Wall clock time and date at job start Fri Apr 10 2020 18:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.46140 * 2 1 4 4 C 1.53042 * 109.46047 * 119.97568 * 2 1 3 5 5 C 1.53193 * 109.31287 * 58.64140 * 4 2 1 6 6 N 1.46922 * 108.77731 * 54.63405 * 5 4 2 7 7 C 1.34776 * 120.62945 * 126.36787 * 6 5 4 8 8 O 1.21284 * 119.99892 * 184.68945 * 7 6 5 9 9 C 1.50692 * 120.00089 * 4.69145 * 7 6 5 10 10 C 1.56242 * 117.38959 * 55.89867 * 9 7 6 11 11 C 1.54977 * 103.18229 * 159.35732 * 10 9 7 12 12 N 1.49517 * 105.24058 * 0.65528 * 11 10 9 13 13 C 1.49550 * 105.86827 * 71.24901 * 12 11 10 14 14 C 1.54656 * 105.33126 * 288.65253 * 13 12 11 15 15 C 1.50463 * 102.03958 * 324.87149 * 12 11 10 16 16 C 1.46928 * 118.73648 * 306.64656 * 6 5 4 17 17 C 1.52756 * 109.01183 * 53.30680 * 16 6 5 18 18 H 1.09005 * 109.38327 * 65.51441 * 17 16 6 19 19 C 1.52995 * 109.56540 * 185.54895 * 17 16 6 20 20 N 1.46490 * 109.47428 * 294.96876 * 19 17 16 21 21 C 1.36945 * 120.00287 * 179.97438 * 20 19 17 22 22 H 1.08001 * 119.99289 * 0.02562 * 21 20 19 23 23 C 1.38811 * 120.00157 * 179.97438 * 21 20 19 24 24 N 1.31618 * 119.99504 * 180.02562 * 23 21 20 25 25 Si 1.86796 * 120.00319 * 0.02562 * 23 21 20 26 26 H 1.48507 * 109.47187 * 89.99630 * 25 23 21 27 27 H 1.48492 * 109.47549 * 209.99973 * 25 23 21 28 28 H 1.48506 * 109.46947 * 330.00229 * 25 23 21 29 29 H 1.09004 * 109.47004 * 300.02690 * 1 2 3 30 30 H 1.08997 * 109.47614 * 60.02273 * 1 2 3 31 31 H 1.08998 * 109.47267 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.49641 * 298.68528 * 4 2 1 33 33 H 1.09001 * 109.49863 * 178.58957 * 4 2 1 34 34 H 1.09004 * 109.58212 * 294.84480 * 5 4 2 35 35 H 1.08999 * 109.70333 * 174.49237 * 5 4 2 36 36 H 1.09002 * 110.67241 * 277.80058 * 10 9 7 37 37 H 1.09007 * 110.66887 * 40.93838 * 10 9 7 38 38 H 1.08999 * 110.28958 * 241.72459 * 11 10 9 39 39 H 1.08998 * 110.31738 * 119.60245 * 11 10 9 40 40 H 1.08999 * 110.21004 * 169.70818 * 13 12 11 41 41 H 1.09000 * 110.39104 * 47.68264 * 13 12 11 42 42 H 1.08999 * 110.66729 * 240.97175 * 14 13 12 43 43 H 1.08995 * 110.82011 * 117.90226 * 14 13 12 44 44 H 1.09005 * 111.90471 * 297.80671 * 15 12 11 45 45 H 1.08994 * 111.91095 * 171.67205 * 15 12 11 46 46 H 1.09004 * 109.58335 * 173.14590 * 16 6 5 47 47 H 1.08996 * 109.58487 * 293.56426 * 16 6 5 48 48 H 1.09000 * 109.46879 * 54.97105 * 19 17 16 49 49 H 1.09002 * 109.47427 * 174.96148 * 19 17 16 50 50 H 0.96999 * 120.00725 * 359.97438 * 20 19 17 51 51 H 0.97011 * 119.99305 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7210 1.2500 5 6 1.4993 -2.1543 1.2641 6 7 1.8619 -2.8090 -0.0002 7 6 2.5156 -3.9876 -0.0004 8 8 2.8844 -4.4763 -1.0473 9 6 2.7881 -4.6982 1.3002 10 6 1.5624 -5.0188 2.2147 11 6 2.0874 -6.1602 3.1221 12 7 3.5025 -6.3834 2.6939 13 6 4.2675 -5.1910 3.1728 14 6 3.8115 -4.0223 2.2683 15 6 3.4255 -6.1319 1.2124 16 6 1.5039 -2.1513 -1.2644 17 6 2.0395 -0.7208 -1.2502 18 1 3.1293 -0.7426 -1.2388 19 6 1.5566 0.0195 -2.4990 20 7 2.1417 -0.5997 -3.6907 21 6 1.8502 -0.1035 -4.9334 22 1 1.1893 0.7446 -5.0347 23 6 2.4051 -0.6900 -6.0625 24 7 2.1253 -0.2127 -7.2568 25 14 3.5489 -2.1564 -5.8871 26 1 2.7554 -3.4110 -5.9297 27 1 4.5312 -2.1540 -7.0007 28 1 4.2692 -2.0701 -4.5913 29 1 -0.3633 0.5143 0.8898 30 1 -0.3634 0.5134 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.6960 -0.1936 2.1398 33 1 3.1296 -0.7433 1.2381 34 1 0.4143 -2.1345 1.3674 35 1 1.9358 -2.7035 2.0983 36 1 1.2887 -4.1481 2.8105 37 1 0.7161 -5.3597 1.6182 38 1 1.4994 -7.0652 2.9695 39 1 2.0526 -5.8580 4.1687 40 1 5.3384 -5.3604 3.0600 41 1 4.0269 -4.9786 4.2144 42 1 4.6555 -3.6143 1.7121 43 1 3.3274 -3.2430 2.8569 44 1 2.7648 -6.8409 0.7134 45 1 4.4130 -6.1106 0.7516 46 1 1.9455 -2.6972 -2.0981 47 1 0.4194 -2.1314 -1.3715 48 1 0.4695 -0.0365 -2.5569 49 1 1.8640 1.0639 -2.4440 50 1 2.7356 -1.3612 -3.5997 51 1 2.5129 -0.6228 -8.0459 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133245152.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:25:23 Heat of formation + Delta-G solvation = -18.224670 kcal Electronic energy + Delta-G solvation = -29335.301315 eV Core-core repulsion = 25655.261108 eV Total energy + Delta-G solvation = -3680.040207 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.46990 -40.85402 -39.12528 -36.84812 -35.01165 -33.70616 -32.40255 -31.64339 -31.32755 -29.23151 -28.73888 -27.43518 -25.97640 -24.63740 -23.47253 -23.02022 -22.60536 -21.59643 -20.59772 -19.60565 -19.08764 -17.72966 -17.40736 -17.15341 -16.83881 -16.48996 -16.27775 -16.05271 -15.88884 -15.39602 -15.19794 -14.73712 -14.61573 -14.31784 -14.23020 -14.00256 -13.80343 -13.74326 -13.40184 -13.17503 -13.04763 -12.94675 -12.75335 -12.67898 -12.54078 -12.42499 -12.29542 -12.22555 -12.05891 -11.90926 -11.79456 -11.62716 -11.31876 -11.27736 -11.23886 -11.02556 -10.84745 -10.04094 -9.64997 -9.34331 -8.10190 -5.41635 1.28811 1.32784 1.37104 1.42570 1.85348 2.39063 2.75558 3.22083 3.31533 3.41902 3.46972 3.59587 3.72043 3.80517 3.86329 3.98021 4.02000 4.05551 4.10220 4.22728 4.28836 4.30826 4.45867 4.46879 4.50030 4.51040 4.59298 4.64552 4.72147 4.73917 4.75540 4.81819 4.87754 4.91716 4.93657 4.98918 5.03532 5.06047 5.12861 5.15728 5.20797 5.27268 5.38238 5.44636 5.48977 5.58675 5.68648 5.70399 6.15276 6.35311 7.00923 7.06294 7.78606 7.94855 9.11501 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.015394 B = 0.003927 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.505889 B = 7129.074064 C = 8430.029041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.079 4.079 3 H 0.081 0.919 4 C -0.123 4.123 5 C 0.090 3.910 6 N -0.598 5.598 7 C 0.540 3.460 8 O -0.591 6.591 9 C -0.132 4.132 10 C -0.129 4.129 11 C 0.015 3.985 12 N -0.476 5.476 13 C 0.016 3.984 14 C -0.129 4.129 15 C 0.035 3.965 16 C 0.122 3.878 17 C -0.094 4.094 18 H 0.055 0.945 19 C 0.161 3.839 20 N -0.763 5.763 21 C -0.230 4.230 22 H 0.066 0.934 23 C -0.054 4.054 24 N -0.978 5.978 25 Si 0.943 3.057 26 H -0.285 1.285 27 H -0.288 1.288 28 H -0.268 1.268 29 H 0.081 0.919 30 H 0.045 0.955 31 H 0.057 0.943 32 H 0.113 0.887 33 H 0.061 0.939 34 H 0.090 0.910 35 H 0.114 0.886 36 H 0.109 0.891 37 H 0.066 0.934 38 H 0.084 0.916 39 H 0.107 0.893 40 H 0.081 0.919 41 H 0.108 0.892 42 H 0.060 0.940 43 H 0.109 0.891 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.049 0.951 47 H 0.078 0.922 48 H 0.036 0.964 49 H 0.030 0.970 50 H 0.360 0.640 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.722 -6.721 33.248 33.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.098 4.098 3 H 0.099 0.901 4 C -0.161 4.161 5 C -0.030 4.030 6 N -0.329 5.329 7 C 0.328 3.672 8 O -0.471 6.471 9 C -0.137 4.137 10 C -0.168 4.168 11 C -0.114 4.114 12 N -0.196 5.196 13 C -0.113 4.113 14 C -0.168 4.168 15 C -0.095 4.095 16 C -0.001 4.001 17 C -0.114 4.114 18 H 0.074 0.926 19 C 0.035 3.965 20 N -0.408 5.408 21 C -0.361 4.361 22 H 0.084 0.916 23 C -0.246 4.246 24 N -0.629 5.629 25 Si 0.772 3.228 26 H -0.212 1.212 27 H -0.214 1.214 28 H -0.193 1.193 29 H 0.100 0.900 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.131 0.869 33 H 0.080 0.920 34 H 0.108 0.892 35 H 0.131 0.869 36 H 0.127 0.873 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.125 0.875 40 H 0.100 0.900 41 H 0.126 0.874 42 H 0.078 0.922 43 H 0.127 0.873 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.068 0.932 47 H 0.096 0.904 48 H 0.054 0.946 49 H 0.048 0.952 50 H 0.193 0.807 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.350 -7.503 32.843 33.716 hybrid contribution 0.528 -0.004 -1.801 1.877 sum -0.821 -7.507 31.043 31.948 Atomic orbital electron populations 1.21971 0.94051 1.02171 1.02583 1.21060 0.96891 0.99411 0.92480 0.90107 1.21960 1.00877 0.94751 0.98495 1.22461 1.01959 0.93895 0.84730 1.48140 1.56318 1.20321 1.08167 1.20191 0.76394 0.80753 0.89850 1.90724 1.53358 1.67558 1.35494 1.23619 1.00252 0.97538 0.92254 1.23425 0.95270 1.01097 0.96974 1.23762 0.89309 0.97976 1.00344 1.69989 1.09866 1.35546 1.04202 1.23685 0.99779 0.87770 1.00064 1.23348 0.97575 0.99381 0.96511 1.24248 1.00644 0.93072 0.91538 1.21384 1.00047 0.92733 0.85910 1.21526 0.99723 0.94284 0.95842 0.92644 1.20878 0.96342 0.95110 0.84155 1.42894 1.57440 1.37718 1.02761 1.19088 1.22354 1.10949 0.83716 0.91635 1.25304 1.02366 1.01969 0.94939 1.69844 1.50259 1.45028 0.97788 0.85603 0.79583 0.80460 0.77198 1.21174 1.21395 1.19330 0.90030 0.93540 0.92451 0.86871 0.92033 0.89196 0.86870 0.87294 0.91482 0.89758 0.87485 0.90049 0.87373 0.92156 0.87309 0.90391 0.90793 0.93248 0.90414 0.94575 0.95225 0.80709 0.93216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 8.11 71.98 0.58 -2.01 16 2 C -0.08 -1.53 2.71 -10.77 -0.03 -1.56 16 3 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 4 C -0.12 -1.58 5.63 30.67 0.17 -1.41 16 5 C 0.09 1.20 5.04 86.36 0.44 1.64 16 6 N -0.60 -14.48 2.98 -819.75 -2.44 -16.92 16 7 C 0.54 15.33 7.22 87.65 0.63 15.96 16 8 O -0.59 -23.70 15.99 -3.04 -0.05 -23.75 16 9 C -0.13 -2.46 0.92 -49.21 -0.05 -2.51 16 10 C -0.13 -1.51 5.26 32.40 0.17 -1.34 16 11 C 0.01 0.16 6.62 86.47 0.57 0.73 16 12 N -0.48 -7.54 6.94 -855.75 -5.94 -13.49 16 13 C 0.02 0.18 6.60 86.35 0.57 0.75 16 14 C -0.13 -1.68 5.47 32.29 0.18 -1.50 16 15 C 0.03 0.74 6.06 87.06 0.53 1.27 16 16 C 0.12 3.82 5.04 86.22 0.43 4.25 16 17 C -0.09 -2.79 2.14 -10.86 -0.02 -2.81 16 18 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 19 C 0.16 6.18 5.19 86.38 0.45 6.63 16 20 N -0.76 -38.05 5.18 -343.47 -1.78 -39.83 16 21 C -0.23 -13.71 10.47 84.03 0.88 -12.83 16 22 H 0.07 4.17 8.06 -2.91 -0.02 4.14 16 23 C -0.05 -3.34 5.50 84.86 0.47 -2.87 16 24 N -0.98 -64.76 13.97 21.65 0.30 -64.46 16 25 Si 0.94 50.15 27.74 68.60 1.90 52.05 16 26 H -0.29 -15.19 7.11 99.48 0.71 -14.48 16 27 H -0.29 -15.06 7.11 99.48 0.71 -14.36 16 28 H -0.27 -13.65 6.52 99.48 0.65 -13.00 16 29 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.05 0.99 6.57 -2.39 -0.02 0.97 16 31 H 0.06 0.99 4.99 -2.39 -0.01 0.97 16 32 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 34 H 0.09 0.95 6.69 -2.38 -0.02 0.93 16 35 H 0.11 0.97 2.42 -2.39 -0.01 0.96 16 36 H 0.11 0.64 6.09 -2.39 -0.01 0.63 16 37 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 38 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.11 0.61 7.69 -2.39 -0.02 0.59 16 40 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.11 0.68 7.69 -2.39 -0.02 0.66 16 42 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.11 0.76 6.08 -2.39 -0.01 0.75 16 44 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 45 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.05 2.02 6.19 -2.38 -0.01 2.00 16 47 H 0.08 2.31 6.70 -2.39 -0.02 2.29 16 48 H 0.04 1.37 6.73 -2.39 -0.02 1.36 16 49 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 50 H 0.36 18.19 4.75 -92.71 -0.44 17.75 16 51 H 0.26 16.33 8.31 -92.70 -0.77 15.56 16 Total: -1.00 -80.29 368.18 -1.60 -81.89 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 0.43 Total: 22.13 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: 5.97 Total: 2.38 kcal Atomic # 7 Polarization: -124.84 SS G_CDS: -9.86 Total: -134.70 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.05 Total: -23.75 kcal Atomic # 14 Polarization: 50.15 SS G_CDS: 1.90 Total: 52.05 kcal Total: -80.29 -1.60 -81.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133245152.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.661 kcal (2) G-P(sol) polarization free energy of solvation -80.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds