Wall clock time and date at job start Fri Apr 10 2020 18:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 120.00177 * 2 1 4 4 H 1.48497 * 109.47477 * 274.98946 * 3 2 1 5 5 H 1.48503 * 109.46925 * 34.99009 * 3 2 1 6 6 H 1.48501 * 109.47086 * 154.98421 * 3 2 1 7 7 C 1.38813 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99734 * 187.32618 * 7 2 1 9 9 N 1.36931 * 120.00380 * 7.32533 * 7 2 1 10 10 C 1.46647 * 125.29212 * 175.33539 * 9 7 2 11 11 C 1.53524 * 107.05199 * 197.40353 * 10 9 7 12 12 H 1.09001 * 112.80393 * 211.53820 * 11 10 9 13 13 C 1.54784 * 109.68413 * 84.09343 * 11 10 9 14 14 C 1.54947 * 101.45469 * 212.92487 * 13 11 10 15 15 N 1.47346 * 104.90237 * 37.25233 * 14 13 11 16 16 C 1.34775 * 125.52581 * 156.74447 * 15 14 13 17 17 O 1.21281 * 120.00223 * 180.02562 * 16 15 14 18 18 C 1.50700 * 119.99737 * 359.97438 * 16 15 14 19 19 C 1.53002 * 109.47157 * 180.02562 * 18 16 15 20 20 C 1.52992 * 109.47395 * 180.02562 * 19 18 16 21 21 N 1.46897 * 109.47622 * 180.02562 * 20 19 18 22 22 C 1.48533 * 110.99836 * 52.60017 * 21 20 19 23 23 C 1.54940 * 103.22878 * 159.72507 * 22 21 20 24 24 C 1.54599 * 102.91852 * 322.58934 * 23 22 21 25 25 C 1.47901 * 111.00650 * 169.99857 * 21 20 19 26 26 C 1.47258 * 108.95148 * 336.74101 * 15 14 13 27 27 H 1.09000 * 112.73074 * 236.14095 * 26 15 14 28 28 C 1.46502 * 125.28823 * 355.36676 * 9 7 2 29 29 H 0.96996 * 120.00146 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.92323 * 316.75451 * 10 9 7 31 31 H 1.08998 * 109.91855 * 77.85718 * 10 9 7 32 32 H 1.09000 * 111.03102 * 330.96407 * 13 11 10 33 33 H 1.08996 * 111.02896 * 94.87954 * 13 11 10 34 34 H 1.08995 * 110.35716 * 156.11144 * 14 13 11 35 35 H 1.09004 * 110.35071 * 278.29372 * 14 13 11 36 36 H 1.08992 * 109.47338 * 300.00582 * 18 16 15 37 37 H 1.09005 * 109.46754 * 60.00884 * 18 16 15 38 38 H 1.08999 * 109.47153 * 300.00773 * 19 18 16 39 39 H 1.09005 * 109.46561 * 60.00164 * 19 18 16 40 40 H 1.08999 * 109.47440 * 300.00399 * 20 19 18 41 41 H 1.09007 * 109.47124 * 59.99895 * 20 19 18 42 42 H 1.08999 * 110.67031 * 278.16087 * 22 21 20 43 43 H 1.09001 * 110.66761 * 41.29425 * 22 21 20 44 44 H 1.08998 * 110.72389 * 204.23442 * 23 22 21 45 45 H 1.08999 * 110.72419 * 80.94582 * 23 22 21 46 46 H 1.09000 * 110.30516 * 263.03701 * 24 23 22 47 47 H 1.09004 * 110.39094 * 140.91379 * 24 23 22 48 48 H 1.08997 * 109.91287 * 333.51553 * 25 21 20 49 49 H 1.09001 * 109.91038 * 94.60225 * 25 21 20 50 50 H 1.09000 * 109.71174 * 58.28611 * 28 9 7 51 51 H 1.08997 * 109.66877 * 297.71916 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1073 -1.3947 5 1 1.5044 2.6198 0.8029 6 1 3.5965 1.4119 0.5921 7 6 2.0102 -1.2022 -0.0005 8 1 3.0836 -1.2061 0.1187 9 7 1.3340 -2.3832 -0.1523 10 6 1.9553 -3.7066 -0.2669 11 6 0.8961 -4.6521 -0.8509 12 1 1.0031 -5.6771 -0.4960 13 6 0.8858 -4.5338 -2.3942 14 6 -0.6110 -4.7781 -2.7116 15 7 -1.3432 -4.1166 -1.6174 16 6 -2.6178 -3.6827 -1.6780 17 8 -3.1233 -3.1491 -0.7133 18 6 -3.4144 -3.8596 -2.9450 19 6 -4.8188 -3.2850 -2.7488 20 6 -5.6278 -3.4651 -4.0348 21 7 -6.9760 -2.9128 -3.8467 22 6 -6.9138 -1.5151 -3.3481 23 6 -8.3093 -0.9472 -3.7097 24 6 -8.6033 -1.5993 -5.0802 25 6 -7.7073 -2.8507 -5.1307 26 6 -0.4567 -4.0064 -0.4467 27 1 -0.8793 -4.4668 0.4464 28 6 -0.1227 -2.5209 -0.2260 29 1 -0.4850 0.8400 -0.0004 30 1 2.8161 -3.6562 -0.9335 31 1 2.2677 -4.0566 0.7170 32 1 1.1956 -3.5383 -2.7123 33 1 1.5124 -5.3007 -2.8495 34 1 -0.8737 -4.3291 -3.6694 35 1 -0.8267 -5.8465 -2.7226 36 1 -2.9187 -3.3357 -3.7620 37 1 -3.4859 -4.9207 -3.1840 38 1 -5.3148 -3.8086 -1.9315 39 1 -4.7470 -2.2238 -2.5099 40 1 -5.1320 -2.9418 -4.8523 41 1 -5.6995 -4.5263 -4.2733 42 1 -6.7592 -1.4979 -2.2693 43 1 -6.1280 -0.9589 -3.8592 44 1 -8.2726 0.1385 -3.7990 45 1 -9.0519 -1.2497 -2.9714 46 1 -8.3436 -0.9152 -5.8881 47 1 -9.6535 -1.8830 -5.1484 48 1 -7.0009 -2.7686 -5.9567 49 1 -8.3192 -3.7444 -5.2531 50 1 -0.5062 -1.9301 -1.0579 51 1 -0.5713 -2.1777 0.7063 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190325118.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:29 Heat of formation + Delta-G solvation = -26.073137 kcal Electronic energy + Delta-G solvation = -28072.291081 eV Core-core repulsion = 24391.910539 eV Total energy + Delta-G solvation = -3680.380542 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 321.216 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.50812 -40.02084 -39.32348 -36.59559 -35.35028 -34.09422 -32.28175 -31.93746 -30.42882 -29.80728 -28.50680 -27.06729 -26.27872 -24.05253 -23.23086 -22.30704 -21.71966 -21.32072 -20.83242 -19.93584 -18.93930 -18.07632 -17.23842 -17.11711 -16.91479 -16.66760 -16.23664 -16.06101 -15.50884 -15.26047 -15.02703 -14.86208 -14.36708 -14.31373 -13.96541 -13.78425 -13.60873 -13.38947 -13.33036 -13.14124 -12.93686 -12.75461 -12.72332 -12.60082 -12.39824 -12.26271 -12.12989 -12.12163 -11.97501 -11.88955 -11.78331 -11.65307 -11.49864 -11.43861 -11.41698 -10.83073 -10.69753 -9.57831 -9.39459 -8.91803 -7.87056 -5.25345 1.40353 1.43173 1.52744 1.72412 2.05858 2.46222 3.02378 3.29218 3.37549 3.67253 3.68720 3.74510 3.77050 3.85209 3.97789 4.01327 4.05996 4.18466 4.32562 4.34270 4.37437 4.45946 4.50058 4.52757 4.56074 4.62346 4.67153 4.70062 4.74254 4.76729 4.88960 4.89835 4.95354 4.96895 5.05196 5.09881 5.12667 5.19645 5.21938 5.23158 5.28594 5.33108 5.42979 5.52529 5.60191 5.79349 5.91720 6.10048 6.16621 6.68177 7.04776 7.28951 7.76545 8.38104 9.21162 Molecular weight = 321.22amu Principal moments of inertia in cm(-1) A = 0.012928 B = 0.003125 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.283494 B = 8958.968709 C =10571.018465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.071 4.071 3 Si 0.980 3.020 4 H -0.285 1.285 5 H -0.300 1.300 6 H -0.261 1.261 7 C -0.243 4.243 8 H 0.090 0.910 9 N -0.623 5.623 10 C 0.135 3.865 11 C -0.092 4.092 12 H 0.134 0.866 13 C -0.115 4.115 14 C 0.100 3.900 15 N -0.612 5.612 16 C 0.509 3.491 17 O -0.592 6.592 18 C -0.116 4.116 19 C -0.097 4.097 20 C 0.056 3.944 21 N -0.534 5.534 22 C 0.028 3.972 23 C -0.124 4.124 24 C -0.127 4.127 25 C 0.033 3.967 26 C 0.114 3.886 27 H 0.069 0.931 28 C 0.202 3.798 29 H 0.242 0.758 30 H 0.054 0.946 31 H 0.020 0.980 32 H 0.048 0.952 33 H 0.125 0.875 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.130 0.870 38 H 0.058 0.942 39 H 0.040 0.960 40 H 0.043 0.957 41 H 0.097 0.903 42 H 0.063 0.937 43 H 0.038 0.962 44 H 0.078 0.922 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.084 0.916 48 H 0.050 0.950 49 H 0.087 0.913 50 H 0.011 0.989 51 H -0.024 1.024 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.073 -13.399 -15.403 22.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.264 4.264 3 Si 0.808 3.192 4 H -0.212 1.212 5 H -0.227 1.227 6 H -0.185 1.185 7 C -0.372 4.372 8 H 0.107 0.893 9 N -0.350 5.350 10 C 0.010 3.990 11 C -0.111 4.111 12 H 0.151 0.849 13 C -0.152 4.152 14 C -0.021 4.021 15 N -0.345 5.345 16 C 0.300 3.700 17 O -0.473 6.473 18 C -0.156 4.156 19 C -0.136 4.136 20 C -0.072 4.072 21 N -0.258 5.258 22 C -0.100 4.100 23 C -0.162 4.162 24 C -0.165 4.165 25 C -0.095 4.095 26 C 0.009 3.991 27 H 0.087 0.913 28 C 0.075 3.925 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.038 0.962 32 H 0.067 0.933 33 H 0.143 0.857 34 H 0.109 0.891 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.148 0.852 38 H 0.077 0.923 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.115 0.885 42 H 0.082 0.918 43 H 0.056 0.944 44 H 0.097 0.903 45 H 0.091 0.909 46 H 0.093 0.907 47 H 0.102 0.898 48 H 0.068 0.932 49 H 0.105 0.895 50 H 0.030 0.970 51 H -0.006 1.006 Dipole moment (debyes) X Y Z Total from point charges -10.703 -13.259 -14.541 22.401 hybrid contribution 0.739 2.214 0.361 2.361 sum -9.964 -11.045 -14.181 20.552 Atomic orbital electron populations 1.70342 1.06669 1.24931 1.57948 1.25802 0.96431 1.01551 1.02592 0.85035 0.77921 0.78926 0.77342 1.21160 1.22698 1.18530 1.19498 0.91794 0.83699 1.42197 0.89253 1.44468 1.01931 1.02733 1.85861 1.21362 0.95557 0.84360 0.97729 1.23013 0.91053 0.99733 0.97311 0.84852 1.22750 0.96206 1.02779 0.93506 1.22647 0.90900 0.98829 0.89700 1.48743 1.11464 1.59177 1.15130 1.21273 0.80945 0.76881 0.90900 1.90711 1.70832 1.44853 1.40894 1.21576 0.94717 1.05581 0.93764 1.21266 0.93625 1.00416 0.98250 1.22273 0.87786 1.01596 0.95518 1.64788 1.16161 1.19087 1.25800 1.23229 0.97667 0.88927 1.00128 1.22497 0.95701 1.00274 0.97718 1.22407 1.00769 0.96288 0.97082 1.22956 0.96992 0.99527 0.89991 1.22547 0.91036 0.96193 0.89290 0.91285 1.20785 0.83947 0.91349 0.96403 0.94921 0.92793 0.96222 0.93342 0.85731 0.89117 0.87457 0.87616 0.85182 0.92328 0.94154 0.93854 0.88507 0.91812 0.94372 0.90345 0.90892 0.90721 0.89774 0.93151 0.89502 0.97038 1.00576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.49 10.28 21.65 0.22 -62.26 16 2 C -0.07 -4.28 5.47 84.86 0.46 -3.81 16 3 Si 0.98 47.87 29.56 68.60 2.03 49.90 16 4 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 5 H -0.30 -14.95 7.11 99.48 0.71 -14.25 16 6 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.24 -14.11 10.23 84.03 0.86 -13.25 16 8 H 0.09 4.85 7.84 -2.91 -0.02 4.83 16 9 N -0.62 -33.32 3.37 -698.95 -2.36 -35.68 16 10 C 0.13 5.32 6.50 86.53 0.56 5.88 16 11 C -0.09 -2.79 3.97 -9.23 -0.04 -2.82 16 12 H 0.13 2.95 8.14 -2.39 -0.02 2.93 16 13 C -0.11 -2.83 6.32 31.87 0.20 -2.63 16 14 C 0.10 2.19 6.66 86.88 0.58 2.77 16 15 N -0.61 -20.96 2.83 -784.25 -2.22 -23.18 16 16 C 0.51 18.94 7.56 87.66 0.66 19.60 16 17 O -0.59 -29.16 16.07 -3.03 -0.05 -29.20 16 18 C -0.12 -2.82 4.71 29.85 0.14 -2.68 16 19 C -0.10 -2.60 4.16 30.59 0.13 -2.47 16 20 C 0.06 1.12 5.03 86.30 0.43 1.56 16 21 N -0.53 -11.59 5.40 -883.05 -4.76 -16.35 16 22 C 0.03 0.67 5.10 86.65 0.44 1.11 16 23 C -0.12 -2.24 7.06 31.80 0.22 -2.01 16 24 C -0.13 -1.85 6.93 31.47 0.22 -1.63 16 25 C 0.03 0.53 6.70 86.44 0.58 1.11 16 26 C 0.11 4.63 3.81 45.91 0.17 4.80 16 27 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 28 C 0.20 11.09 4.63 86.67 0.40 11.49 16 29 H 0.24 15.63 8.31 -92.71 -0.77 14.86 16 30 H 0.05 1.97 7.95 -2.39 -0.02 1.95 16 31 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.05 1.59 7.93 -2.39 -0.02 1.57 16 33 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.09 1.66 7.49 -2.39 -0.02 1.64 16 35 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.11 2.24 7.85 -2.39 -0.02 2.22 16 37 H 0.13 2.10 8.14 -2.38 -0.02 2.08 16 38 H 0.06 1.78 8.10 -2.39 -0.02 1.76 16 39 H 0.04 1.33 6.75 -2.38 -0.02 1.31 16 40 H 0.04 0.80 7.81 -2.39 -0.02 0.78 16 41 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 42 H 0.06 1.76 7.66 -2.39 -0.02 1.74 16 43 H 0.04 0.93 8.00 -2.39 -0.02 0.91 16 44 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.05 0.75 7.57 -2.39 -0.02 0.73 16 49 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 50 H 0.01 0.72 6.83 -2.39 -0.02 0.70 16 51 H -0.02 -1.60 7.58 -2.39 -0.02 -1.62 16 Total: -1.00 -85.04 389.07 -0.23 -85.27 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.88 Total: 14.50 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: 6.03 Total: 17.01 kcal Atomic # 7 Polarization: -128.35 SS G_CDS: -9.12 Total: -137.47 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.05 Total: -29.20 kcal Atomic # 14 Polarization: 47.87 SS G_CDS: 2.03 Total: 49.90 kcal Total: -85.04 -0.23 -85.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190325118.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.192 kcal (2) G-P(sol) polarization free energy of solvation -85.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds