Wall clock time and date at job start Fri Apr 10 2020 18:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00219 * 0.02562 * 7 2 1 10 10 O 1.42101 * 106.39842 * 293.53625 * 9 7 2 11 11 O 1.42100 * 106.40241 * 66.45331 * 9 7 2 12 12 N 1.65601 * 107.21908 * 179.97438 * 9 7 2 13 13 C 1.46834 * 120.14395 * 90.00017 * 12 9 7 14 14 C 1.53720 * 109.01413 * 123.46278 * 13 12 9 15 15 N 1.46846 * 107.45355 * 45.99909 * 14 13 12 16 16 C 1.34198 * 127.98239 * 127.44466 * 15 14 13 17 17 O 1.21548 * 125.04509 * 7.57759 * 16 15 14 18 18 C 1.46532 * 109.90330 * 187.60188 * 16 15 14 19 19 C 1.39748 * 130.73168 * 175.94387 * 18 16 15 20 20 C 1.38643 * 116.85846 * 181.04299 * 19 18 16 21 21 C 1.38093 * 121.87816 * 0.03253 * 20 19 18 22 22 C 1.39146 * 121.79893 * 359.77942 * 21 20 19 23 23 C 1.37746 * 117.02492 * 0.03439 * 22 21 20 24 24 C 1.47808 * 123.12090 * 308.61854 * 15 14 13 25 25 H 1.09000 * 110.47106 * 291.42504 * 24 15 14 26 26 C 1.47093 * 120.14938 * 269.72223 * 12 9 7 27 27 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.54384 * 243.31969 * 13 12 9 29 29 H 1.08997 * 109.54744 * 3.59903 * 13 12 9 30 30 H 1.09001 * 109.85992 * 165.48319 * 14 13 12 31 31 H 1.08997 * 109.86016 * 286.43558 * 14 13 12 32 32 H 1.07997 * 121.57213 * 1.05980 * 19 18 16 33 33 H 1.08003 * 119.06534 * 180.02562 * 20 19 18 34 34 H 1.07995 * 119.10013 * 179.77333 * 21 20 19 35 35 H 1.08001 * 121.48287 * 180.02562 * 22 21 20 36 36 H 1.09006 * 109.73225 * 357.15296 * 26 12 9 37 37 H 1.08992 * 109.73583 * 117.84367 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 16 1.1236 -2.7200 0.0005 10 8 0.4511 -2.7950 1.2501 11 8 0.4519 -2.7956 -1.2494 12 7 2.2485 -3.9354 0.0005 13 6 2.7493 -4.4765 1.2703 14 6 2.5011 -5.9932 1.3010 15 7 2.9262 -6.5355 0.0042 16 6 3.7715 -7.5514 -0.2291 17 8 4.2332 -8.2849 0.6230 18 6 4.0555 -7.6446 -1.6636 19 6 4.9238 -8.4823 -2.3687 20 6 4.9841 -8.3080 -3.7429 21 6 4.2254 -7.3534 -4.3909 22 6 3.3546 -6.5161 -3.7005 23 6 3.2805 -6.6793 -2.3347 24 6 2.4703 -5.9855 -1.2898 25 1 1.4089 -6.1855 -1.4363 26 6 2.7458 -4.4818 -1.2714 27 1 -0.4850 -0.8401 -0.0004 28 1 3.8183 -4.2802 1.3540 29 1 2.2242 -4.0041 2.1005 30 1 3.0845 -6.4479 2.1016 31 1 1.4407 -6.1918 1.4570 32 1 5.5196 -9.2303 -1.8670 33 1 5.6434 -8.9368 -4.3230 34 1 4.3104 -7.2539 -5.4629 35 1 2.7633 -5.7714 -4.2126 36 1 2.2290 -4.0044 -2.1041 37 1 3.8182 -4.3056 -1.3534 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192953975.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:26 Heat of formation + Delta-G solvation = -96.430387 kcal Electronic energy + Delta-G solvation = -25416.101466 eV Core-core repulsion = 21670.204930 eV Total energy + Delta-G solvation = -3745.896536 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.082 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.54041 -39.16169 -38.76224 -37.83890 -36.61519 -35.88003 -35.29750 -33.74765 -32.16144 -30.41053 -28.68637 -27.69171 -25.63795 -24.56135 -22.93281 -22.39467 -21.46413 -21.10159 -19.38054 -18.55385 -17.93462 -17.56157 -17.37664 -17.02970 -16.82016 -16.54455 -15.88517 -15.77913 -15.58124 -15.31541 -15.12155 -14.86901 -14.74302 -14.44914 -14.05176 -13.65412 -13.39825 -13.22183 -13.09179 -13.00517 -12.88844 -12.76689 -12.69591 -12.41356 -12.27369 -11.98170 -11.97162 -11.20710 -11.11113 -10.94558 -10.51387 -10.06849 -9.90902 -9.60258 -9.38652 -7.66396 -0.29827 -0.02286 0.28111 1.46197 1.49531 1.60604 1.70418 1.76016 2.26973 2.41495 2.57451 2.75820 3.06394 3.28253 3.40259 3.56067 3.68475 3.82568 3.93066 4.00325 4.07080 4.15922 4.21006 4.27498 4.34043 4.42216 4.47571 4.63270 4.69793 4.75372 4.88966 4.98691 5.06592 5.33700 5.38171 5.43830 5.47119 5.58881 5.78322 5.84515 5.89106 6.45452 6.91484 7.93017 Molecular weight = 322.08amu Principal moments of inertia in cm(-1) A = 0.019871 B = 0.004149 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.757451 B = 6746.236219 C = 7401.483138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.038 3.962 3 Si 1.118 2.882 4 H -0.269 1.269 5 H -0.249 1.249 6 H -0.253 1.253 7 C -1.100 5.100 8 H 0.119 0.881 9 S 2.697 3.303 10 O -1.036 7.036 11 O -1.032 7.032 12 N -1.000 6.000 13 C 0.104 3.896 14 C 0.121 3.879 15 N -0.609 5.609 16 C 0.554 3.446 17 O -0.571 6.571 18 C -0.184 4.184 19 C -0.047 4.047 20 C -0.123 4.123 21 C -0.078 4.078 22 C -0.096 4.096 23 C -0.081 4.081 24 C 0.150 3.850 25 H 0.106 0.894 26 C 0.123 3.877 27 H 0.257 0.743 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.115 0.885 31 H 0.080 0.920 32 H 0.145 0.855 33 H 0.163 0.837 34 H 0.166 0.834 35 H 0.160 0.840 36 H 0.106 0.894 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.431 -12.775 -8.894 19.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.173 4.173 3 Si 0.932 3.068 4 H -0.193 1.193 5 H -0.173 1.173 6 H -0.177 1.177 7 C -1.234 5.234 8 H 0.138 0.862 9 S 2.800 3.200 10 O -1.026 7.026 11 O -1.022 7.022 12 N -0.837 5.837 13 C -0.022 4.022 14 C -0.001 4.001 15 N -0.341 5.341 16 C 0.345 3.655 17 O -0.453 6.453 18 C -0.187 4.187 19 C -0.066 4.066 20 C -0.140 4.140 21 C -0.096 4.096 22 C -0.114 4.114 23 C -0.083 4.083 24 C 0.045 3.955 25 H 0.124 0.876 26 C -0.003 4.003 27 H 0.068 0.932 28 H 0.106 0.894 29 H 0.120 0.880 30 H 0.133 0.867 31 H 0.098 0.902 32 H 0.163 0.837 33 H 0.180 0.820 34 H 0.184 0.816 35 H 0.178 0.822 36 H 0.125 0.875 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 10.455 -11.706 -8.288 17.749 hybrid contribution 0.092 -1.371 0.561 1.484 sum 10.546 -13.077 -7.726 18.491 Atomic orbital electron populations 1.71018 1.08473 1.30763 1.40249 1.27743 0.95052 1.08285 0.86222 0.83076 0.74860 0.69096 0.79794 1.19303 1.17282 1.17660 1.31898 1.09125 1.13404 1.69006 0.86237 1.00643 0.73105 0.74340 0.71891 1.93366 1.74373 1.88327 1.46528 1.93360 1.74300 1.88304 1.46223 1.57426 1.61791 1.52942 1.11543 1.21935 1.01411 0.93416 0.85462 1.22087 1.01518 0.92857 0.83649 1.48351 1.45583 1.32908 1.07214 1.18455 0.77923 0.79695 0.89387 1.90717 1.55819 1.46000 1.52726 1.20521 1.03334 1.01961 0.92931 1.21488 0.94617 0.96014 0.94470 1.21569 1.00116 0.99111 0.93234 1.21819 0.92959 0.92717 1.02092 1.21161 0.99500 1.00333 0.90389 1.20271 0.96748 0.96361 0.94939 1.20564 0.99459 0.93623 0.81895 0.87604 1.21656 1.01488 0.91348 0.85784 0.93239 0.89356 0.87991 0.86663 0.90198 0.83697 0.81981 0.81636 0.82234 0.87541 0.89266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -52.98 13.66 21.45 0.29 -52.68 16 2 C 0.04 2.07 5.46 84.65 0.46 2.54 16 3 Si 1.12 45.18 29.90 68.60 2.05 47.24 16 4 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 5 H -0.25 -8.97 7.11 99.48 0.71 -8.26 16 6 H -0.25 -9.24 7.11 99.48 0.71 -8.53 16 7 C -1.10 -58.26 9.75 67.73 0.66 -57.60 16 8 H 0.12 5.74 7.81 -2.91 -0.02 5.71 16 9 S 2.70 135.31 4.35 -56.49 -0.25 135.06 16 10 O -1.04 -57.37 16.20 -128.00 -2.07 -59.44 16 11 O -1.03 -55.94 16.20 -128.00 -2.07 -58.01 16 12 N -1.00 -37.62 3.23 -512.48 -1.66 -39.27 16 13 C 0.10 3.33 6.61 86.56 0.57 3.91 16 14 C 0.12 3.53 7.11 86.56 0.62 4.15 16 15 N -0.61 -18.46 3.01 -805.07 -2.42 -20.88 16 16 C 0.55 17.63 7.99 86.50 0.69 18.32 16 17 O -0.57 -21.34 17.76 -3.87 -0.07 -21.41 16 18 C -0.18 -4.72 6.15 -20.12 -0.12 -4.84 16 19 C -0.05 -0.90 10.32 22.73 0.23 -0.67 16 20 C -0.12 -1.57 9.94 22.33 0.22 -1.34 16 21 C -0.08 -0.94 9.97 22.45 0.22 -0.72 16 22 C -0.10 -1.61 10.25 22.37 0.23 -1.38 16 23 C -0.08 -1.90 5.60 -19.78 -0.11 -2.01 16 24 C 0.15 4.22 3.79 43.53 0.17 4.39 16 25 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 26 C 0.12 3.85 6.02 86.23 0.52 4.37 16 27 H 0.26 16.18 6.52 -92.71 -0.60 15.58 16 28 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 29 H 0.10 3.46 6.89 -2.39 -0.02 3.44 16 30 H 0.12 3.01 7.93 -2.39 -0.02 2.99 16 31 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 33 H 0.16 0.98 8.06 -2.91 -0.02 0.96 16 34 H 0.17 0.86 8.06 -2.91 -0.02 0.83 16 35 H 0.16 2.13 8.06 -2.91 -0.02 2.10 16 36 H 0.11 3.40 6.91 -2.38 -0.02 3.39 16 37 H 0.09 2.49 8.08 -2.39 -0.02 2.47 16 Total: -1.00 -78.82 325.37 -0.57 -79.39 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 1.27 Total: 20.91 kcal Atomic # 6 Polarization: -35.25 SS G_CDS: 4.36 Total: -30.89 kcal Atomic # 7 Polarization: -109.05 SS G_CDS: -3.79 Total: -112.84 kcal Atomic # 8 Polarization: -134.65 SS G_CDS: -4.22 Total: -138.86 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.05 Total: 47.24 kcal Atomic # 16 Polarization: 135.31 SS G_CDS: -0.25 Total: 135.06 kcal Total: -78.82 -0.57 -79.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192953975.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.045 kcal (2) G-P(sol) polarization free energy of solvation -78.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds