Wall clock time and date at job start Fri Apr 10 2020 18:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39776 * 126.08986 * 2 1 4 4 N 1.30841 * 108.31944 * 179.81569 * 3 2 1 5 5 N 1.40062 * 108.39182 * 0.44100 * 4 3 2 6 6 C 1.46502 * 126.04764 * 179.70115 * 5 4 3 7 7 C 1.50702 * 109.46894 * 270.02100 * 6 5 4 8 8 C 1.38227 * 119.61739 * 124.72833 * 7 6 5 9 9 C 1.38633 * 119.16054 * 179.75807 * 8 7 6 10 10 C 1.38668 * 118.41816 * 0.50198 * 9 8 7 11 11 C 1.38177 * 119.16481 * 359.73794 * 10 9 8 12 12 N 1.31854 * 119.61895 * 304.99657 * 7 6 5 13 13 C 1.35253 * 107.91606 * 359.71808 * 5 4 3 14 14 N 1.39210 * 126.22455 * 180.02562 * 13 5 4 15 15 S 1.65604 * 119.99870 * 196.02885 * 14 13 5 16 16 O 1.42103 * 106.39911 * 169.16058 * 15 14 13 17 17 O 1.42101 * 106.40075 * 302.08244 * 15 14 13 18 18 C 1.76199 * 107.21512 * 55.62174 * 15 14 13 19 19 H 1.07993 * 120.00422 * 359.97438 * 18 15 14 20 20 C 1.37882 * 119.99532 * 179.97438 * 18 15 14 21 21 N 1.31509 * 120.00433 * 359.97438 * 20 18 15 22 22 Si 1.86803 * 119.99848 * 179.97438 * 20 18 15 23 23 H 1.48498 * 109.46866 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47180 * 120.00166 * 22 20 18 25 25 H 1.48506 * 109.46896 * 239.99980 * 22 20 18 26 26 H 1.09000 * 109.47256 * 258.44554 * 1 2 3 27 27 H 1.09008 * 109.47298 * 138.44249 * 1 2 3 28 28 H 1.08998 * 109.47677 * 18.44867 * 1 2 3 29 29 H 1.07990 * 125.84230 * 359.97269 * 3 2 1 30 30 H 1.09001 * 109.47068 * 30.01647 * 6 5 4 31 31 H 1.09001 * 109.47579 * 150.02332 * 6 5 4 32 32 H 1.07997 * 120.41847 * 359.97409 * 8 7 6 33 33 H 1.08005 * 120.78894 * 180.26077 * 9 8 7 34 34 H 1.08004 * 120.41421 * 179.71272 * 10 9 8 35 35 H 1.08002 * 119.61924 * 180.02562 * 11 10 9 36 36 H 0.97001 * 120.00023 * 16.02846 * 14 13 5 37 37 H 0.96999 * 120.00554 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3303 1.1295 0.0000 4 7 3.5763 0.7302 0.0040 5 7 3.5915 -0.6703 -0.0035 6 6 4.7853 -1.5195 -0.0084 7 6 5.1945 -1.8026 -1.4309 8 6 6.4784 -1.5015 -1.8452 9 6 6.8463 -1.7705 -3.1545 10 6 5.9016 -2.3250 -4.0048 11 6 4.6356 -2.5942 -3.5208 12 7 4.3221 -2.3296 -2.2674 13 6 2.3092 -1.1003 -0.0059 14 7 1.8862 -2.4266 -0.0125 15 16 0.3215 -2.7948 -0.4106 16 8 0.2706 -4.2053 -0.5751 17 8 -0.5026 -2.0890 0.5069 18 6 0.0094 -2.0971 -1.9982 19 1 0.7873 -1.5505 -2.5103 20 6 -1.2283 -2.2490 -2.5867 21 7 -2.1756 -2.9150 -1.9634 22 14 -1.5595 -1.5087 -4.2695 23 1 -0.3397 -0.8137 -4.7533 24 1 -1.9255 -2.5879 -5.2216 25 1 -2.6770 -0.5356 -4.1709 26 1 -0.3634 -0.2058 1.0068 27 1 -0.3634 -0.7690 -0.6818 28 1 -0.3634 0.9748 -0.3252 29 1 1.9954 2.1562 -0.0004 30 1 5.5973 -1.0077 0.5082 31 1 4.5656 -2.4583 0.5000 32 1 7.1871 -1.0655 -1.1567 33 1 7.8438 -1.5498 -3.5050 34 1 6.1521 -2.5433 -5.0324 35 1 3.8943 -3.0264 -4.1766 36 1 2.5081 -3.1351 0.2160 37 1 -3.0464 -3.0216 -2.3772 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192943509.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:06 Heat of formation + Delta-G solvation = 58.974645 kcal Electronic energy + Delta-G solvation = -25805.769783 eV Core-core repulsion = 22098.904866 eV Total energy + Delta-G solvation = -3706.864917 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.089 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.91618 -40.00729 -35.78901 -34.51232 -34.29091 -33.96314 -33.17976 -32.43193 -31.10963 -29.34507 -27.03251 -26.31050 -24.58951 -23.59521 -22.40745 -20.56214 -20.14350 -18.97536 -17.51840 -17.06052 -16.88405 -16.25757 -16.23912 -15.76946 -15.03219 -14.69694 -14.46426 -14.05822 -14.01020 -13.89368 -13.37620 -13.08627 -13.03813 -12.71303 -12.17236 -12.02070 -11.80471 -11.53284 -11.35432 -11.21838 -10.96101 -10.88424 -10.71181 -10.57863 -10.21802 -10.11976 -9.95273 -9.45499 -9.32059 -9.13738 -9.01777 -8.62654 -8.42754 -7.15687 -6.74125 -5.26125 0.94824 1.22141 1.97427 2.50576 2.90517 3.06046 3.15229 3.24357 3.49152 3.78519 4.03751 4.17705 4.44163 4.53988 4.61028 4.78819 4.82624 4.98235 5.06784 5.23361 5.45488 5.47612 5.54511 5.64927 5.80891 5.98545 6.04322 6.06327 6.26883 6.46768 6.59852 6.73639 7.04141 7.19745 7.22398 7.31295 7.34691 7.78958 7.94313 7.99915 8.04331 8.27288 8.85847 10.19741 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.012932 B = 0.005949 C = 0.005099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.659414 B = 4705.298329 C = 5489.942237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.265 4.265 3 C 0.072 3.928 4 N -0.315 5.315 5 N -0.387 5.387 6 C 0.191 3.809 7 C 0.103 3.897 8 C -0.157 4.157 9 C -0.079 4.079 10 C -0.172 4.172 11 C 0.107 3.893 12 N -0.455 5.455 13 C 0.365 3.635 14 N -1.035 6.035 15 S 2.701 3.299 16 O -0.997 6.997 17 O -0.977 6.977 18 C -0.994 4.994 19 H 0.110 0.890 20 C 0.134 3.866 21 N -0.845 5.845 22 Si 0.920 3.080 23 H -0.261 1.261 24 H -0.272 1.272 25 H -0.270 1.270 26 H 0.077 0.923 27 H 0.120 0.880 28 H 0.033 0.967 29 H 0.180 0.820 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.160 0.840 36 H 0.409 0.591 37 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.162 3.071 -1.357 15.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.280 4.280 3 C -0.113 4.113 4 N -0.137 5.137 5 N -0.175 5.175 6 C 0.067 3.933 7 C -0.037 4.037 8 C -0.177 4.177 9 C -0.105 4.105 10 C -0.192 4.192 11 C -0.050 4.050 12 N -0.163 5.163 13 C 0.142 3.858 14 N -0.778 5.778 15 S 2.802 3.198 16 O -0.987 6.987 17 O -0.966 6.966 18 C -1.128 5.128 19 H 0.128 0.872 20 C -0.084 4.084 21 N -0.474 5.474 22 Si 0.744 3.256 23 H -0.185 1.185 24 H -0.197 1.197 25 H -0.194 1.194 26 H 0.095 0.905 27 H 0.137 0.863 28 H 0.052 0.948 29 H 0.197 0.803 30 H 0.128 0.872 31 H 0.119 0.881 32 H 0.153 0.847 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.177 0.823 36 H 0.241 0.759 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 14.726 2.630 -0.477 14.966 hybrid contribution 0.521 0.219 -1.759 1.848 sum 15.247 2.849 -2.236 15.671 Atomic orbital electron populations 1.21608 0.86996 1.02605 1.05268 1.19832 0.98065 0.89739 1.20398 1.23441 0.89755 0.99271 0.98868 1.77245 1.20886 0.86630 1.28952 1.48086 1.02955 1.04655 1.61834 1.20267 0.86958 0.94319 0.91710 1.21505 0.90373 0.95437 0.96347 1.21885 0.97218 1.01495 0.97138 1.21531 0.99685 0.95951 0.93312 1.22204 0.95052 1.00817 1.01129 1.22907 0.95111 0.95146 0.91837 1.67539 1.34973 1.09864 1.03955 1.17272 0.84978 0.85095 0.98408 1.53873 1.33771 1.08263 1.81890 1.01224 0.68928 0.72594 0.77071 1.93375 1.83870 1.32852 1.88580 1.93598 1.63593 1.72742 1.66714 1.30182 1.06266 1.50296 1.26017 0.87169 1.24690 0.93622 0.90985 0.99132 1.69888 1.04918 1.33867 1.38745 0.86114 0.79259 0.79291 0.80921 1.18498 1.19735 1.19449 0.90495 0.86258 0.94773 0.80312 0.87208 0.88102 0.84723 0.84863 0.84777 0.82287 0.75923 0.89788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.44 7.93 36.00 0.29 -2.15 16 2 C -0.27 -5.62 5.89 -104.79 -0.62 -6.23 16 3 C 0.07 1.32 11.95 -17.40 -0.21 1.12 16 4 N -0.32 -5.75 12.56 30.60 0.38 -5.37 16 5 N -0.39 -6.90 3.56 -61.63 -0.22 -7.12 16 6 C 0.19 2.57 6.71 -5.19 -0.03 2.54 16 7 C 0.10 1.44 6.39 -82.59 -0.53 0.91 16 8 C -0.16 -1.72 9.71 -39.44 -0.38 -2.10 16 9 C -0.08 -0.77 10.18 -39.28 -0.40 -1.17 16 10 C -0.17 -1.85 10.11 -39.44 -0.40 -2.25 16 11 C 0.11 1.50 11.18 -17.55 -0.20 1.30 16 12 N -0.45 -7.49 10.22 -9.47 -0.10 -7.58 16 13 C 0.37 7.51 7.42 -153.40 -1.14 6.37 16 14 N -1.04 -21.74 5.85 31.11 0.18 -21.56 16 15 S 2.70 69.97 4.56 -107.50 -0.49 69.48 16 16 O -1.00 -28.51 18.02 -57.17 -1.03 -29.54 16 17 O -0.98 -26.66 12.81 -57.17 -0.73 -27.39 16 18 C -0.99 -26.43 6.74 30.60 0.21 -26.22 16 19 H 0.11 2.86 7.81 -52.49 -0.41 2.45 16 20 C 0.13 3.57 5.40 -17.82 -0.10 3.48 16 21 N -0.84 -23.67 13.19 55.43 0.73 -22.94 16 22 Si 0.92 20.23 29.54 -169.99 -5.02 15.21 16 23 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 24 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 25 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 26 H 0.08 1.81 6.78 -51.93 -0.35 1.46 16 27 H 0.12 3.06 2.27 -33.29 -0.08 2.99 16 28 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.18 2.60 8.06 -52.49 -0.42 2.18 16 30 H 0.11 1.14 7.87 -51.93 -0.41 0.73 16 31 H 0.10 1.18 7.40 -51.93 -0.38 0.80 16 32 H 0.13 1.09 7.95 -52.49 -0.42 0.67 16 33 H 0.13 0.90 8.06 -52.48 -0.42 0.47 16 34 H 0.13 1.06 8.06 -52.48 -0.42 0.63 16 35 H 0.16 2.04 8.06 -52.49 -0.42 1.62 16 36 H 0.41 7.34 8.11 -34.48 -0.28 7.06 16 37 H 0.29 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 328.11 15.07 4.94 4.94 Total: -1.00 -35.45 328.11 -8.43 -43.88 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -3.58 Total: 12.39 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: -3.51 Total: -24.41 kcal Atomic # 7 Polarization: -65.55 SS G_CDS: 0.98 Total: -64.57 kcal Atomic # 8 Polarization: -55.17 SS G_CDS: -1.76 Total: -56.93 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 16 Polarization: 69.97 SS G_CDS: -0.49 Total: 69.48 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.45 -8.43 -43.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192943509.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.857 kcal (2) G-P(sol) polarization free energy of solvation -35.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds