Wall clock time and date at job start Fri Apr 10 2020 18:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 C 1.40131 * 120.88778 * 39.22263 * 3 2 1 5 5 C 1.37870 * 119.16375 * 179.97438 * 4 3 2 6 6 N 1.31966 * 121.00438 * 0.02963 * 5 4 3 7 7 C 1.32363 * 121.96918 * 359.96920 * 6 5 4 8 8 N 1.39030 * 119.64441 * 180.02562 * 7 6 5 9 9 C 1.46894 * 110.99486 * 0.02562 * 8 7 6 10 10 C 1.53243 * 109.33846 * 187.25355 * 9 8 7 11 11 N 1.47082 * 108.51900 * 306.16925 * 10 9 8 12 12 S 1.65608 * 120.87917 * 231.18699 * 11 10 9 13 13 O 1.42100 * 106.40059 * 203.54080 * 12 11 10 14 14 O 1.42096 * 106.40050 * 336.46113 * 12 11 10 15 15 C 1.76202 * 107.21643 * 90.00137 * 12 11 10 16 16 H 1.07996 * 120.00069 * 359.97438 * 15 12 11 17 17 C 1.37877 * 119.99696 * 180.02562 * 15 12 11 18 18 N 1.31516 * 120.00169 * 359.97438 * 17 15 12 19 19 Si 1.86797 * 120.00014 * 179.97438 * 17 15 12 20 20 H 1.48504 * 109.47375 * 89.99544 * 19 17 15 21 21 H 1.48497 * 109.47220 * 209.99725 * 19 17 15 22 22 H 1.48508 * 109.47201 * 329.99615 * 19 17 15 23 23 C 1.47077 * 118.24009 * 51.45654 * 11 10 9 24 24 C 1.46902 * 110.99981 * 124.30085 * 8 7 6 25 25 C 1.39030 * 120.71535 * 0.27732 * 7 6 5 26 26 H 1.07997 * 120.42184 * 0.02562 * 4 3 2 27 27 H 1.08001 * 119.49790 * 180.02562 * 5 4 3 28 28 H 1.08995 * 109.49706 * 67.29456 * 9 8 7 29 29 H 1.09000 * 109.49576 * 307.20842 * 9 8 7 30 30 H 1.09002 * 109.63078 * 186.46427 * 10 9 8 31 31 H 1.08992 * 109.63090 * 65.87499 * 10 9 8 32 32 H 0.96999 * 119.99975 * 180.02562 * 18 17 15 33 33 H 1.09000 * 109.62570 * 68.25311 * 23 11 10 34 34 H 1.08993 * 109.63065 * 188.83160 * 23 11 10 35 35 H 1.09004 * 109.49201 * 292.71119 * 24 8 7 36 36 H 1.09003 * 109.48994 * 52.76412 * 24 8 7 37 37 H 1.08003 * 120.53848 * 179.69910 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2878 -0.9307 -0.7604 5 6 4.6659 -0.8976 -0.7346 6 7 5.3109 -0.0056 -0.0067 7 6 4.6738 0.8931 0.7271 8 7 5.4020 1.8110 1.4755 9 6 6.8460 1.6028 1.3036 10 6 7.6086 2.5078 2.2771 11 7 7.1524 3.8925 2.0826 12 16 8.2386 5.1199 1.8453 13 8 7.5834 6.3174 2.2398 14 8 9.4670 4.6834 2.4108 15 6 8.5084 5.2491 0.1089 16 1 7.9935 4.5841 -0.5686 17 6 9.3777 6.1986 -0.3849 18 7 10.0050 7.0082 0.4401 19 14 9.6643 6.3353 -2.2257 20 1 8.6853 7.2870 -2.8098 21 1 11.0428 6.8268 -2.4769 22 1 9.4924 5.0006 -2.8538 23 6 5.7063 4.1592 2.1104 24 6 5.0187 3.1882 1.1372 25 6 3.2844 0.9258 0.7616 26 1 2.7697 -1.6646 -1.3598 27 1 5.2260 -1.6125 -1.3190 28 1 7.1297 1.8486 0.2804 29 1 7.0901 0.5605 1.5089 30 1 8.6779 2.4430 2.0761 31 1 7.4062 2.1963 3.3018 32 1 10.6163 7.6765 0.0927 33 1 5.3246 4.0033 3.1194 34 1 5.5173 5.1865 1.7991 35 1 5.3282 3.4116 0.1162 36 1 3.9373 3.2958 1.2213 37 1 2.7675 1.6573 1.3652 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192961603.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:27:35 Heat of formation + Delta-G solvation = 2.944802 kcal Electronic energy + Delta-G solvation = -24687.269601 eV Core-core repulsion = 20977.975047 eV Total energy + Delta-G solvation = -3709.294553 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.089 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.01273 -38.51879 -36.98043 -35.35689 -34.54739 -34.00780 -33.11312 -33.03637 -30.94437 -30.36507 -26.30267 -26.16329 -25.27433 -23.48032 -22.76943 -20.69737 -19.39744 -18.52795 -17.57875 -16.92912 -16.49474 -16.29259 -15.79837 -15.26687 -15.03261 -15.00624 -14.66560 -14.45022 -14.34170 -14.10797 -13.61151 -13.44181 -13.36187 -13.28381 -12.96664 -12.27878 -12.10187 -12.05053 -11.67110 -11.30343 -11.25750 -11.14079 -11.09716 -10.64225 -10.34834 -10.30352 -10.18173 -10.13808 -10.06932 -9.84733 -9.28792 -8.98570 -8.42817 -8.18682 -6.73800 -5.36560 0.31303 0.77928 2.17547 2.20032 2.63524 3.03253 3.10502 3.16150 3.19227 3.39986 3.64429 4.01198 4.20388 4.42514 4.53729 4.60039 4.68398 4.75680 5.07901 5.11965 5.18201 5.29571 5.42387 5.46921 5.56803 5.62496 5.69942 5.82433 5.89568 5.94611 6.08836 6.11404 6.30728 6.32331 6.63292 6.66447 6.99322 7.02292 7.28238 7.46788 7.68919 7.92268 8.85011 10.19792 Molecular weight = 322.09amu Principal moments of inertia in cm(-1) A = 0.017710 B = 0.003581 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.607392 B = 7817.821772 C = 8293.126852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C 0.256 3.744 3 C 0.041 3.959 4 C -0.167 4.167 5 C 0.137 3.863 6 N -0.502 5.502 7 C 0.328 3.672 8 N -0.472 5.472 9 C 0.053 3.947 10 C 0.128 3.872 11 N -1.016 6.016 12 S 2.714 3.286 13 O -1.003 7.003 14 O -1.001 7.001 15 C -1.019 5.019 16 H 0.100 0.900 17 C 0.134 3.866 18 N -0.845 5.845 19 Si 0.919 3.081 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.263 1.263 23 C 0.132 3.868 24 C 0.043 3.957 25 C -0.144 4.144 26 H 0.142 0.858 27 H 0.167 0.833 28 H 0.062 0.938 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.066 0.934 32 H 0.291 0.709 33 H 0.070 0.930 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.407 -14.125 -2.442 17.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.077 5.077 2 C -0.060 4.060 3 C 0.030 3.970 4 C -0.190 4.190 5 C -0.021 4.021 6 N -0.217 5.217 7 C 0.096 3.904 8 N -0.189 5.189 9 C -0.075 4.075 10 C 0.001 3.999 11 N -0.851 5.851 12 S 2.815 3.185 13 O -0.993 6.993 14 O -0.992 6.992 15 C -1.153 5.153 16 H 0.118 0.882 17 C -0.084 4.084 18 N -0.475 5.475 19 Si 0.742 3.258 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.187 1.187 23 C 0.005 3.995 24 C -0.084 4.084 25 C -0.170 4.170 26 H 0.160 0.840 27 H 0.184 0.816 28 H 0.080 0.920 29 H 0.113 0.887 30 H 0.118 0.882 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.088 0.912 34 H 0.119 0.881 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.793 -13.442 -1.121 17.275 hybrid contribution -0.295 -0.097 -2.280 2.301 sum -11.089 -13.539 -3.401 17.828 Atomic orbital electron populations 1.81280 1.11831 1.07232 1.07368 1.25479 0.92385 0.94065 0.94090 1.15993 0.84666 0.97415 0.98949 1.22010 0.95604 0.99992 1.01419 1.22559 0.90922 0.94530 0.94060 1.67636 1.41278 1.05895 1.06858 1.19839 0.89547 0.92661 0.88360 1.59008 1.07740 1.03588 1.48514 1.22494 0.83701 1.01105 1.00235 1.21394 0.99120 0.80814 0.98535 1.58381 1.16754 1.20965 1.89001 1.00577 0.70968 0.70368 0.76553 1.93356 1.76030 1.44712 1.85194 1.93358 1.43451 1.81709 1.80653 1.30597 1.37914 1.28261 1.18510 0.88152 1.24736 0.91126 0.91609 1.00954 1.69891 1.23691 1.16926 1.36959 0.86193 0.78297 0.79437 0.81826 1.19217 1.19925 1.18686 1.21396 0.80624 0.98678 0.98793 1.22885 1.00747 0.84948 0.99856 1.21610 0.93404 1.00682 1.01273 0.83968 0.81627 0.91989 0.88743 0.88215 0.91537 0.89840 0.91180 0.88071 0.92079 0.89288 0.83460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -4.69 18.54 41.84 0.78 -3.92 16 2 C 0.26 2.44 15.40 -22.47 -0.35 2.09 16 3 C 0.04 0.34 5.75 -106.74 -0.61 -0.27 16 4 C -0.17 -1.14 9.85 -39.01 -0.38 -1.52 16 5 C 0.14 1.06 11.16 -17.63 -0.20 0.86 16 6 N -0.50 -5.50 8.64 -12.50 -0.11 -5.60 16 7 C 0.33 3.68 6.40 -155.06 -0.99 2.68 16 8 N -0.47 -5.93 4.65 -172.65 -0.80 -6.73 16 9 C 0.05 0.72 4.82 -3.70 -0.02 0.71 16 10 C 0.13 2.05 6.53 -3.60 -0.02 2.03 16 11 N -1.02 -19.18 3.32 -112.97 -0.38 -19.56 16 12 S 2.71 68.92 4.98 -107.50 -0.54 68.38 16 13 O -1.00 -27.99 16.79 -57.17 -0.96 -28.95 16 14 O -1.00 -28.12 16.80 -57.17 -0.96 -29.08 16 15 C -1.02 -26.90 9.75 30.60 0.30 -26.61 16 16 H 0.10 2.43 7.81 -52.49 -0.41 2.02 16 17 C 0.13 3.63 5.46 -17.82 -0.10 3.53 16 18 N -0.84 -24.28 13.19 55.43 0.73 -23.55 16 19 Si 0.92 20.04 29.54 -169.99 -5.02 15.02 16 20 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 22 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 23 C 0.13 2.03 6.56 -3.36 -0.02 2.00 16 24 C 0.04 0.54 5.43 -3.46 -0.02 0.52 16 25 C -0.14 -1.33 8.91 -38.77 -0.35 -1.67 16 26 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 27 H 0.17 0.79 8.06 -52.49 -0.42 0.37 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.09 1.17 7.64 -51.93 -0.40 0.77 16 30 H 0.10 1.69 7.22 -51.93 -0.37 1.32 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.29 7.52 8.31 -40.82 -0.34 7.19 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.10 1.63 7.21 -51.93 -0.37 1.26 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.09 0.84 6.64 -51.93 -0.34 0.50 16 37 H 0.15 1.16 7.15 -52.48 -0.38 0.78 16 LS Contribution 334.46 15.07 5.04 5.04 Total: -1.00 -35.02 334.46 -8.92 -43.95 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -3.95 Total: 0.64 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -2.76 Total: -15.65 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: 0.22 Total: -59.36 kcal Atomic # 8 Polarization: -56.11 SS G_CDS: -1.92 Total: -58.03 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Atomic # 16 Polarization: 68.92 SS G_CDS: -0.54 Total: 68.38 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.02 -8.92 -43.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192961603.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.891 kcal (2) G-P(sol) polarization free energy of solvation -35.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds