Wall clock time and date at job start Fri Apr 10 2020 18:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39776 * 126.08986 * 2 1 4 4 N 1.30841 * 108.31944 * 179.81569 * 3 2 1 5 5 N 1.40062 * 108.39182 * 0.44100 * 4 3 2 6 6 C 1.46502 * 126.04764 * 179.70115 * 5 4 3 7 7 C 1.50702 * 109.46894 * 270.02100 * 6 5 4 8 8 C 1.38227 * 119.61739 * 124.72833 * 7 6 5 9 9 C 1.38633 * 119.16054 * 179.75807 * 8 7 6 10 10 C 1.38668 * 118.41816 * 0.50198 * 9 8 7 11 11 C 1.38177 * 119.16481 * 359.73794 * 10 9 8 12 12 N 1.31854 * 119.61895 * 304.99657 * 7 6 5 13 13 C 1.35253 * 107.91606 * 359.71808 * 5 4 3 14 14 N 1.39210 * 126.22455 * 180.02562 * 13 5 4 15 15 S 1.65604 * 119.99870 * 196.02885 * 14 13 5 16 16 O 1.42103 * 106.39911 * 169.16058 * 15 14 13 17 17 O 1.42101 * 106.40075 * 302.08244 * 15 14 13 18 18 C 1.76199 * 107.21512 * 55.62174 * 15 14 13 19 19 H 1.07993 * 120.00422 * 359.97438 * 18 15 14 20 20 C 1.37882 * 119.99532 * 179.97438 * 18 15 14 21 21 N 1.31509 * 120.00433 * 359.97438 * 20 18 15 22 22 Si 1.86803 * 119.99848 * 179.97438 * 20 18 15 23 23 H 1.48498 * 109.46866 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47180 * 120.00166 * 22 20 18 25 25 H 1.48506 * 109.46896 * 239.99980 * 22 20 18 26 26 H 1.09000 * 109.47256 * 258.44554 * 1 2 3 27 27 H 1.09008 * 109.47298 * 138.44249 * 1 2 3 28 28 H 1.08998 * 109.47677 * 18.44867 * 1 2 3 29 29 H 1.07990 * 125.84230 * 359.97269 * 3 2 1 30 30 H 1.09001 * 109.47068 * 30.01647 * 6 5 4 31 31 H 1.09001 * 109.47579 * 150.02332 * 6 5 4 32 32 H 1.07997 * 120.41847 * 359.97409 * 8 7 6 33 33 H 1.08005 * 120.78894 * 180.26077 * 9 8 7 34 34 H 1.08004 * 120.41421 * 179.71272 * 10 9 8 35 35 H 1.08002 * 119.61924 * 180.02562 * 11 10 9 36 36 H 0.97001 * 120.00023 * 16.02846 * 14 13 5 37 37 H 0.96999 * 120.00554 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3303 1.1295 0.0000 4 7 3.5763 0.7302 0.0040 5 7 3.5915 -0.6703 -0.0035 6 6 4.7853 -1.5195 -0.0084 7 6 5.1945 -1.8026 -1.4309 8 6 6.4784 -1.5015 -1.8452 9 6 6.8463 -1.7705 -3.1545 10 6 5.9016 -2.3250 -4.0048 11 6 4.6356 -2.5942 -3.5208 12 7 4.3221 -2.3296 -2.2674 13 6 2.3092 -1.1003 -0.0059 14 7 1.8862 -2.4266 -0.0125 15 16 0.3215 -2.7948 -0.4106 16 8 0.2706 -4.2053 -0.5751 17 8 -0.5026 -2.0890 0.5069 18 6 0.0094 -2.0971 -1.9982 19 1 0.7873 -1.5505 -2.5103 20 6 -1.2283 -2.2490 -2.5867 21 7 -2.1756 -2.9150 -1.9634 22 14 -1.5595 -1.5087 -4.2695 23 1 -0.3397 -0.8137 -4.7533 24 1 -1.9255 -2.5879 -5.2216 25 1 -2.6770 -0.5356 -4.1709 26 1 -0.3634 -0.2058 1.0068 27 1 -0.3634 -0.7690 -0.6818 28 1 -0.3634 0.9748 -0.3252 29 1 1.9954 2.1562 -0.0004 30 1 5.5973 -1.0077 0.5082 31 1 4.5656 -2.4583 0.5000 32 1 7.1871 -1.0655 -1.1567 33 1 7.8438 -1.5498 -3.5050 34 1 6.1521 -2.5433 -5.0324 35 1 3.8943 -3.0264 -4.1766 36 1 2.5081 -3.1351 0.2160 37 1 -3.0464 -3.0216 -2.3772 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192943509.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:05 Heat of formation + Delta-G solvation = 32.506953 kcal Electronic energy + Delta-G solvation = -25806.917509 eV Core-core repulsion = 22098.904866 eV Total energy + Delta-G solvation = -3708.012642 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.089 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.31461 -40.99510 -37.85978 -36.40029 -36.09867 -35.28475 -35.19626 -33.33480 -32.37885 -30.84490 -28.49024 -28.13247 -26.11786 -24.49895 -23.46342 -21.99726 -21.79089 -20.88780 -19.05421 -18.78568 -18.25011 -17.85215 -17.23724 -17.04326 -16.70141 -16.19279 -15.98201 -15.91802 -15.65666 -14.97566 -14.53774 -14.32219 -14.17213 -13.99667 -13.96506 -13.47305 -13.35547 -13.28087 -13.05112 -12.84157 -12.81258 -12.61850 -12.47354 -12.32278 -12.16995 -11.78010 -11.26720 -11.01588 -10.83174 -10.57605 -10.44156 -10.04730 -9.81838 -8.82830 -8.70261 -7.34808 -0.03738 0.11365 0.37116 1.01824 1.33179 1.35091 1.51847 1.61047 1.95404 2.21576 2.59640 2.67378 2.85898 3.23943 3.52111 3.58795 3.81184 4.00950 4.05630 4.15270 4.19861 4.30642 4.39062 4.44363 4.52673 4.63150 4.81129 4.86606 5.06245 5.16194 5.23398 5.28353 5.35545 5.45464 5.64129 5.75012 5.75886 5.92757 6.12253 6.32035 6.79196 6.81145 7.06492 8.22386 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.012932 B = 0.005949 C = 0.005099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.659414 B = 4705.298329 C = 5489.942237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.294 4.294 3 C 0.075 3.925 4 N -0.310 5.310 5 N -0.378 5.378 6 C 0.177 3.823 7 C 0.076 3.924 8 C -0.149 4.149 9 C -0.075 4.075 10 C -0.162 4.162 11 C 0.073 3.927 12 N -0.504 5.504 13 C 0.349 3.651 14 N -1.026 6.026 15 S 2.712 3.288 16 O -1.033 7.033 17 O -0.999 6.999 18 C -0.999 4.999 19 H 0.109 0.891 20 C 0.082 3.918 21 N -0.887 5.887 22 Si 0.982 3.018 23 H -0.258 1.258 24 H -0.259 1.259 25 H -0.255 1.255 26 H 0.059 0.941 27 H 0.092 0.908 28 H 0.054 0.946 29 H 0.214 0.786 30 H 0.145 0.855 31 H 0.110 0.890 32 H 0.168 0.832 33 H 0.173 0.827 34 H 0.164 0.836 35 H 0.153 0.847 36 H 0.420 0.580 37 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.941 4.766 -2.677 18.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.309 4.309 3 C -0.111 4.111 4 N -0.131 5.131 5 N -0.166 5.166 6 C 0.056 3.944 7 C -0.063 4.063 8 C -0.169 4.169 9 C -0.101 4.101 10 C -0.181 4.181 11 C -0.084 4.084 12 N -0.213 5.213 13 C 0.125 3.875 14 N -0.772 5.772 15 S 2.814 3.186 16 O -1.023 7.023 17 O -0.988 6.988 18 C -1.133 5.133 19 H 0.127 0.873 20 C -0.131 4.131 21 N -0.518 5.518 22 Si 0.801 3.199 23 H -0.181 1.181 24 H -0.183 1.183 25 H -0.179 1.179 26 H 0.077 0.923 27 H 0.110 0.890 28 H 0.073 0.927 29 H 0.231 0.769 30 H 0.163 0.837 31 H 0.128 0.872 32 H 0.185 0.815 33 H 0.191 0.809 34 H 0.181 0.819 35 H 0.170 0.830 36 H 0.255 0.745 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 17.542 4.306 -1.777 18.150 hybrid contribution -0.199 -0.306 -1.318 1.367 sum 17.343 4.000 -3.095 18.065 Atomic orbital electron populations 1.21356 0.88673 1.02725 1.03502 1.19925 0.97490 0.91333 1.22127 1.23897 0.89036 1.00114 0.98029 1.77200 1.20793 0.86881 1.28252 1.48374 1.03057 1.04740 1.60385 1.20787 0.86354 0.94646 0.92623 1.21627 0.91667 0.96879 0.96103 1.22256 0.96321 1.00038 0.98247 1.22035 1.01046 0.94379 0.92608 1.22500 0.93703 0.99284 1.02652 1.23039 0.96871 0.96895 0.91578 1.67397 1.37053 1.11555 1.05333 1.17336 0.86567 0.84352 0.99221 1.53169 1.32741 1.09350 1.81987 1.00595 0.69498 0.71595 0.76957 1.93319 1.85074 1.34949 1.88990 1.93582 1.65156 1.72780 1.67276 1.30256 1.06615 1.50265 1.26152 0.87255 1.25731 0.93181 0.91101 1.03130 1.69951 1.05787 1.35295 1.40765 0.85201 0.79579 0.79060 0.76031 1.18108 1.18341 1.17866 0.92263 0.88970 0.92734 0.76923 0.83723 0.87176 0.81474 0.80914 0.81882 0.82997 0.74518 0.88898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.85 7.93 71.23 0.57 -4.28 16 2 C -0.29 -12.40 5.89 -19.97 -0.12 -12.52 16 3 C 0.07 2.61 11.95 85.21 1.02 3.63 16 4 N -0.31 -10.65 12.56 -57.09 -0.72 -11.37 16 5 N -0.38 -13.00 3.56 -348.89 -1.24 -14.24 16 6 C 0.18 4.46 6.71 85.63 0.57 5.03 16 7 C 0.08 2.01 6.39 42.55 0.27 2.28 16 8 C -0.15 -2.73 9.71 22.36 0.22 -2.51 16 9 C -0.07 -1.18 10.18 22.47 0.23 -0.95 16 10 C -0.16 -3.07 10.11 22.36 0.23 -2.85 16 11 C 0.07 2.03 11.18 84.67 0.95 2.97 16 12 N -0.50 -16.54 10.22 -183.89 -1.88 -18.41 16 13 C 0.35 14.38 7.42 131.43 0.98 15.36 16 14 N -1.03 -44.30 5.85 -55.50 -0.32 -44.62 16 15 S 2.71 145.90 4.56 -56.49 -0.26 145.65 16 16 O -1.03 -61.64 18.02 -128.00 -2.31 -63.95 16 17 O -1.00 -56.84 12.81 -128.00 -1.64 -58.48 16 18 C -1.00 -54.51 6.74 67.74 0.46 -54.05 16 19 H 0.11 5.83 7.81 -2.91 -0.02 5.81 16 20 C 0.08 4.46 5.40 84.66 0.46 4.92 16 21 N -0.89 -50.95 13.19 21.45 0.28 -50.66 16 22 Si 0.98 41.30 29.54 68.60 2.03 43.33 16 23 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 24 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 25 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 26 H 0.06 2.89 6.78 -2.39 -0.02 2.87 16 27 H 0.09 4.86 2.27 -17.36 -0.04 4.82 16 28 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.21 5.61 8.06 -2.92 -0.02 5.59 16 30 H 0.14 2.52 7.87 -2.39 -0.02 2.50 16 31 H 0.11 2.48 7.40 -2.39 -0.02 2.46 16 32 H 0.17 1.87 7.95 -2.91 -0.02 1.85 16 33 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 34 H 0.16 2.03 8.06 -2.91 -0.02 2.00 16 35 H 0.15 4.09 8.06 -2.91 -0.02 4.07 16 36 H 0.42 15.63 8.11 -96.74 -0.78 14.84 16 37 H 0.30 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -79.50 328.11 0.08 -79.42 By element: Atomic # 1 Polarization: 35.99 SS G_CDS: 0.31 Total: 36.31 kcal Atomic # 6 Polarization: -48.78 SS G_CDS: 5.82 Total: -42.96 kcal Atomic # 7 Polarization: -135.43 SS G_CDS: -3.88 Total: -139.31 kcal Atomic # 8 Polarization: -118.48 SS G_CDS: -3.95 Total: -122.43 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Atomic # 16 Polarization: 145.90 SS G_CDS: -0.26 Total: 145.65 kcal Total: -79.50 0.08 -79.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192943509.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.927 kcal (2) G-P(sol) polarization free energy of solvation -79.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds