Wall clock time and date at job start Fri Apr 10 2020 18:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00219 * 0.02562 * 7 2 1 10 10 O 1.42101 * 106.39842 * 293.53625 * 9 7 2 11 11 O 1.42100 * 106.40241 * 66.45331 * 9 7 2 12 12 N 1.65601 * 107.21908 * 179.97438 * 9 7 2 13 13 C 1.46834 * 120.14395 * 90.00017 * 12 9 7 14 14 C 1.53720 * 109.01413 * 123.46278 * 13 12 9 15 15 N 1.46846 * 107.45355 * 45.99909 * 14 13 12 16 16 C 1.34198 * 127.98239 * 127.44466 * 15 14 13 17 17 O 1.21548 * 125.04509 * 7.57759 * 16 15 14 18 18 C 1.46532 * 109.90330 * 187.60188 * 16 15 14 19 19 C 1.39748 * 130.73168 * 175.94387 * 18 16 15 20 20 C 1.38643 * 116.85846 * 181.04299 * 19 18 16 21 21 C 1.38093 * 121.87816 * 0.03253 * 20 19 18 22 22 C 1.39146 * 121.79893 * 359.77942 * 21 20 19 23 23 C 1.37746 * 117.02492 * 0.03439 * 22 21 20 24 24 C 1.47808 * 123.12090 * 308.61854 * 15 14 13 25 25 H 1.09000 * 110.47106 * 291.42504 * 24 15 14 26 26 C 1.47093 * 120.14938 * 269.72223 * 12 9 7 27 27 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.54384 * 243.31969 * 13 12 9 29 29 H 1.08997 * 109.54744 * 3.59903 * 13 12 9 30 30 H 1.09001 * 109.85992 * 165.48319 * 14 13 12 31 31 H 1.08997 * 109.86016 * 286.43558 * 14 13 12 32 32 H 1.07997 * 121.57213 * 1.05980 * 19 18 16 33 33 H 1.08003 * 119.06534 * 180.02562 * 20 19 18 34 34 H 1.07995 * 119.10013 * 179.77333 * 21 20 19 35 35 H 1.08001 * 121.48287 * 180.02562 * 22 21 20 36 36 H 1.09006 * 109.73225 * 357.15296 * 26 12 9 37 37 H 1.08992 * 109.73583 * 117.84367 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 16 1.1236 -2.7200 0.0005 10 8 0.4511 -2.7950 1.2501 11 8 0.4519 -2.7956 -1.2494 12 7 2.2485 -3.9354 0.0005 13 6 2.7493 -4.4765 1.2703 14 6 2.5011 -5.9932 1.3010 15 7 2.9262 -6.5355 0.0042 16 6 3.7715 -7.5514 -0.2291 17 8 4.2332 -8.2849 0.6230 18 6 4.0555 -7.6446 -1.6636 19 6 4.9238 -8.4823 -2.3687 20 6 4.9841 -8.3080 -3.7429 21 6 4.2254 -7.3534 -4.3909 22 6 3.3546 -6.5161 -3.7005 23 6 3.2805 -6.6793 -2.3347 24 6 2.4703 -5.9855 -1.2898 25 1 1.4089 -6.1855 -1.4363 26 6 2.7458 -4.4818 -1.2714 27 1 -0.4850 -0.8401 -0.0004 28 1 3.8183 -4.2802 1.3540 29 1 2.2242 -4.0041 2.1005 30 1 3.0845 -6.4479 2.1016 31 1 1.4407 -6.1918 1.4570 32 1 5.5196 -9.2303 -1.8670 33 1 5.6434 -8.9368 -4.3230 34 1 4.3104 -7.2539 -5.4629 35 1 2.7633 -5.7714 -4.2126 36 1 2.2290 -4.0044 -2.1041 37 1 3.8182 -4.3056 -1.3534 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192953975.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:27 Heat of formation + Delta-G solvation = -70.618916 kcal Electronic energy + Delta-G solvation = -25414.982197 eV Core-core repulsion = 21670.204930 eV Total energy + Delta-G solvation = -3744.777267 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.082 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.46946 -38.22299 -37.45560 -35.80619 -34.59263 -34.55328 -33.26743 -32.58627 -31.31697 -29.39448 -27.43565 -25.61567 -24.55075 -23.45176 -21.86790 -21.39815 -19.96556 -19.39701 -17.87378 -16.95744 -16.80321 -16.32832 -16.15238 -15.58405 -15.38507 -15.02125 -14.67091 -14.46663 -14.14889 -13.96571 -13.85588 -13.73158 -13.27275 -13.04672 -12.78470 -12.59662 -12.13633 -11.88074 -11.59676 -11.55525 -11.30525 -11.15632 -11.11561 -10.76288 -10.61181 -10.53798 -10.35986 -9.90373 -9.44907 -9.27410 -9.21061 -9.08242 -8.71327 -8.20734 -7.27364 -5.50645 0.59356 1.04267 1.84242 2.69376 2.80316 3.17255 3.18655 3.39779 3.62364 3.85934 4.06209 4.16316 4.36688 4.58942 4.62077 4.74952 4.85081 4.94267 5.03772 5.14918 5.19887 5.25716 5.33176 5.43807 5.49719 5.55673 5.63694 5.76616 5.81801 5.94326 5.99478 6.03203 6.05534 6.16803 6.32957 6.50986 6.58964 7.02322 7.12581 7.50193 7.95141 8.10393 8.50932 10.10039 Molecular weight = 322.08amu Principal moments of inertia in cm(-1) A = 0.019871 B = 0.004149 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.757451 B = 6746.236219 C = 7401.483138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.091 3.909 3 Si 1.080 2.920 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.275 1.275 7 C -1.084 5.084 8 H 0.103 0.897 9 S 2.686 3.314 10 O -1.006 7.006 11 O -1.007 7.007 12 N -1.004 6.004 13 C 0.107 3.893 14 C 0.121 3.879 15 N -0.604 5.604 16 C 0.560 3.440 17 O -0.535 6.535 18 C -0.157 4.157 19 C -0.042 4.042 20 C -0.132 4.132 21 C -0.091 4.091 22 C -0.094 4.094 23 C -0.071 4.071 24 C 0.147 3.853 25 H 0.110 0.890 26 C 0.127 3.873 27 H 0.276 0.724 28 H 0.069 0.931 29 H 0.111 0.889 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.139 0.861 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.144 0.856 36 H 0.111 0.889 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.005 -12.316 -6.783 16.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.128 4.128 3 Si 0.902 3.098 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.200 1.200 7 C -1.219 5.219 8 H 0.121 0.879 9 S 2.790 3.210 10 O -0.996 6.996 11 O -0.997 6.997 12 N -0.838 5.838 13 C -0.020 4.020 14 C -0.002 4.002 15 N -0.337 5.337 16 C 0.349 3.651 17 O -0.413 6.413 18 C -0.160 4.160 19 C -0.061 4.061 20 C -0.150 4.150 21 C -0.109 4.109 22 C -0.112 4.112 23 C -0.073 4.073 24 C 0.042 3.958 25 H 0.127 0.873 26 C 0.000 4.000 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.129 0.871 30 H 0.119 0.881 31 H 0.097 0.903 32 H 0.156 0.844 33 H 0.146 0.854 34 H 0.147 0.853 35 H 0.162 0.838 36 H 0.129 0.871 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.035 -11.236 -6.163 15.125 hybrid contribution 0.781 -1.383 -0.020 1.589 sum 8.817 -12.619 -6.183 16.589 Atomic orbital electron populations 1.70871 1.07175 1.31928 1.37125 1.25997 0.95099 1.03952 0.87765 0.83446 0.75327 0.73267 0.77746 1.19524 1.20044 1.20038 1.31456 1.07991 1.12285 1.70129 0.87857 1.01269 0.72748 0.74002 0.73025 1.93416 1.73037 1.87714 1.45396 1.93408 1.73114 1.87748 1.45399 1.57869 1.62459 1.54098 1.09400 1.21746 1.00625 0.92568 0.87024 1.22086 1.01074 0.94010 0.83001 1.48250 1.45703 1.32918 1.06853 1.17972 0.78556 0.80251 0.88280 1.90754 1.54424 1.44721 1.51450 1.20565 1.01119 0.99870 0.94479 1.21219 0.95205 0.96415 0.93305 1.21165 1.00415 0.99258 0.94194 1.21366 0.94847 0.94331 1.00361 1.20816 0.99171 0.99764 0.91461 1.20350 0.96480 0.96163 0.94298 1.20602 0.99057 0.94804 0.81359 0.87251 1.21435 1.00813 0.90283 0.87471 0.91239 0.91239 0.87139 0.88104 0.90283 0.84353 0.85444 0.85263 0.83811 0.87141 0.90898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.93 13.66 55.43 0.76 -24.18 16 2 C 0.09 2.49 5.46 -17.82 -0.10 2.39 16 3 Si 1.08 23.16 29.90 -169.99 -5.08 18.07 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 7 C -1.08 -28.66 9.75 30.60 0.30 -28.37 16 8 H 0.10 2.53 7.81 -52.48 -0.41 2.12 16 9 S 2.69 66.03 4.35 -107.50 -0.47 65.56 16 10 O -1.01 -26.95 16.20 -57.17 -0.93 -27.87 16 11 O -1.01 -26.59 16.20 -57.17 -0.93 -27.52 16 12 N -1.00 -18.86 3.23 -113.33 -0.37 -19.23 16 13 C 0.11 1.73 6.61 -3.49 -0.02 1.70 16 14 C 0.12 1.75 7.11 -3.48 -0.02 1.72 16 15 N -0.60 -9.20 3.01 -168.33 -0.51 -9.70 16 16 C 0.56 8.93 7.99 -13.18 -0.11 8.83 16 17 O -0.53 -9.89 17.76 5.32 0.09 -9.79 16 18 C -0.16 -2.10 6.15 -105.02 -0.65 -2.75 16 19 C -0.04 -0.46 10.32 -38.87 -0.40 -0.86 16 20 C -0.13 -1.12 9.94 -39.48 -0.39 -1.52 16 21 C -0.09 -0.75 9.97 -39.30 -0.39 -1.14 16 22 C -0.09 -0.93 10.25 -39.42 -0.40 -1.33 16 23 C -0.07 -0.88 5.60 -104.49 -0.58 -1.47 16 24 C 0.15 2.10 3.79 -69.09 -0.26 1.84 16 25 H 0.11 1.52 8.14 -51.93 -0.42 1.10 16 26 C 0.13 2.02 6.02 -3.78 -0.02 2.00 16 27 H 0.28 8.36 6.52 -40.82 -0.27 8.09 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.11 1.84 6.89 -51.93 -0.36 1.48 16 30 H 0.10 1.32 7.93 -51.93 -0.41 0.91 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.13 0.74 8.06 -52.48 -0.42 0.31 16 34 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 36 H 0.11 1.78 6.91 -51.93 -0.36 1.42 16 37 H 0.07 1.07 8.08 -51.93 -0.42 0.65 16 LS Contribution 325.37 15.07 4.90 4.90 Total: -1.00 -35.34 325.37 -9.56 -44.89 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -3.98 Total: 3.81 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: -3.06 Total: -18.95 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: -0.12 Total: -53.11 kcal Atomic # 8 Polarization: -63.43 SS G_CDS: -1.76 Total: -65.19 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -5.08 Total: 18.07 kcal Atomic # 16 Polarization: 66.03 SS G_CDS: -0.47 Total: 65.56 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.34 -9.56 -44.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192953975.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.725 kcal (2) G-P(sol) polarization free energy of solvation -35.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds