066 17 C 0.172 3.828 18 N -0.744 5.744 19 C -0.241 4.241 20 H 0.080 0.920 21 C -0.079 4.079 22 N -0.973 5.973 23 Si 0.974 3.026 24 H -0.277 1.277 25 H -0.299 1.299 26 H -0.276 1.276 27 C 0.127 3.873 28 C 0.064 3.936 29 H 0.018 0.982 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.054 0.946 36 H 0.116 0.884 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.052 0.948 41 H 0.071 0.929 42 H 0.027 0.973 43 H 0.058 0.942 44 H 0.031 0.969 45 H 0.026 0.974 46 H 0.371 0.629 47 H 0.249 0.751 48 H 0.058 0.942 49 H 0.039 0.961 50 H 0.030 0.970 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.253 0.406 -27.230 27.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.256 5.256 3 C -0.083 4.083 4 C -0.167 4.167 5 C -0.128 4.128 6 H 0.151 0.849 7 C 0.326 3.674 8 O -0.476 6.476 9 N -0.343 5.343 10 C -0.018 4.018 11 C -0.110 4.110 12 H 0.135 0.865 13 C -0.141 4.141 14 C -0.153 4.153 15 C -0.143 4.143 16 C -0.068 4.068 17 C 0.046 3.954 18 N -0.386 5.386 19 C -0.373 4.373 20 H 0.097 0.903 21 C -0.271 4.271 22 N -0.624 5.624 23 Si 0.803 3.197 24 H -0.203 1.203 25 H -0.226 1.226 26 H -0.202 1.202 27 C 0.004 3.996 28 C -0.065 4.065 29 H 0.036 0.964 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.117 0.883 33 H 0.080 0.920 34 H 0.108 0.892 35 H 0.073 0.927 36 H 0.134 0.866 37 H 0.106 0.894 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.046 0.954 43 H 0.077 0.923 44 H 0.049 0.951 45 H 0.044 0.956 46 H 0.203 0.797 47 H 0.058 0.942 48 H 0.076 0.924 49 H 0.058 0.942 50 H 0.048 0.952 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.221 0.568 -27.260 27.762 hybrid contribution -0.117 0.819 2.886 3.002 sum -5.339 1.386 -24.375 24.991 Atomic orbital electron populations 1.22632 0.86718 1.02947 1.00914 1.63738 1.08919 1.14497 1.38435 1.22919 0.98027 0.89297 0.98060 1.22771 1.01011 0.94610 0.98303 1.22476 1.01008 0.98650 0.90621 0.84932 1.20650 0.76290 0.79091 0.91418 1.90699 1.55784 1.43919 1.57171 1.49027 1.52022 1.24726 1.08493 1.22859 0.99238 0.84709 0.95039 1.22743 1.00324 0.97018 0.90906 0.86524 1.22400 0.91887 1.00388 0.99435 1.22422 0.98379 1.00274 0.94210 1.22262 0.94156 1.00132 0.97777 1.22160 0.95498 0.92773 0.96331 1.20769 0.95439 0.96084 0.83134 1.42574 1.39798 1.53249 1.03013 1.19631 1.10230 1.19484 0.87988 0.90261 1.25590 1.00762 1.00730 1.00006 1.69836 1.35840 1.37440 1.19277 0.85201 0.78380 0.77868 0.78253 1.20332 1.22587 1.20154 1.22171 0.99071 0.94669 0.83730 1.22944 0.92819 0.99511 0.91194 0.96358 0.89745 0.90460 0.88324 0.91976 0.89162 0.92688 0.86639 0.89436 0.88660 0.90308 0.92946 0.91043 0.95391 0.92350 0.95111 0.95572 0.79706 0.94219 0.92415 0.94202 0.95164 0.87489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.12 127.69 1.17 1.39 16 2 N -0.53 -8.31 5.45 -911.66 -4.96 -13.27 16 3 C 0.04 0.65 6.90 86.64 0.60 1.25 16 4 C -0.13 -2.46 6.25 31.88 0.20 -2.26 16 5 C -0.11 -2.03 2.69 -10.05 -0.03 -2.05 16 6 H 0.13 1.79 7.35 -2.39 -0.02 1.78 16 7 C 0.54 15.53 7.11 87.66 0.62 16.15 16 8 O -0.59 -23.79 16.05 -3.04 -0.05 -23.84 16 9 N -0.61 -16.35 2.52 -807.60 -2.04 -18.38 16 10 C 0.10 1.76 6.21 86.52 0.54 2.29 16 11 C -0.09 -1.77 3.60 -9.29 -0.03 -1.80 16 12 H 0.12 1.89 7.91 -2.39 -0.02 1.87 16 13 C -0.10 -1.71 6.27 31.62 0.20 -1.52 16 14 C -0.12 -2.71 6.52 31.85 0.21 -2.50 16 15 C -0.11 -3.45 5.28 31.62 0.17 -3.28 16 16 C -0.07 -2.04 0.67 -50.55 -0.03 -2.08 16 17 C 0.17 6.59 5.16 86.38 0.45 7.03 16 18 N -0.74 -38.05 5.25 -343.45 -1.80 -39.85 16 19 C -0.24 -13.57 9.99 84.04 0.84 -12.73 16 20 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 21 C -0.08 -4.63 5.50 84.86 0.47 -4.17 16 22 N -0.97 -61.71 13.06 21.65 0.28 -61.43 16 23 Si 0.97 46.99 29.55 68.60 2.03 49.02 16 24 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 25 H -0.30 -14.70 7.11 99.48 0.71 -14.00 16 26 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 27 C 0.13 4.45 5.64 86.65 0.49 4.94 16 28 C 0.06 1.10 6.18 86.78 0.54 1.64 16 29 H 0.02 0.29 8.09 -2.39 -0.02 0.27 16 30 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.06 0.87 7.58 -2.38 -0.02 0.86 16 34 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.05 1.41 7.23 -2.39 -0.02 1.39 16 36 H 0.12 1.19 6.35 -2.39 -0.02 1.18 16 37 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.09 1.04 7.45 -2.39 -0.02 1.02 16 39 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.05 1.32 7.66 -2.39 -0.02 1.31 16 41 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 42 H 0.03 1.09 7.47 -2.39 -0.02 1.08 16 43 H 0.06 2.04 7.96 -2.39 -0.02 2.02 16 44 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.03 0.98 8.14 -2.39 -0.02 0.97 16 46 H 0.37 20.84 7.11 -92.70 -0.66 20.18 16 47 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 48 H 0.06 2.18 7.99 -2.38 -0.02 2.16 16 49 H 0.04 1.73 7.24 -2.39 -0.02 1.71 16 50 H 0.03 0.67 7.66 -2.39 -0.02 0.65 16 51 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -75.42 388.89 0.08 -75.34 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: 0.24 Total: 30.13 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: 6.38 Total: 2.30 kcal Atomic # 7 Polarization: -124.42 SS G_CDS: -8.52 Total: -132.94 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.05 Total: -23.84 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Total: -75.42 0.08 -75.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112578382.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.938 kcal (2) G-P(sol) polarization free energy of solvation -75.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds