Wall clock time and date at job start Fri Apr 10 2020 18:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39777 * 125.84223 * 2 1 4 4 C 1.36171 * 107.81640 * 180.02562 * 3 2 1 5 5 N 1.39202 * 126.22071 * 180.02562 * 4 3 2 6 6 S 1.65605 * 120.00130 * 359.97438 * 5 4 3 7 7 O 1.42100 * 106.40382 * 178.54170 * 6 5 4 8 8 O 1.42102 * 106.39763 * 311.45510 * 6 5 4 9 9 C 1.76190 * 107.21819 * 64.99715 * 6 5 4 10 10 H 1.08000 * 120.00719 * 0.02562 * 9 6 5 11 11 C 1.37881 * 119.99961 * 179.97438 * 9 6 5 12 12 N 1.31516 * 119.99892 * 0.02562 * 11 9 6 13 13 Si 1.86803 * 120.00126 * 180.02562 * 11 9 6 14 14 H 1.48498 * 109.47066 * 60.00052 * 13 11 9 15 15 H 1.48501 * 109.46968 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46956 * 299.99963 * 13 11 9 17 17 N 1.35248 * 107.55453 * 0.02562 * 4 3 2 18 18 C 1.46506 * 126.03722 * 179.97438 * 17 4 3 19 19 C 1.50699 * 109.46928 * 90.00330 * 18 17 4 20 20 C 1.38677 * 120.41779 * 89.99613 * 19 18 17 21 21 C 1.38627 * 118.41947 * 179.97438 * 20 19 18 22 22 C 1.38231 * 119.16189 * 0.02562 * 21 20 19 23 23 N 1.31856 * 120.76195 * 359.97438 * 22 21 20 24 24 C 1.31881 * 121.72603 * 359.70358 * 23 22 21 25 25 N 1.30840 * 125.83761 * 180.38053 * 2 1 3 26 26 H 1.09001 * 109.47558 * 89.99217 * 1 2 3 27 27 H 1.08999 * 109.47252 * 209.99771 * 1 2 3 28 28 H 1.09007 * 109.46928 * 329.99686 * 1 2 3 29 29 H 1.08003 * 126.08959 * 0.02562 * 3 2 1 30 30 H 0.97005 * 120.00320 * 179.97438 * 5 4 3 31 31 H 0.97001 * 120.00225 * 179.97438 * 12 11 9 32 32 H 1.09004 * 109.47073 * 210.00158 * 18 17 4 33 33 H 1.09000 * 109.47212 * 330.00240 * 18 17 4 34 34 H 1.07995 * 120.79121 * 359.97438 * 20 19 18 35 35 H 1.07998 * 120.42274 * 180.02562 * 21 20 19 36 36 H 1.08002 * 119.61887 * 179.97438 * 22 21 20 37 37 H 1.07999 * 119.62127 * 180.31766 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3254 1.1331 0.0000 4 6 3.6203 0.7117 -0.0006 5 7 4.7500 1.5251 -0.0003 6 16 4.5840 3.1728 0.0003 7 8 5.8996 3.7086 0.0352 8 8 3.6459 3.4818 -1.0214 9 6 3.8239 3.6199 1.5256 10 1 3.5644 2.8564 2.2440 11 6 3.5614 4.9448 1.8027 12 7 3.8778 5.8747 0.9282 13 14 2.7562 5.4190 3.4202 14 1 3.6160 4.9801 4.5486 15 1 2.5828 6.8929 3.4735 16 1 1.4290 4.7609 3.5241 17 7 3.6092 -0.6407 -0.0015 18 6 4.7868 -1.5124 -0.0029 19 6 5.1914 -1.8122 1.4174 20 6 4.6684 -2.9131 2.0790 21 6 5.0695 -3.1503 3.3846 22 6 5.9707 -2.2874 3.9796 23 7 6.4475 -1.2500 3.3199 24 6 6.0930 -0.9973 2.0750 25 7 2.2730 -1.0607 -0.0070 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.9905 2.1599 0.0004 30 1 5.6345 1.1267 -0.0004 31 1 3.6928 6.8068 1.1229 32 1 4.5490 -2.4435 -0.5173 33 1 5.6080 -1.0128 -0.5169 34 1 3.9653 -3.5701 1.5887 35 1 4.6829 -3.9984 3.9300 36 1 6.2879 -2.4649 4.9966 37 1 6.5086 -0.1408 1.5650 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192935340.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:38 Heat of formation + Delta-G solvation = 23.427935 kcal Electronic energy + Delta-G solvation = -25138.658626 eV Core-core repulsion = 21430.252288 eV Total energy + Delta-G solvation = -3708.406338 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.089 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.05871 -40.10392 -35.52026 -35.11271 -34.36482 -34.18299 -33.16078 -32.30740 -31.43543 -28.77190 -28.02860 -26.23856 -25.50538 -23.76123 -22.35457 -20.83005 -19.97491 -18.82599 -17.67838 -17.55883 -16.99165 -16.46844 -16.21531 -15.90351 -14.97777 -14.96863 -14.54231 -14.09410 -13.93462 -13.80570 -13.53976 -13.24550 -13.17576 -12.90728 -12.61184 -12.24144 -12.09906 -11.96284 -11.78601 -11.39901 -11.22989 -10.97647 -10.88768 -10.64632 -10.50377 -10.41100 -10.10971 -9.98559 -9.60998 -9.29764 -9.26827 -8.97545 -8.49838 -7.61508 -6.78674 -5.41442 0.82936 1.12743 1.85107 2.30242 2.80535 3.07655 3.11476 3.17963 3.29087 3.71809 3.97946 4.21769 4.31310 4.40391 4.55011 4.57307 4.74081 4.79313 4.97257 5.15349 5.24540 5.37438 5.43944 5.48023 5.58227 5.86078 5.88863 5.91674 5.94258 6.00722 6.09460 6.22169 6.41036 6.50524 6.79765 7.01651 7.20262 7.25770 7.64938 7.83089 7.89450 8.12794 8.80750 10.15905 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.011673 B = 0.005262 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.187810 B = 5320.125367 C = 5964.038378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.099 3.901 3 C -0.302 4.302 4 C 0.360 3.640 5 N -1.045 6.045 6 S 2.703 3.297 7 O -0.990 6.990 8 O -0.980 6.980 9 C -1.008 5.008 10 H 0.106 0.894 11 C 0.136 3.864 12 N -0.844 5.844 13 Si 0.923 3.077 14 H -0.264 1.264 15 H -0.276 1.276 16 H -0.261 1.261 17 N -0.392 5.392 18 C 0.181 3.819 19 C -0.167 4.167 20 C -0.046 4.046 21 C -0.178 4.178 22 C 0.104 3.896 23 N -0.481 5.481 24 C 0.121 3.879 25 N -0.310 5.310 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.170 0.830 30 H 0.408 0.592 31 H 0.293 0.707 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.156 0.844 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.762 -16.326 2.204 16.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.068 4.068 3 C -0.334 4.334 4 C 0.138 3.862 5 N -0.787 5.787 6 S 2.803 3.197 7 O -0.980 6.980 8 O -0.970 6.970 9 C -1.142 5.142 10 H 0.124 0.876 11 C -0.083 4.083 12 N -0.474 5.474 13 Si 0.746 3.254 14 H -0.188 1.188 15 H -0.200 1.200 16 H -0.186 1.186 17 N -0.180 5.180 18 C 0.059 3.941 19 C -0.170 4.170 20 C -0.072 4.072 21 C -0.198 4.198 22 C -0.053 4.053 23 N -0.189 5.189 24 C -0.037 4.037 25 N -0.134 5.134 26 H 0.094 0.906 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.187 0.813 30 H 0.240 0.760 31 H 0.104 0.896 32 H 0.125 0.875 33 H 0.116 0.884 34 H 0.155 0.845 35 H 0.154 0.846 36 H 0.174 0.826 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.177 -16.223 1.783 16.322 hybrid contribution -0.572 0.283 1.046 1.225 sum -0.394 -15.940 2.828 16.194 Atomic orbital electron populations 1.20158 0.86829 1.03057 1.02796 1.21973 0.96611 0.90331 0.97844 1.21177 0.88832 1.01609 1.21832 1.17632 0.88526 0.82241 0.97839 1.54269 1.10021 1.27555 1.86901 1.01191 0.73948 0.67762 0.76794 1.93418 1.41552 1.73526 1.89486 1.93411 1.63758 1.79708 1.60119 1.30255 1.57831 1.00700 1.25432 0.87579 1.24718 0.90837 0.94428 0.98309 1.69871 1.39393 1.03123 1.34999 0.86150 0.80287 0.77747 0.81172 1.18829 1.20038 1.18574 1.48370 1.05321 1.02222 1.62070 1.20277 0.85246 0.95828 0.92770 1.21126 1.00018 0.97679 0.98218 1.21500 0.95963 0.95571 0.94187 1.22156 0.99873 1.01744 0.95988 1.22871 0.92935 0.89752 0.99758 1.67748 1.24798 1.18118 1.08196 1.22736 0.93266 0.97136 0.90537 1.77220 0.84765 1.21686 1.29682 0.90602 0.91360 0.90178 0.81309 0.76041 0.89607 0.87470 0.88422 0.84494 0.84630 0.82639 0.82942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.92 10.44 36.00 0.38 -0.54 16 2 C 0.10 1.73 7.21 -82.44 -0.59 1.14 16 3 C -0.30 -6.21 9.21 -39.75 -0.37 -6.57 16 4 C 0.36 7.04 7.58 -153.41 -1.16 5.88 16 5 N -1.05 -20.71 5.87 31.10 0.18 -20.53 16 6 S 2.70 69.22 4.58 -107.50 -0.49 68.72 16 7 O -0.99 -27.69 18.02 -57.17 -1.03 -28.72 16 8 O -0.98 -27.39 16.20 -57.17 -0.93 -28.31 16 9 C -1.01 -26.91 8.96 30.60 0.27 -26.63 16 10 H 0.11 2.68 7.81 -52.49 -0.41 2.27 16 11 C 0.14 3.67 5.46 -17.82 -0.10 3.57 16 12 N -0.84 -23.97 13.19 55.43 0.73 -23.24 16 13 Si 0.92 20.31 29.54 -169.99 -5.02 15.29 16 14 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 15 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 16 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 17 N -0.39 -6.49 3.60 -61.63 -0.22 -6.71 16 18 C 0.18 2.20 6.40 -5.19 -0.03 2.16 16 19 C -0.17 -2.08 5.48 -104.48 -0.57 -2.65 16 20 C -0.05 -0.50 9.86 -39.28 -0.39 -0.89 16 21 C -0.18 -1.78 10.11 -39.44 -0.40 -2.18 16 22 C 0.10 1.19 11.18 -17.54 -0.20 0.99 16 23 N -0.48 -6.93 10.36 -13.25 -0.14 -7.07 16 24 C 0.12 1.68 10.86 -17.55 -0.19 1.49 16 25 N -0.31 -5.32 12.56 33.65 0.42 -4.90 16 26 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.08 0.99 8.14 -51.92 -0.42 0.57 16 29 H 0.17 3.80 6.48 -52.48 -0.34 3.46 16 30 H 0.41 6.57 7.32 -34.47 -0.25 6.32 16 31 H 0.29 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.11 1.06 8.10 -51.93 -0.42 0.64 16 33 H 0.10 0.99 7.45 -51.93 -0.39 0.60 16 34 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 36 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.15 1.99 7.29 -52.49 -0.38 1.61 16 LS Contribution 339.35 15.07 5.11 5.11 Total: -1.00 -36.08 339.35 -8.59 -44.67 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -3.86 Total: 9.90 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: -3.35 Total: -24.22 kcal Atomic # 7 Polarization: -63.42 SS G_CDS: 0.98 Total: -62.44 kcal Atomic # 8 Polarization: -55.08 SS G_CDS: -1.96 Total: -57.03 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: 69.22 SS G_CDS: -0.49 Total: 68.72 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -36.08 -8.59 -44.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192935340.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.096 kcal (2) G-P(sol) polarization free energy of solvation -36.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds