Wall clock time and date at job start Fri Apr 10 2020 18:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39777 * 125.84223 * 2 1 4 4 C 1.36171 * 107.81640 * 180.02562 * 3 2 1 5 5 N 1.39202 * 126.22071 * 180.02562 * 4 3 2 6 6 S 1.65605 * 120.00130 * 359.97438 * 5 4 3 7 7 O 1.42100 * 106.40382 * 178.54170 * 6 5 4 8 8 O 1.42102 * 106.39763 * 311.45510 * 6 5 4 9 9 C 1.76190 * 107.21819 * 64.99715 * 6 5 4 10 10 H 1.08000 * 120.00719 * 0.02562 * 9 6 5 11 11 C 1.37881 * 119.99961 * 179.97438 * 9 6 5 12 12 N 1.31516 * 119.99892 * 0.02562 * 11 9 6 13 13 Si 1.86803 * 120.00126 * 180.02562 * 11 9 6 14 14 H 1.48498 * 109.47066 * 60.00052 * 13 11 9 15 15 H 1.48501 * 109.46968 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46956 * 299.99963 * 13 11 9 17 17 N 1.35248 * 107.55453 * 0.02562 * 4 3 2 18 18 C 1.46506 * 126.03722 * 179.97438 * 17 4 3 19 19 C 1.50699 * 109.46928 * 90.00330 * 18 17 4 20 20 C 1.38677 * 120.41779 * 89.99613 * 19 18 17 21 21 C 1.38627 * 118.41947 * 179.97438 * 20 19 18 22 22 C 1.38231 * 119.16189 * 0.02562 * 21 20 19 23 23 N 1.31856 * 120.76195 * 359.97438 * 22 21 20 24 24 C 1.31881 * 121.72603 * 359.70358 * 23 22 21 25 25 N 1.30840 * 125.83761 * 180.38053 * 2 1 3 26 26 H 1.09001 * 109.47558 * 89.99217 * 1 2 3 27 27 H 1.08999 * 109.47252 * 209.99771 * 1 2 3 28 28 H 1.09007 * 109.46928 * 329.99686 * 1 2 3 29 29 H 1.08003 * 126.08959 * 0.02562 * 3 2 1 30 30 H 0.97005 * 120.00320 * 179.97438 * 5 4 3 31 31 H 0.97001 * 120.00225 * 179.97438 * 12 11 9 32 32 H 1.09004 * 109.47073 * 210.00158 * 18 17 4 33 33 H 1.09000 * 109.47212 * 330.00240 * 18 17 4 34 34 H 1.07995 * 120.79121 * 359.97438 * 20 19 18 35 35 H 1.07998 * 120.42274 * 180.02562 * 21 20 19 36 36 H 1.08002 * 119.61887 * 179.97438 * 22 21 20 37 37 H 1.07999 * 119.62127 * 180.31766 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3254 1.1331 0.0000 4 6 3.6203 0.7117 -0.0006 5 7 4.7500 1.5251 -0.0003 6 16 4.5840 3.1728 0.0003 7 8 5.8996 3.7086 0.0352 8 8 3.6459 3.4818 -1.0214 9 6 3.8239 3.6199 1.5256 10 1 3.5644 2.8564 2.2440 11 6 3.5614 4.9448 1.8027 12 7 3.8778 5.8747 0.9282 13 14 2.7562 5.4190 3.4202 14 1 3.6160 4.9801 4.5486 15 1 2.5828 6.8929 3.4735 16 1 1.4290 4.7609 3.5241 17 7 3.6092 -0.6407 -0.0015 18 6 4.7868 -1.5124 -0.0029 19 6 5.1914 -1.8122 1.4174 20 6 4.6684 -2.9131 2.0790 21 6 5.0695 -3.1503 3.3846 22 6 5.9707 -2.2874 3.9796 23 7 6.4475 -1.2500 3.3199 24 6 6.0930 -0.9973 2.0750 25 7 2.2730 -1.0607 -0.0070 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.9905 2.1599 0.0004 30 1 5.6345 1.1267 -0.0004 31 1 3.6928 6.8068 1.1229 32 1 4.5490 -2.4435 -0.5173 33 1 5.6080 -1.0128 -0.5169 34 1 3.9653 -3.5701 1.5887 35 1 4.6829 -3.9984 3.9300 36 1 6.2879 -2.4649 4.9966 37 1 6.5086 -0.1408 1.5650 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192935340.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:37 Heat of formation + Delta-G solvation = -3.418439 kcal Electronic energy + Delta-G solvation = -25139.822772 eV Core-core repulsion = 21430.252288 eV Total energy + Delta-G solvation = -3709.570484 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.089 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.38945 -41.06459 -37.64931 -36.53436 -36.35455 -35.60551 -35.20558 -33.26971 -32.47224 -29.95378 -29.39282 -28.31557 -26.60820 -24.66562 -23.37364 -22.32623 -21.48149 -20.68297 -19.49301 -18.83700 -18.20430 -17.99838 -17.40886 -17.07842 -16.88541 -16.33691 -16.03972 -15.80486 -15.56475 -14.97891 -14.53438 -14.50066 -14.07136 -14.05549 -14.02663 -13.76059 -13.47349 -13.27349 -13.16702 -13.03249 -12.91885 -12.78389 -12.67989 -12.52673 -12.34288 -12.28470 -11.54675 -11.26360 -11.03052 -10.89478 -10.54189 -10.17365 -9.78470 -9.17114 -8.80132 -7.53619 -0.16154 -0.01405 0.25684 0.88375 1.32053 1.34856 1.47370 1.56883 1.82489 2.17415 2.52050 2.55154 2.82150 3.37720 3.39292 3.50940 3.61959 3.84538 3.89699 3.92671 4.02850 4.17480 4.27900 4.38945 4.52781 4.56849 4.62170 4.71942 4.91831 4.94271 5.08026 5.12330 5.18824 5.22113 5.26887 5.54133 5.66758 5.82173 5.84885 6.18108 6.72844 6.74317 6.92571 8.16263 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.011673 B = 0.005262 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.187810 B = 5320.125367 C = 5964.038378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.096 3.904 3 C -0.334 4.334 4 C 0.345 3.655 5 N -1.033 6.033 6 S 2.719 3.281 7 O -1.022 7.022 8 O -1.012 7.012 9 C -1.024 5.024 10 H 0.113 0.887 11 C 0.080 3.920 12 N -0.887 5.887 13 Si 0.985 3.015 14 H -0.256 1.256 15 H -0.259 1.259 16 H -0.249 1.249 17 N -0.381 5.381 18 C 0.170 3.830 19 C -0.173 4.173 20 C -0.049 4.049 21 C -0.167 4.167 22 C 0.093 3.907 23 N -0.517 5.517 24 C 0.096 3.904 25 N -0.302 5.302 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.141 0.859 30 H 0.423 0.577 31 H 0.302 0.698 32 H 0.136 0.864 33 H 0.113 0.887 34 H 0.159 0.841 35 H 0.172 0.828 36 H 0.182 0.818 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.981 -18.765 3.685 19.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.071 4.071 3 C -0.368 4.368 4 C 0.121 3.879 5 N -0.780 5.780 6 S 2.820 3.180 7 O -1.012 7.012 8 O -1.001 7.001 9 C -1.158 5.158 10 H 0.131 0.869 11 C -0.135 4.135 12 N -0.518 5.518 13 Si 0.803 3.197 14 H -0.180 1.180 15 H -0.182 1.182 16 H -0.172 1.172 17 N -0.168 5.168 18 C 0.050 3.950 19 C -0.176 4.176 20 C -0.076 4.076 21 C -0.187 4.187 22 C -0.064 4.064 23 N -0.225 5.225 24 C -0.061 4.061 25 N -0.126 5.126 26 H 0.110 0.890 27 H 0.108 0.892 28 H 0.101 0.899 29 H 0.159 0.841 30 H 0.259 0.741 31 H 0.112 0.888 32 H 0.154 0.846 33 H 0.131 0.869 34 H 0.176 0.824 35 H 0.189 0.811 36 H 0.199 0.801 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.014 -18.697 3.243 19.003 hybrid contribution -0.156 0.890 0.586 1.077 sum -1.170 -17.807 3.828 18.252 Atomic orbital electron populations 1.20321 0.83945 1.04285 1.04241 1.22510 0.98472 0.89034 0.97072 1.21200 0.90258 1.01457 1.23843 1.17613 0.87812 0.83726 0.98739 1.53443 1.11339 1.26157 1.87086 1.00373 0.72831 0.68511 0.76313 1.93368 1.42721 1.75327 1.89739 1.93364 1.64404 1.81197 1.61171 1.30516 1.57998 1.01406 1.25872 0.86868 1.25865 0.91125 0.94282 1.02181 1.69943 1.40735 1.03950 1.37195 0.85230 0.79687 0.78508 0.76259 1.18039 1.18234 1.17249 1.48668 1.06252 1.01289 1.60593 1.20742 0.84280 0.96538 0.93476 1.21099 1.00094 0.98221 0.98180 1.21850 0.95870 0.95173 0.94669 1.22543 0.98456 1.02001 0.95655 1.23411 0.93002 0.89185 1.00808 1.67706 1.26228 1.19880 1.08719 1.22780 0.94565 0.97793 0.90992 1.77181 0.84933 1.21387 1.29072 0.88972 0.89182 0.89872 0.84105 0.74114 0.88751 0.84566 0.86868 0.82382 0.81057 0.80140 0.83689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.69 10.44 71.24 0.74 -0.95 16 2 C 0.10 3.26 7.21 43.08 0.31 3.57 16 3 C -0.33 -13.95 9.21 22.16 0.20 -13.75 16 4 C 0.34 13.52 7.58 131.43 1.00 14.52 16 5 N -1.03 -41.87 5.87 -55.51 -0.33 -42.19 16 6 S 2.72 144.01 4.58 -56.49 -0.26 143.75 16 7 O -1.02 -59.16 18.02 -128.00 -2.31 -61.47 16 8 O -1.01 -58.85 16.20 -128.00 -2.07 -60.93 16 9 C -1.02 -55.82 8.96 67.74 0.61 -55.21 16 10 H 0.11 5.82 7.81 -2.91 -0.02 5.79 16 11 C 0.08 4.35 5.46 84.66 0.46 4.81 16 12 N -0.89 -51.45 13.19 21.45 0.28 -51.16 16 13 Si 0.99 41.12 29.54 68.60 2.03 43.15 16 14 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 15 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 16 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 17 N -0.38 -12.10 3.60 -348.90 -1.26 -13.36 16 18 C 0.17 3.81 6.40 85.63 0.55 4.36 16 19 C -0.17 -4.02 5.48 -19.77 -0.11 -4.13 16 20 C -0.05 -0.93 9.86 22.47 0.22 -0.71 16 21 C -0.17 -2.79 10.11 22.36 0.23 -2.57 16 22 C 0.09 1.93 11.18 84.69 0.95 2.88 16 23 N -0.52 -14.62 10.36 -195.84 -2.03 -16.65 16 24 C 0.10 2.63 10.86 84.67 0.92 3.55 16 25 N -0.30 -9.78 12.56 -47.44 -0.60 -10.38 16 26 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 29 H 0.14 6.65 6.48 -2.91 -0.02 6.63 16 30 H 0.42 13.98 7.32 -96.74 -0.71 13.27 16 31 H 0.30 15.72 8.31 -92.71 -0.77 14.95 16 32 H 0.14 2.26 8.10 -2.38 -0.02 2.24 16 33 H 0.11 2.14 7.45 -2.39 -0.02 2.13 16 34 H 0.16 2.29 8.06 -2.91 -0.02 2.26 16 35 H 0.17 1.59 8.06 -2.91 -0.02 1.56 16 36 H 0.18 2.62 8.06 -2.91 -0.02 2.59 16 37 H 0.15 3.94 7.29 -2.91 -0.02 3.92 16 Total: -1.00 -79.83 339.35 -0.05 -79.88 By element: Atomic # 1 Polarization: 32.57 SS G_CDS: 0.41 Total: 32.99 kcal Atomic # 6 Polarization: -49.70 SS G_CDS: 6.08 Total: -43.62 kcal Atomic # 7 Polarization: -129.82 SS G_CDS: -3.93 Total: -133.75 kcal Atomic # 8 Polarization: -118.02 SS G_CDS: -4.38 Total: -122.40 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Atomic # 16 Polarization: 144.01 SS G_CDS: -0.26 Total: 143.75 kcal Total: -79.83 -0.05 -79.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192935340.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.460 kcal (2) G-P(sol) polarization free energy of solvation -79.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds