Wall clock time and date at job start Fri Apr 10 2020 18:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39776 * 126.09194 * 2 1 4 4 N 1.30836 * 108.32173 * 180.02562 * 3 2 1 5 5 N 1.40063 * 108.39125 * 0.02562 * 4 3 2 6 6 C 1.46506 * 126.04153 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47193 * 90.02064 * 6 5 4 8 8 C 1.38648 * 120.79240 * 270.29616 * 7 6 5 9 9 C 1.38208 * 119.16332 * 180.21900 * 8 7 6 10 10 N 1.31871 * 120.75945 * 359.48306 * 9 8 7 11 11 C 1.31867 * 121.73057 * 0.26912 * 10 9 8 12 12 C 1.38197 * 120.76320 * 359.97438 * 11 10 9 13 13 C 1.35246 * 107.91458 * 0.25706 * 5 4 3 14 14 N 1.39204 * 126.22063 * 179.73872 * 13 5 4 15 15 S 1.65599 * 119.99915 * 239.23062 * 14 13 5 16 16 O 1.42101 * 106.40244 * 175.85964 * 15 14 13 17 17 O 1.42104 * 106.40354 * 308.77811 * 15 14 13 18 18 C 1.76193 * 107.21976 * 62.32088 * 15 14 13 19 19 H 1.08006 * 119.99678 * 359.97438 * 18 15 14 20 20 C 1.37878 * 120.00253 * 179.97438 * 18 15 14 21 21 N 1.31519 * 119.99942 * 180.02562 * 20 18 15 22 22 Si 1.86797 * 119.99955 * 359.97438 * 20 18 15 23 23 H 1.48496 * 109.47010 * 89.99938 * 22 20 18 24 24 H 1.48502 * 109.47207 * 210.00013 * 22 20 18 25 25 H 1.48499 * 109.47273 * 329.99908 * 22 20 18 26 26 H 1.09000 * 109.47254 * 85.40878 * 1 2 3 27 27 H 1.08994 * 109.47043 * 205.41164 * 1 2 3 28 28 H 1.09003 * 109.47491 * 325.41187 * 1 2 3 29 29 H 1.08001 * 125.83748 * 0.02562 * 3 2 1 30 30 H 1.08995 * 109.47236 * 330.01736 * 6 5 4 31 31 H 1.09001 * 109.46827 * 210.01859 * 6 5 4 32 32 H 1.08004 * 120.41840 * 359.97438 * 8 7 6 33 33 H 1.08000 * 119.62027 * 179.75219 * 9 8 7 34 34 H 1.08003 * 119.61408 * 180.02562 * 11 10 9 35 35 H 1.08008 * 120.41850 * 180.02562 * 12 11 10 36 36 H 0.96996 * 120.00239 * 59.23741 * 14 13 5 37 37 H 0.96999 * 119.99505 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3304 1.1295 0.0000 4 7 3.5763 0.7302 -0.0006 5 7 3.5915 -0.6704 -0.0015 6 6 4.7854 -1.5195 -0.0018 7 6 5.1941 -1.8120 1.4188 8 6 6.0722 -0.9759 2.0913 9 6 6.4279 -1.2787 3.3920 10 7 5.9345 -2.3421 3.9960 11 6 5.0934 -3.1565 3.3892 12 6 4.6962 -2.9204 2.0868 13 6 2.3092 -1.1003 -0.0073 14 7 1.8863 -2.4265 -0.0152 15 16 0.9393 -2.9863 -1.2530 16 8 0.7625 -4.3777 -1.0254 17 8 -0.1442 -2.0746 -1.3732 18 6 1.8793 -2.8402 -2.7361 19 1 2.8819 -2.4401 -2.7027 20 6 1.3349 -3.2368 -3.9392 21 7 2.0368 -3.1282 -5.0461 22 14 -0.3989 -3.9295 -3.9968 23 1 -1.3671 -2.8234 -4.2069 24 1 -0.5069 -4.9010 -5.1147 25 1 -0.7010 -4.6149 -2.7145 26 1 -0.3634 0.0823 -1.0244 27 1 -0.3633 -0.9282 0.4410 28 1 -0.3634 0.8460 0.5834 29 1 1.9954 2.1562 0.0004 30 1 5.5975 -1.0043 -0.5148 31 1 4.5658 -2.4548 -0.5167 32 1 6.4763 -0.1011 1.6034 33 1 7.1145 -0.6347 3.9214 34 1 4.7099 -4.0175 3.9165 35 1 4.0067 -3.5909 1.5953 36 1 2.1463 -3.0228 0.7043 37 1 1.6540 -3.4076 -5.8924 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192935563.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:26:45 Heat of formation + Delta-G solvation = 18.588077 kcal Electronic energy + Delta-G solvation = -25419.222083 eV Core-core repulsion = 21710.605873 eV Total energy + Delta-G solvation = -3708.616210 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.089 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.41462 -41.05977 -37.83128 -36.62276 -36.26305 -35.86921 -35.20889 -33.00035 -32.23188 -31.11337 -28.65464 -28.39838 -26.36379 -24.52005 -23.53512 -21.96753 -21.85712 -20.98504 -19.42580 -18.98437 -18.79604 -17.67809 -17.36646 -17.31179 -16.69597 -16.49150 -16.09085 -15.57928 -15.50151 -15.06350 -14.86700 -14.73451 -14.60470 -14.31194 -14.08747 -13.82332 -13.57217 -13.39274 -13.27884 -13.04362 -12.99340 -12.60074 -12.49535 -12.24439 -12.10450 -11.92514 -11.35374 -11.25646 -11.12028 -10.88773 -10.63438 -10.17071 -10.10871 -9.14117 -8.98989 -7.57765 -0.20589 -0.01914 0.11747 0.80802 1.05657 1.15447 1.20376 1.51565 1.81481 1.87535 2.31601 2.41470 2.82052 3.15211 3.37135 3.40532 3.53288 3.86241 3.92550 4.01839 4.08981 4.21160 4.28474 4.35114 4.41912 4.59328 4.68278 4.80587 4.87433 4.89293 5.15372 5.21842 5.28056 5.32431 5.50136 5.60253 5.67461 5.85395 5.93957 6.18252 6.49361 6.67514 6.91975 8.18318 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.016883 B = 0.004801 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.101657 B = 5831.053404 C = 6268.923776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.239 4.239 3 C 0.061 3.939 4 N -0.294 5.294 5 N -0.372 5.372 6 C 0.162 3.838 7 C -0.073 4.073 8 C -0.146 4.146 9 C 0.093 3.907 10 N -0.501 5.501 11 C 0.094 3.906 12 C -0.167 4.167 13 C 0.298 3.702 14 N -1.027 6.027 15 S 2.693 3.307 16 O -1.015 7.015 17 O -0.988 6.988 18 C -1.032 5.032 19 H 0.098 0.902 20 C 0.112 3.888 21 N -0.852 5.852 22 Si 0.827 3.173 23 H -0.234 1.234 24 H -0.224 1.224 25 H -0.226 1.226 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.082 0.918 29 H 0.222 0.778 30 H 0.122 0.878 31 H 0.102 0.898 32 H 0.153 0.847 33 H 0.184 0.816 34 H 0.181 0.819 35 H 0.141 0.859 36 H 0.426 0.574 37 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.860 4.690 12.877 14.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.254 4.254 3 C -0.125 4.125 4 N -0.116 5.116 5 N -0.159 5.159 6 C 0.041 3.959 7 C -0.082 4.082 8 C -0.166 4.166 9 C -0.063 4.063 10 N -0.211 5.211 11 C -0.063 4.063 12 C -0.187 4.187 13 C 0.077 3.923 14 N -0.781 5.781 15 S 2.793 3.207 16 O -1.005 7.005 17 O -0.978 6.978 18 C -1.165 5.165 19 H 0.117 0.883 20 C -0.105 4.105 21 N -0.482 5.482 22 Si 0.643 3.357 23 H -0.157 1.157 24 H -0.146 1.146 25 H -0.148 1.148 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.101 0.899 29 H 0.239 0.761 30 H 0.140 0.860 31 H 0.120 0.880 32 H 0.170 0.830 33 H 0.201 0.799 34 H 0.198 0.802 35 H 0.159 0.841 36 H 0.264 0.736 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.546 4.475 13.489 15.256 hybrid contribution -0.685 -0.743 -1.611 1.901 sum 4.861 3.731 11.879 13.366 Atomic orbital electron populations 1.20159 0.87665 1.01855 1.02338 1.20339 0.98200 0.91212 1.15675 1.24131 0.88913 1.00765 0.98662 1.77256 1.21671 0.87179 1.25526 1.48830 1.04062 1.04947 1.58081 1.20705 0.86318 0.94882 0.94029 1.20498 0.96604 0.95399 0.95739 1.22290 0.97818 1.00141 0.96351 1.23240 0.97285 0.93754 0.92037 1.67733 1.09981 1.04812 1.38558 1.23143 0.93019 0.98316 0.91781 1.22311 1.01226 0.98311 0.96901 1.17338 0.85516 0.84803 1.04623 1.52570 1.70211 1.14783 1.40556 1.01151 0.73617 0.72188 0.73742 1.93478 1.86360 1.34010 1.86604 1.93486 1.53411 1.64430 1.86465 1.30744 1.16502 1.57200 1.12043 0.88345 1.25131 1.00446 0.90570 0.94394 1.70010 1.38720 1.39500 0.99920 0.87464 0.81158 0.82546 0.84507 1.15710 1.14630 1.14849 0.91972 0.92961 0.89945 0.76132 0.85985 0.88005 0.82968 0.79910 0.80237 0.84143 0.73574 0.89784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.06 8.31 71.23 0.59 -1.47 16 2 C -0.24 -8.29 5.99 -19.97 -0.12 -8.41 16 3 C 0.06 1.80 11.95 85.21 1.02 2.82 16 4 N -0.29 -9.40 12.56 -57.09 -0.72 -10.12 16 5 N -0.37 -12.20 3.60 -348.91 -1.26 -13.46 16 6 C 0.16 4.40 6.54 85.63 0.56 4.96 16 7 C -0.07 -1.74 5.50 -19.67 -0.11 -1.84 16 8 C -0.15 -3.00 9.82 22.36 0.22 -2.78 16 9 C 0.09 1.83 11.18 84.68 0.95 2.78 16 10 N -0.50 -11.45 10.36 -195.84 -2.03 -13.48 16 11 C 0.09 1.98 11.18 84.68 0.95 2.92 16 12 C -0.17 -3.76 9.82 22.36 0.22 -3.54 16 13 C 0.30 10.75 7.04 131.43 0.93 11.68 16 14 N -1.03 -37.37 5.65 -55.51 -0.31 -37.68 16 15 S 2.69 124.79 4.20 -56.49 -0.24 124.55 16 16 O -1.01 -50.06 16.02 -128.00 -2.05 -52.11 16 17 O -0.99 -47.12 11.86 -128.00 -1.52 -48.64 16 18 C -1.03 -55.66 10.16 67.73 0.69 -54.98 16 19 H 0.10 5.54 8.06 -2.91 -0.02 5.51 16 20 C 0.11 6.19 5.47 84.65 0.46 6.66 16 21 N -0.85 -48.03 13.96 21.45 0.30 -47.73 16 22 Si 0.83 39.24 26.54 68.60 1.82 41.06 16 23 H -0.23 -10.70 7.11 99.48 0.71 -9.99 16 24 H -0.22 -9.48 7.11 99.48 0.71 -8.78 16 25 H -0.23 -10.89 5.60 99.48 0.56 -10.33 16 26 H 0.06 2.33 7.14 -2.39 -0.02 2.32 16 27 H 0.05 1.82 6.96 -2.39 -0.02 1.81 16 28 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.22 4.53 8.06 -2.91 -0.02 4.51 16 30 H 0.12 2.93 8.10 -2.39 -0.02 2.91 16 31 H 0.10 2.88 8.05 -2.39 -0.02 2.86 16 32 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 33 H 0.18 2.42 8.06 -2.91 -0.02 2.39 16 34 H 0.18 2.79 8.06 -2.91 -0.02 2.76 16 35 H 0.14 2.90 7.08 -2.91 -0.02 2.88 16 36 H 0.43 12.67 7.97 -96.75 -0.77 11.90 16 37 H 0.29 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -69.87 329.58 0.55 -69.32 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: 0.20 Total: 29.48 kcal Atomic # 6 Polarization: -47.55 SS G_CDS: 6.35 Total: -41.20 kcal Atomic # 7 Polarization: -118.45 SS G_CDS: -4.02 Total: -122.47 kcal Atomic # 8 Polarization: -97.18 SS G_CDS: -3.57 Total: -100.75 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 1.82 Total: 41.06 kcal Atomic # 16 Polarization: 124.79 SS G_CDS: -0.24 Total: 124.55 kcal Total: -69.87 0.55 -69.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192935563.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.910 kcal (2) G-P(sol) polarization free energy of solvation -69.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds