Wall clock time and date at job start Fri Apr 10 2020 18:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 120.00177 * 2 1 4 4 H 1.48497 * 109.47477 * 274.98946 * 3 2 1 5 5 H 1.48503 * 109.46925 * 34.99009 * 3 2 1 6 6 H 1.48501 * 109.47086 * 154.98421 * 3 2 1 7 7 C 1.38813 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99734 * 187.32618 * 7 2 1 9 9 N 1.36931 * 120.00380 * 7.32533 * 7 2 1 10 10 C 1.46647 * 125.29212 * 175.33539 * 9 7 2 11 11 C 1.53524 * 107.05199 * 197.40353 * 10 9 7 12 12 H 1.09001 * 112.80393 * 211.53820 * 11 10 9 13 13 C 1.54784 * 109.68413 * 84.09343 * 11 10 9 14 14 C 1.54947 * 101.45469 * 212.92487 * 13 11 10 15 15 N 1.47346 * 104.90237 * 37.25233 * 14 13 11 16 16 C 1.34775 * 125.52581 * 156.74447 * 15 14 13 17 17 O 1.21281 * 120.00223 * 180.02562 * 16 15 14 18 18 C 1.50700 * 119.99737 * 359.97438 * 16 15 14 19 19 C 1.53002 * 109.47157 * 180.02562 * 18 16 15 20 20 C 1.52992 * 109.47395 * 180.02562 * 19 18 16 21 21 N 1.46897 * 109.47622 * 180.02562 * 20 19 18 22 22 C 1.48533 * 110.99836 * 52.60017 * 21 20 19 23 23 C 1.54940 * 103.22878 * 159.72507 * 22 21 20 24 24 C 1.54599 * 102.91852 * 322.58934 * 23 22 21 25 25 C 1.47901 * 111.00650 * 169.99857 * 21 20 19 26 26 C 1.47258 * 108.95148 * 336.74101 * 15 14 13 27 27 H 1.09000 * 112.73074 * 236.14095 * 26 15 14 28 28 C 1.46502 * 125.28823 * 355.36676 * 9 7 2 29 29 H 0.96996 * 120.00146 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.92323 * 316.75451 * 10 9 7 31 31 H 1.08998 * 109.91855 * 77.85718 * 10 9 7 32 32 H 1.09000 * 111.03102 * 330.96407 * 13 11 10 33 33 H 1.08996 * 111.02896 * 94.87954 * 13 11 10 34 34 H 1.08995 * 110.35716 * 156.11144 * 14 13 11 35 35 H 1.09004 * 110.35071 * 278.29372 * 14 13 11 36 36 H 1.08992 * 109.47338 * 300.00582 * 18 16 15 37 37 H 1.09005 * 109.46754 * 60.00884 * 18 16 15 38 38 H 1.08999 * 109.47153 * 300.00773 * 19 18 16 39 39 H 1.09005 * 109.46561 * 60.00164 * 19 18 16 40 40 H 1.08999 * 109.47440 * 300.00399 * 20 19 18 41 41 H 1.09007 * 109.47124 * 59.99895 * 20 19 18 42 42 H 1.08999 * 110.67031 * 278.16087 * 22 21 20 43 43 H 1.09001 * 110.66761 * 41.29425 * 22 21 20 44 44 H 1.08998 * 110.72389 * 204.23442 * 23 22 21 45 45 H 1.08999 * 110.72419 * 80.94582 * 23 22 21 46 46 H 1.09000 * 110.30516 * 263.03701 * 24 23 22 47 47 H 1.09004 * 110.39094 * 140.91379 * 24 23 22 48 48 H 1.08997 * 109.91287 * 333.51553 * 25 21 20 49 49 H 1.09001 * 109.91038 * 94.60225 * 25 21 20 50 50 H 1.09000 * 109.71174 * 58.28611 * 28 9 7 51 51 H 1.08997 * 109.66877 * 297.71916 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1073 -1.3947 5 1 1.5044 2.6198 0.8029 6 1 3.5965 1.4119 0.5921 7 6 2.0102 -1.2022 -0.0005 8 1 3.0836 -1.2061 0.1187 9 7 1.3340 -2.3832 -0.1523 10 6 1.9553 -3.7066 -0.2669 11 6 0.8961 -4.6521 -0.8509 12 1 1.0031 -5.6771 -0.4960 13 6 0.8858 -4.5338 -2.3942 14 6 -0.6110 -4.7781 -2.7116 15 7 -1.3432 -4.1166 -1.6174 16 6 -2.6178 -3.6827 -1.6780 17 8 -3.1233 -3.1491 -0.7133 18 6 -3.4144 -3.8596 -2.9450 19 6 -4.8188 -3.2850 -2.7488 20 6 -5.6278 -3.4651 -4.0348 21 7 -6.9760 -2.9128 -3.8467 22 6 -6.9138 -1.5151 -3.3481 23 6 -8.3093 -0.9472 -3.7097 24 6 -8.6033 -1.5993 -5.0802 25 6 -7.7073 -2.8507 -5.1307 26 6 -0.4567 -4.0064 -0.4467 27 1 -0.8793 -4.4668 0.4464 28 6 -0.1227 -2.5209 -0.2260 29 1 -0.4850 0.8400 -0.0004 30 1 2.8161 -3.6562 -0.9335 31 1 2.2677 -4.0566 0.7170 32 1 1.1956 -3.5383 -2.7123 33 1 1.5124 -5.3007 -2.8495 34 1 -0.8737 -4.3291 -3.6694 35 1 -0.8267 -5.8465 -2.7226 36 1 -2.9187 -3.3357 -3.7620 37 1 -3.4859 -4.9207 -3.1840 38 1 -5.3148 -3.8086 -1.9315 39 1 -4.7470 -2.2238 -2.5099 40 1 -5.1320 -2.9418 -4.8523 41 1 -5.6995 -4.5263 -4.2733 42 1 -6.7592 -1.4979 -2.2693 43 1 -6.1280 -0.9589 -3.8592 44 1 -8.2726 0.1385 -3.7990 45 1 -9.0519 -1.2497 -2.9714 46 1 -8.3436 -0.9152 -5.8881 47 1 -9.6535 -1.8830 -5.1484 48 1 -7.0009 -2.7686 -5.9567 49 1 -8.3192 -3.7444 -5.2531 50 1 -0.5062 -1.9301 -1.0579 51 1 -0.5713 -2.1777 0.7063 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190325118.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:30 Heat of formation + Delta-G solvation = -2.603754 kcal Electronic energy + Delta-G solvation = -28071.273372 eV Core-core repulsion = 24391.910539 eV Total energy + Delta-G solvation = -3679.362833 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.06658 -39.13925 -37.84897 -34.85250 -34.34519 -32.24552 -31.03495 -30.59746 -29.09759 -28.65267 -26.99113 -25.78943 -24.41873 -22.89251 -22.14669 -21.01887 -20.63672 -20.17761 -19.45989 -18.50237 -17.05153 -16.60750 -16.23230 -15.90662 -15.82958 -15.25746 -14.80251 -14.50702 -14.30825 -13.97076 -13.55820 -13.44619 -13.19257 -13.12260 -12.66299 -12.49266 -12.45839 -12.10692 -11.79990 -11.68769 -11.60694 -11.48760 -11.41930 -11.24070 -11.16070 -11.05525 -10.96408 -10.77121 -10.75853 -10.61219 -10.47651 -10.16922 -10.00569 -9.83225 -9.67445 -9.31341 -8.56623 -8.53057 -8.11137 -6.77240 -5.65343 -3.00724 3.12184 3.36008 3.42091 3.46848 3.49859 3.86023 4.43715 4.51691 4.52990 4.67530 4.75315 4.88617 4.97916 5.04338 5.09454 5.14340 5.23959 5.31757 5.37140 5.44314 5.49919 5.51560 5.54708 5.56981 5.57679 5.60202 5.66345 5.70182 5.79157 5.81502 5.84920 5.93740 5.96634 5.98495 6.09198 6.18237 6.23917 6.35887 6.42440 6.61965 6.63733 6.69247 6.73870 6.89697 6.90965 7.62050 7.69660 7.94747 8.05770 8.33508 8.68297 9.26747 9.87990 10.51547 11.44225 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.012928 B = 0.003125 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.283494 B = 8958.968709 C =10571.018465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.005 4.005 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.235 4.235 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.145 3.855 11 C -0.111 4.111 12 H 0.087 0.913 13 C -0.121 4.121 14 C 0.103 3.897 15 N -0.609 5.609 16 C 0.524 3.476 17 O -0.529 6.529 18 C -0.132 4.132 19 C -0.104 4.104 20 C 0.048 3.952 21 N -0.518 5.518 22 C 0.031 3.969 23 C -0.125 4.125 24 C -0.131 4.131 25 C 0.035 3.965 26 C 0.113 3.887 27 H 0.079 0.921 28 C 0.179 3.821 29 H 0.252 0.748 30 H 0.038 0.962 31 H 0.016 0.984 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.035 0.965 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.047 0.953 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.065 0.935 47 H 0.070 0.930 48 H 0.043 0.957 49 H 0.077 0.923 50 H 0.056 0.944 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.100 -10.535 -12.312 19.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.202 4.202 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.363 4.363 8 H 0.096 0.904 9 N -0.330 5.330 10 C 0.018 3.982 11 C -0.131 4.131 12 H 0.105 0.895 13 C -0.159 4.159 14 C -0.020 4.020 15 N -0.344 5.344 16 C 0.312 3.688 17 O -0.405 6.405 18 C -0.173 4.173 19 C -0.142 4.142 20 C -0.080 4.080 21 N -0.242 5.242 22 C -0.096 4.096 23 C -0.163 4.163 24 C -0.170 4.170 25 C -0.093 4.093 26 C 0.010 3.990 27 H 0.097 0.903 28 C 0.054 3.946 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.033 0.967 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.053 0.947 41 H 0.093 0.907 42 H 0.106 0.894 43 H 0.065 0.935 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.083 0.917 47 H 0.089 0.911 48 H 0.061 0.939 49 H 0.095 0.905 50 H 0.074 0.926 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -11.789 -10.333 -11.407 19.387 hybrid contribution 1.005 1.335 -0.690 1.808 sum -10.783 -8.998 -12.097 18.536 Atomic orbital electron populations 1.70034 1.04761 1.25009 1.55953 1.24864 0.95653 0.97681 1.02020 0.86154 0.78693 0.83843 0.77416 1.21707 1.21765 1.20626 1.19004 0.91092 0.82465 1.43741 0.90384 1.44153 1.01580 1.01020 1.86197 1.21064 0.94013 0.86232 0.96879 1.22951 0.95654 0.98945 0.95546 0.89463 1.22740 0.94419 1.03195 0.95517 1.22259 0.92572 0.96572 0.90597 1.48589 1.11715 1.59391 1.14687 1.20166 0.80521 0.78210 0.89871 1.90738 1.69320 1.42167 1.38268 1.21571 0.96245 1.02820 0.96621 1.21384 0.92755 1.02786 0.97310 1.22330 0.88256 1.00254 0.97169 1.64794 1.15722 1.19500 1.24230 1.23290 0.96496 0.88242 1.01601 1.22495 0.97234 0.99758 0.96833 1.22396 1.00100 0.96621 0.97841 1.22870 0.96830 0.98648 0.90989 1.22817 0.88189 1.00267 0.87743 0.90326 1.21264 0.84101 0.87743 1.01524 0.93724 0.94378 0.96670 0.89567 0.90610 0.91248 0.91971 0.89404 0.89408 0.90331 0.90798 0.94711 0.90674 0.89381 0.93513 0.91066 0.90731 0.91655 0.91123 0.93903 0.90503 0.92636 0.93952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.94 10.28 55.49 0.57 -27.37 16 2 C -0.01 -0.15 5.47 -17.43 -0.10 -0.24 16 3 Si 0.91 22.52 29.56 -169.99 -5.02 17.50 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.23 -6.64 10.23 -15.06 -0.15 -6.79 16 8 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 9 N -0.60 -15.60 3.37 -172.27 -0.58 -16.18 16 10 C 0.14 2.94 6.50 -3.69 -0.02 2.91 16 11 C -0.11 -1.85 3.97 -88.21 -0.35 -2.20 16 12 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 13 C -0.12 -1.73 6.32 -24.76 -0.16 -1.89 16 14 C 0.10 1.35 6.66 -2.55 -0.02 1.34 16 15 N -0.61 -10.66 2.83 -161.82 -0.46 -11.11 16 16 C 0.52 9.52 7.56 -10.99 -0.08 9.44 16 17 O -0.53 -12.01 16.07 5.56 0.09 -11.92 16 18 C -0.13 -1.70 4.71 -27.88 -0.13 -1.83 16 19 C -0.10 -1.36 4.16 -26.73 -0.11 -1.47 16 20 C 0.05 0.51 5.03 -3.83 -0.02 0.49 16 21 N -0.52 -5.77 5.40 -230.46 -1.24 -7.01 16 22 C 0.03 0.35 5.10 -1.90 -0.01 0.34 16 23 C -0.13 -1.14 7.06 -24.87 -0.18 -1.31 16 24 C -0.13 -1.06 6.93 -25.38 -0.18 -1.24 16 25 C 0.03 0.31 6.70 -2.76 -0.02 0.30 16 26 C 0.11 2.26 3.81 -65.88 -0.25 2.01 16 27 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 28 C 0.18 4.61 4.63 -3.59 -0.02 4.59 16 29 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 30 H 0.04 0.74 7.95 -51.93 -0.41 0.33 16 31 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.09 1.50 7.93 -51.93 -0.41 1.09 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.80 7.49 -51.93 -0.39 0.41 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 1.04 7.85 -51.93 -0.41 0.63 16 37 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 39 H 0.07 1.12 6.75 -51.93 -0.35 0.76 16 40 H 0.03 0.36 7.81 -51.93 -0.41 -0.05 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.09 1.07 7.66 -51.93 -0.40 0.68 16 43 H 0.05 0.54 8.00 -51.93 -0.42 0.12 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.04 0.37 7.57 -51.93 -0.39 -0.02 16 49 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 50 H 0.06 1.61 6.83 -51.93 -0.35 1.26 16 51 H 0.04 1.27 7.58 -51.93 -0.39 0.88 16 LS Contribution 389.07 15.07 5.86 5.86 Total: -1.00 -34.06 389.07 -11.95 -46.01 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -9.37 Total: -0.21 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -1.79 Total: 4.45 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: -1.71 Total: -61.68 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.09 Total: -11.92 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.06 -11.95 -46.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190325118.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.402 kcal (2) G-P(sol) polarization free energy of solvation -34.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds