Wall clock time and date at job start Fri Apr 10 2020 18:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99719 * 359.71484 * 7 2 1 10 10 O 1.42094 * 106.40490 * 293.82249 * 9 7 2 11 11 O 1.42107 * 106.39987 * 66.74063 * 9 7 2 12 12 N 1.65600 * 107.21803 * 180.27922 * 9 7 2 13 13 C 1.48516 * 125.82514 * 90.02925 * 12 9 7 14 14 C 1.51743 * 105.56971 * 176.05191 * 13 12 9 15 15 H 1.08993 * 109.34036 * 275.16329 * 14 13 12 16 16 C 1.48683 * 119.91275 * 147.77776 * 14 13 12 17 17 O 1.21286 * 122.04314 * 20.83782 * 16 14 13 18 18 N 1.36691 * 115.90995 * 200.86559 * 16 14 13 19 19 C 1.40371 * 119.97924 * 358.17785 * 18 16 14 20 20 C 1.38534 * 120.84491 * 207.75857 * 19 18 16 21 21 C 1.38147 * 120.02332 * 180.67392 * 20 19 18 22 22 C 1.38312 * 120.31652 * 0.02997 * 21 20 19 23 23 C 1.38478 * 120.06150 * 359.73565 * 22 21 20 24 24 C 1.37256 * 119.92276 * 359.97438 * 23 22 21 25 25 C 1.48697 * 123.82158 * 181.41212 * 24 23 22 26 26 H 1.08994 * 110.26850 * 255.30690 * 25 24 23 27 27 C 1.48913 * 125.82359 * 269.71622 * 12 9 7 28 28 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 29 29 H 1.09007 * 110.22328 * 295.07251 * 13 12 9 30 30 H 1.08994 * 110.22571 * 57.02424 * 13 12 9 31 31 H 0.96996 * 120.00909 * 178.20869 * 18 16 14 32 32 H 1.08002 * 119.98753 * 0.66687 * 20 19 18 33 33 H 1.08005 * 119.83905 * 180.02562 * 21 20 19 34 34 H 1.08000 * 119.96906 * 179.70763 * 22 21 20 35 35 H 1.07999 * 120.03372 * 179.97438 * 23 22 21 36 36 H 1.08995 * 110.67359 * 273.88755 * 27 12 9 37 37 H 1.09003 * 110.67065 * 37.03692 * 27 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 16 1.1237 -2.7199 0.0064 10 8 0.4516 -2.7897 1.2564 11 8 0.4514 -2.8008 -1.2430 12 7 2.2485 -3.9353 0.0117 13 6 2.8386 -4.5683 1.2187 14 6 3.7299 -5.6815 0.7002 15 1 3.1302 -6.5762 0.5338 16 6 4.9659 -6.0476 1.4411 17 8 5.1195 -5.7723 2.6123 18 7 5.9187 -6.7129 0.7215 19 6 5.6801 -7.0428 -0.6219 20 6 6.2907 -8.1423 -1.2026 21 6 6.0545 -8.4433 -2.5301 22 6 5.2098 -7.6508 -3.2860 23 6 4.5912 -6.5526 -2.7126 24 6 4.8168 -6.2513 -1.3927 25 6 4.1759 -5.1130 -0.6823 26 1 4.8909 -4.3015 -0.5471 27 6 2.8360 -4.5844 -1.1928 28 1 -0.4850 0.8400 0.0004 29 1 3.4295 -3.8406 1.7751 30 1 2.0520 -4.9791 1.8515 31 1 6.7594 -6.9575 1.1391 32 1 6.9518 -8.7644 -0.6174 33 1 6.5319 -9.3015 -2.9797 34 1 5.0328 -7.8886 -4.3245 35 1 3.9320 -5.9338 -3.3034 36 1 2.2029 -5.4023 -1.5366 37 1 2.9885 -3.8542 -1.9876 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192953578.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:21 Heat of formation + Delta-G solvation = -85.130056 kcal Electronic energy + Delta-G solvation = -25201.117354 eV Core-core repulsion = 21455.710837 eV Total energy + Delta-G solvation = -3745.406517 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.082 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.50636 -38.78721 -37.66542 -35.30526 -35.26505 -33.99283 -33.11851 -32.44002 -30.10286 -29.79436 -28.03756 -26.13791 -24.11958 -23.21480 -22.79040 -20.72667 -19.33795 -18.79982 -18.09311 -17.61617 -17.18392 -16.52380 -16.15937 -15.57069 -15.14253 -14.79172 -14.61473 -14.50378 -14.21610 -13.97082 -13.76633 -13.69155 -12.87527 -12.74861 -12.73683 -12.30930 -12.01693 -11.93341 -11.45370 -11.24121 -11.23534 -11.03600 -10.93978 -10.75162 -10.59079 -10.42859 -10.32878 -10.24568 -10.05378 -9.26725 -9.07508 -8.96978 -8.29847 -8.25143 -6.71101 -5.33316 0.94085 1.12204 2.11738 2.34010 2.79305 3.05405 3.13683 3.21057 3.52226 4.00095 4.02921 4.26764 4.35357 4.61938 4.63270 4.67498 4.86990 4.98377 5.03862 5.13668 5.25353 5.41196 5.50597 5.52560 5.74105 5.78363 5.87332 5.93311 5.98965 6.08701 6.17360 6.20348 6.21368 6.31678 6.49155 6.61860 6.73356 6.91587 7.31774 7.32362 7.82586 7.97159 8.88090 10.22647 Molecular weight = 322.08amu Principal moments of inertia in cm(-1) A = 0.018469 B = 0.004034 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.650700 B = 6938.697537 C = 7301.239795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.133 3.867 3 Si 0.921 3.079 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.270 1.270 7 C -1.019 5.019 8 H 0.103 0.897 9 S 2.727 3.273 10 O -0.997 6.997 11 O -0.998 6.998 12 N -1.025 6.025 13 C 0.152 3.848 14 C -0.136 4.136 15 H 0.114 0.886 16 C 0.547 3.453 17 O -0.504 6.504 18 N -0.679 5.679 19 C 0.155 3.845 20 C -0.148 4.148 21 C -0.096 4.096 22 C -0.136 4.136 23 C -0.079 4.079 24 C -0.096 4.096 25 C -0.063 4.063 26 H 0.104 0.896 27 C 0.143 3.857 28 H 0.291 0.709 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.409 0.591 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.135 0.865 36 H 0.070 0.930 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.299 -15.241 -5.593 20.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.085 4.085 3 Si 0.744 3.256 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.195 1.195 7 C -1.153 5.153 8 H 0.121 0.879 9 S 2.829 3.171 10 O -0.988 6.988 11 O -0.989 6.989 12 N -0.861 5.861 13 C 0.026 3.974 14 C -0.158 4.158 15 H 0.132 0.868 16 C 0.335 3.665 17 O -0.376 6.376 18 N -0.326 5.326 19 C 0.059 3.941 20 C -0.169 4.169 21 C -0.115 4.115 22 C -0.155 4.155 23 C -0.097 4.097 24 C -0.099 4.099 25 C -0.083 4.083 26 H 0.122 0.878 27 C 0.017 3.983 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.247 0.753 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.153 0.847 36 H 0.089 0.911 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 11.985 -14.996 -4.909 19.814 hybrid contribution 1.497 0.980 0.164 1.797 sum 13.482 -14.016 -4.744 20.018 Atomic orbital electron populations 1.69896 1.06772 1.30707 1.40183 1.24751 0.94471 1.00814 0.88455 0.86129 0.80460 0.80366 0.78596 1.18622 1.19570 1.19549 1.30628 1.06226 1.11682 1.66736 0.87892 1.00232 0.71544 0.72508 0.72844 1.93367 1.72333 1.87389 1.45706 1.93366 1.72255 1.87445 1.45792 1.60009 1.62100 1.54036 1.09926 1.20814 0.95635 0.93133 0.87823 1.21868 0.95223 1.02041 0.96677 0.86790 1.20209 0.84442 0.75759 0.86042 1.90785 1.79481 1.51958 1.15405 1.44129 1.19714 1.58554 1.10158 1.17984 0.98325 0.94425 0.83318 1.20685 1.03534 0.96425 0.96283 1.20957 0.97858 0.99425 0.93230 1.21182 0.98164 0.95849 1.00266 1.20714 0.98738 0.96982 0.93296 1.19141 1.00226 0.96490 0.94044 1.20890 0.98256 0.95985 0.93123 0.87798 1.21431 0.90600 0.97625 0.88626 0.89880 0.90642 0.90103 0.75309 0.85668 0.85661 0.85556 0.84700 0.91132 0.89477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.80 13.19 55.43 0.73 -24.07 16 2 C 0.13 3.71 5.46 -17.82 -0.10 3.61 16 3 Si 0.92 20.61 29.54 -169.99 -5.02 15.59 16 4 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -1.02 -28.00 9.75 30.60 0.30 -27.71 16 8 H 0.10 2.61 7.81 -52.49 -0.41 2.20 16 9 S 2.73 72.07 5.24 -107.50 -0.56 71.50 16 10 O -1.00 -29.22 17.62 -57.17 -1.01 -30.23 16 11 O -1.00 -28.54 17.62 -57.17 -1.01 -29.55 16 12 N -1.03 -20.45 3.77 -111.78 -0.42 -20.87 16 13 C 0.15 2.67 6.59 -3.57 -0.02 2.65 16 14 C -0.14 -1.90 2.29 -91.77 -0.21 -2.11 16 15 H 0.11 1.43 8.06 -51.93 -0.42 1.01 16 16 C 0.55 7.53 7.65 -11.07 -0.08 7.45 16 17 O -0.50 -8.51 17.73 5.55 0.10 -8.41 16 18 N -0.68 -7.13 5.44 -9.71 -0.05 -7.18 16 19 C 0.15 1.55 6.35 -83.10 -0.53 1.02 16 20 C -0.15 -1.19 9.96 -39.51 -0.39 -1.58 16 21 C -0.10 -0.70 10.03 -39.59 -0.40 -1.09 16 22 C -0.14 -1.06 10.06 -39.47 -0.40 -1.46 16 23 C -0.08 -0.74 9.51 -39.85 -0.38 -1.12 16 24 C -0.10 -1.04 5.37 -105.19 -0.57 -1.61 16 25 C -0.06 -0.82 2.70 -91.21 -0.25 -1.07 16 26 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 27 C 0.14 2.23 6.04 -2.80 -0.02 2.21 16 28 H 0.29 7.63 8.31 -40.82 -0.34 7.29 16 29 H 0.08 1.36 8.12 -51.93 -0.42 0.94 16 30 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.41 3.43 8.93 -40.82 -0.36 3.06 16 32 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 33 H 0.13 0.62 8.06 -52.48 -0.42 0.19 16 34 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.14 1.14 7.70 -52.49 -0.40 0.73 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 328.90 15.07 4.96 4.96 Total: -1.00 -36.27 328.90 -9.44 -45.71 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -4.11 Total: 3.35 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -3.04 Total: -20.80 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: 0.26 Total: -52.13 kcal Atomic # 8 Polarization: -66.27 SS G_CDS: -1.92 Total: -68.19 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 72.07 SS G_CDS: -0.56 Total: 71.50 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -36.27 -9.44 -45.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192953578.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.416 kcal (2) G-P(sol) polarization free energy of solvation -36.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds